Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Harpegnathos_20saltator_20[refseq_20GCF_5F000147195.1_202010-09-17] 8,893 sequences; 294,465,601 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq8630 95.1 2e-14 seq3742 89.7 7e-13 >seq8630 Length=35068 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 39427 AAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTC 39486 ||||||||| | | |||||||||||| |||||||| ||||| || ||| | | Sbjct 15610 AAATCCTAACGCAACGAACAATCTATCTGCGACAAATTCGATGTAGGTGCACATGAGTGT 15551 Query 39487 ACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTC 39546 |||||||||||||||||||| || || | |||| |||||||| || || || || || Sbjct 15550 GCAATTCATTCCTATGAGTTTTACCGGCAATGCCTGTGTTAGAAATTCCTTCTCAATTTC 15491 Query 39547 TACGGCCTCTGTTATTATCG 39566 |||||| || | || |||| Sbjct 15490 TACGGCGTCCATAATAATCG 15471 >seq3742 Length=701801 Score = 89.7 bits (98), Expect = 7e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 69516 TTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGA 69575 ||| |||||||| ||||| |||||| ||||||||||| |||| |||||||||||| Sbjct 290093 TTCAAATTCATCACCCCAGACATCAATTAATCCAGGACACTCATGTGGACACATCAAACT 290034 Query 69576 CCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAA 69635 ||| || ||||||| ||| ||| |||||||| ||| || |||| | || ||| Sbjct 290033 CCAATCAGCATCATCAAAAACACGTCGCATAAATATATCTGGTGTCCATAATGCATAAAA 289974 Query 69636 GAGATCTCTGGTTCTATTTTCTTCATTTCCTGTA 69669 | |||| | | ||| | ||||| |||||| Sbjct 289973 CATATCTTTAGCTCTCAACTGTTCATCACCTGTA 289940 Score = 84.2 bits (92), Expect = 3e-11 Identities = 116/159 (73%), Gaps = 4/159 (3%) Strand=Plus/Minus Query 68949 TCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGC 69008 ||| | ||| || | || ||||| || | ||| | ||| ||||| || || || || Sbjct 290826 TCCCTCATAGGTCGCGTATGGTCCGTCTTCAATAGCCATTTCGCAACTAGCTTCCAAGGC 290767 Query 69009 ACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAA 69068 ||| ||||||| ||||| ||||||| |||||| | || |||||| ||| || || Sbjct 290766 ACCATAATAAAACGTTTCAAAAATCTGTACATTGAGTTTTTTAGCTTCTTTACTTTCAAA 290707 Query 69069 TGGATAATGTAA--AAGAATAAATGCATCTGCCAATCCC 69105 |||||| | | | |||| |||||||||||||||| ||| Sbjct 290706 TGGATA-TCTCATTAAGA-TAAATGCATCTGCCAAGCCC 290670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686832441500520