Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Harpegnathos_20saltator_20[refseq_20GCF_5F000147195.1_202010-09-17] 8,893 sequences; 294,465,601 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq8891 239 3e-57 seq2684 143 2e-28 seq1415 118 8e-21 seq8256 116 3e-20 >seq8891 Length=324241 Score = 239 bits (264), Expect = 3e-57 Identities = 690/1045 (66%), Gaps = 24/1045 (2%) Strand=Plus/Plus Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 ||||||||||| || | ||| || || ||||| || || || || ||||| | || ||| Sbjct 193699 ATACCATTGGCGTCAATATCGAAAGTAACTTCGATCTGCGGCACGCCTCTAGGCGCGGGT 193758 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 || || || | | |||| | || ||| | |||||||||||||| | || || Sbjct 193759 GGAATTCCCGTAAGCTCAAATTTGCCAAGAATGTTATTATCTTTAGTCATCGCTCTCTCT 193818 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620 || ||| ||| ||| ||| ||| | | ||||| || || || || ||||| | | Sbjct 193819 CCTTCGTAAACTTGAATAAGTACTCCCGGCTGATTGTCCGAGTACGTGGTAAA--CGTTT 193876 Query 281621 GATTTT--TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAG 281678 || ||| || ||| ||||| |||||||| | || | ||||||| | ||| |||| Sbjct 193877 GAGTTTGCTTCGTAGGTATTGTAGTGTTTCTCTTGATCAATGTGGTCATGACACCGCCAG 193936 Query 281679 CTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTT 281738 | || || | ||| || || | ||||| ||||| | || | | || || | | | Sbjct 193937 CGGTCTCAATACCCAGTGACAATGGAGTCACATCCAACAGAAGCAGATCCTGTACCTCCT 193996 Query 281739 CATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCAT 281798 || | | ||| || || || ||||| | || || || || || || || |||| Sbjct 193997 CAGACTTGTCACCGTGCAGGATGGCCGCTTGGACCGCTGCGCCGTAAGCGACGGCCTCAT 194056 Query 281799 CAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAAAGAAGTTGTCTT 281857 | || |||| || || || | | || |||||||| || | || | || || | | Sbjct 194057 CCGGGTTAATAGATTTGTTCAACTCCTTGCCATTGAAGAAGTCCTGTAGCAACTTTTGT- 194115 Query 281858 ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCC 281917 | ||| || || | | || || || |||| || || || || || | |||||| Sbjct 194116 ATCTTTGGTATCCTGGTGGAGCCACCGACTAGAACTATGCTGTGGACTTGAGCCTTATCC 194175 Query 281918 AGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTC-TAAACAAGTCTGA 281976 | || | ||| ||| | || || |||||||| ||| |||| | |||| || | Sbjct 194176 ATCTTCGCGTCCCTTAATGCCTTCTCTACGGGTTCGAGAGT-GCTCCTGAACAGATCAGC 194234 Query 281977 ACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAAC 282034 || || || ||||| | || || || | || || | || || ||||| || || ||| Sbjct 194235 GCAGAGCTCCTCGAACCTGGCCCTGGTGATAG--ACGTATAGAAGTCAATACCCTCAAAC 194292 Query 282035 AAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCA 282094 | || |||| ||||| | | ||| ||||| || || | | || || | ||| Sbjct 194293 AGCGAGTCAATCTCAATACTCGCTTGTGTCGATGAGCTCAGCGTTCTCTTTGCTCTTTCG 194352 Query 282095 CATGCTGTCCTTAGTCTTCGTAAGGCT--TTTGCTGATTGATTCAAATCTGTTTTATATT 282152 || || ||||| || | || || ||| |||| || | | ||| |||| |||| || | Sbjct 194353 CAAGCCGTCCTCAGACGTCTTACTGCTCTTTTGTTGGT--ACTCAGATCTTTTTTGTACT 194410 Query 282153 TTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTATCAAAATCTTCACCTCC 282210 | |||||||| || | ||| | ||| | || | ||||| || ||||||||||| || Sbjct 194411 TCCTCTTGAACTCCTGAACGAA--ATGGTTGACCATTCGATTGTCGAAATCTTCACCACC 194468 Query 282211 CAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAG 282270 | | ||||| || | || | | | |||| ||||| || || |||| | ||||| Sbjct 194469 AAGATGAGTATCGCCGGCTGTGGATTTCACTTCGAAAATGCCGTCCTCAATCGTCAAAAT 194528 Query 282271 AGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTG 282330 | || || || || ||||| | ||| || || || |||||| |||| | | Sbjct 194529 GGACACGTCGAAAGTACCGCCACCAAGATCGAAGATGAGGACATTC--TTCTCGCCCGAG 194586 Query 282331 GTTTT--TATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAA 282388 ||||| | || ||||| ||||| | ||||| || || || || || || ||||| | | Sbjct 194587 GTTTTCTTGTCGAGACCGTACGCTATCGCAGCCGCTGTAGGCTCGTTTATTATTCTGAGA 194646 Query 282389 ACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAA 282448 || || |||||||| || || || || || || |||||||| || || || ||||| Sbjct 194647 ACGTTCAGACCAGCGATAGCGCCGGCGTCCTTCGTCGCTTGTCTCTGAGAGTCATTAAAG 194706 Query 282449 TATGCAGGAACAGTAATAACGGCAT 282473 || || || || ||||||||||||| Sbjct 194707 TAAGCTGGTACGGTAATAACGGCAT 194731 Score = 102 bits (112), Expect = 6e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 282687 CATCNAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCA 282746 || | || ||||||||| | ||||| | ||| | |||| || || ||||| ||||||| Sbjct 196106 CACCGAAGATAGTATTGCTGGGATTCATAGCAACCTGATTCTTTGCCGCATCACCAATCA 196165 Query 282747 GATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCG 282806 | || || || || |||| |||||| ||| || || ||||| ||||||||||||| Sbjct 196166 GCCTCTCGGTGTCGGTGAATGCAACATAACTTGGTGTGGTCCGATTGCCTTGATCATTCG 196225 Query 282807 CAATAATTTCAACTTTACCATTTTGCCATACACCTACACAA 282847 | || || ||||| || |||| || | |||||||| ||| Sbjct 196226 CGATGATCTCAACCTTGCCATGCTGGAAAACACCTACGCAA 196266 >seq2684 Length=1306576 Score = 143 bits (158), Expect = 2e-28 Identities = 600/927 (65%), Gaps = 20/927 (2%) Strand=Plus/Minus Query 281774 GCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTG 281833 || || || ||||| ||||| ||||| ||||| | | | || || | || || || Sbjct 948810 GCCGCGCCGTATGCCACAGCCTCATCCGGATTGATGGACTTGTTGAGCTCCTTGCCGTTA 948751 Query 281834 AAAAAATTTGAAAGAAGTTGTCTT-ACCTTAGGAATACGAGATGAT-CCTCCAACTAATA 281891 || |||| | || |||| ||| | ||| || ||||| | || | || || || | | Sbjct 948750 AAGAAATCTTGCAGGAGTT-TCTGGATCTTCGGGATACGCG-TGCTGCCACCGACCAGGA 948693 Query 281892 CAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTT 281951 | || ||||| | ||| || || |||| || | ||| | ||| || || |||| Sbjct 948692 CGATGTCATGGATCTGCGACTTGTCCATCTTCGCATCGCGCAGCGATTTCTCCACAGGTT 948633 Query 281952 CAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGA 282011 | ||| | | | || | ||| | |||||||| || || || || || || || Sbjct 948632 CGAGAGTACCACGGAAGAGGTCCGCGCAAAGTTCCTCAAAACGCGCCCTGGT--GATGGA 948575 Query 282012 CAT-TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGA 282069 | || || |||||||||||| | | ||||| | || || | | || || || || Sbjct 948574 AGTGTAGAAGTCAATTCCTTCGTAAAGCGAATCGATCTCGATGCTCGCCTGCGTAGAGGA 948515 Query 282070 AGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AG-GCTTTTGCT 282127 || | | || || || ||||| ||||| || | || | || | || || |||| | Sbjct 948514 CGACAAGGTGCGCTTGGCGCGTTCGCATGCAGTACGTAAGCGACGAAGAGCGCGTTTGTT 948455 Query 282128 GATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAAC-ACACCATGTTACAAG 282186 | | | ||| || |||| || || | |||||| || | || | | || | || | Sbjct 948454 GCTGG--TCAGGTCCTTTTTGTACTTGCGCTTGAATTCCTGCACGAAATGAT-TGACCAT 948398 Query 282187 ACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAA 282246 ||| || || || || || || ||||| | ||| | |||| ||| | | | || | ||| Sbjct 948397 ACGGTTGTCGAAGTCCTCGCCACCCAAGTGAGTGTCACCTGCCGTGGATTTGACCTCGAA 948338 Query 282247 AAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAAT 282306 | |||||||| | | || | || |||||| || |||||||| | ||| || || Sbjct 948337 GATACCATCTTCGATCGTCAGGATAGATACATCAAAAGTACCACCACCGAGATCGAAGAT 948278 Query 282307 AAGTACATTCATTTCTTTGTCTTGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCA 282364 || || ||| || | ||| || ||||||||||||||||| | || || || Sbjct 948277 CAGGACGTTCCGCTCGCCGG--TGGCCTTCTTATCAAGACCATACGCTATCGCGGCGGCG 948220 Query 282365 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTG 282424 || || || || ||||| | ||| ||||| | || | || | || || || || || Sbjct 948219 GTGGGCTCGTTGATAATACGCAATACATTCAAGCCTGAGATGGTGCCAGCGTCCTTGGTT 948160 Query 282425 GCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCT 282484 || || | ||| || ||||| || || || || || || || ||||||| || || Sbjct 948159 GCCTGACGTTGCGAGTCGTTGAAGTAAGCGGGCACGGTGATCACGGCATTAGTGACAGTC 948100 Query 282485 TTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGT 282544 || || | || || ||| || | |||||||| || | ||| || | || | Sbjct 948099 TTGCCTAGGTACGCCTCTGCGGTCTCCTTCATTTTTACCAAGACCATCGAACTCACTTCT 948040 Query 282545 TCTGGAGAATATTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACC 282603 || || ||| | | ||| | || || ||| ||||| || | |||||| ||| Sbjct 948039 TCAGG-GAAGAAAGTCTTTGTCTCTCCTTTGTATTGTACTTGAATCTTTGGTTTGCCACC 947981 Query 282604 AACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAA 282663 | |||| | ||| |||||||||| | ||||||||| | |||||| || |||| | ||| Sbjct 947980 ATCATTGACAACAGTAAATGGCCAGTGTTTCATATCAGCCTGAACAGTTGGGTCTTCAAA 947921 Query 282664 ATCTCTACCAATTAATCGTTTTGCATC 282690 | |||||| || | || ||||| Sbjct 947920 GCGACGACCAATCAACCTCTTGGCATC 947894 >seq1415 Length=940728 Score = 118 bits (130), Expect = 8e-21 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 282322 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 282381 ||| |||| | |||||| | ||||| |||| ||||| ||||||||||||||||| | Sbjct 9851 TTTATCTTCCTGTTTATCCATGCCATATGCAAGCGCAGCTGCAGTTGGTTCATTAATTAC 9910 Query 282382 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 282441 | | ||||| | ||||| || || |||||||| || ||||||| ||||||||| Sbjct 9911 ACGAAGTACATTCAATCCAGCTATCTGACCAGCATCTTTTGTAGCTTGTCGTTGTGAATC 9970 Query 282442 GTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACT 282481 ||||||||||| || |||||||| || |||| ||||| Sbjct 9971 ATTAAAATATGCTGGTACAGTAATGACAGCATTCTTTACT 10010 Score = 107 bits (118), Expect = 1e-17 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 86119 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 86178 || |||||||| || |||||||||||||||||||||| ||| |||| || || || Sbjct 9873 CCATATGCAAGCGCAGCTGCAGTTGGTTCATTAATTACACGAAGTACATTCAATCCAGCT 9932 Query 86179 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 86238 || | | ||| ||| || ||||||| |||| |||||||||||||||||||||||| Sbjct 9933 ATCTGACCAGCATCTTTTGTAGCTTGTCGTTGTGAATCATTAAAATATGCTGGTACAGTA 9992 Query 86239 ATAACTGCTTTATT 86252 || || || || || Sbjct 9993 ATGACAGCATTCTT 10006 >seq8256 Length=771335 Score = 116 bits (128), Expect = 3e-20 Identities = 127/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 637121 TTATTGTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGAT 637180 |||| || |||| |||| ||| || ||||| ||||| |||||| | ||||| ||||||| Sbjct 600006 TTATAGTAGATTTTTCTAGTCCCAACATTGCCAAAGAGATGCATGTGGGACACTTAAGAT 599947 Query 637181 CAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATC 637240 | ||||| ||||| || ||||| ||| | |||||| | ||||| ||||| Sbjct 599946 CTACTATAATTGGAGACAGTATTTCTAGACTGTTAGAATACTTAGGACATGATGTGCTGA 599887 Query 637241 GTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGC 637289 | || |||||| | ||||||||||| || || || ||||||||||| || Sbjct 599886 GGATCAATCATATAGGTGATTGGGGTACACAGTTTGGTATGTTAATAGC 599838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740193791281818