Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Harpegnathos_20saltator_20[refseq_20GCF_5F000147195.1_202010-09-17] 8,893 sequences; 294,465,601 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq7280 105 5e-18 seq8630 100 2e-16 >seq7280 Length=1514598 Score = 105 bits (116), Expect = 5e-18 Identities = 181/258 (70%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 40949 AGGAATGGATCAATTACAGTGCGTTATAGATACGATTAA--ATCCGATCCCGATAGCCGA 41006 |||||| |||||||| || ||||| ||| || || || | ||| ||| | || Sbjct 1012558 AGGAATAGATCAATTGAAGGAAGTTATTCATAAAATCAAGCATTC--TCCAGATGACAGA 1012615 Query 41007 CGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTTGT 41066 ||||| ||| ||| || ||||||||||| ||| | | |||||||||||||| ||| Sbjct 1012616 CGTATTATAATGTCTGCTTGGAACCCAACTGACATTCCAAAAATGGCATTGCCACCATGT 1012675 Query 41067 CA-TTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAG 41125 || | |||| ||||||||| || ||||||| |||||||| || | ||||| || Sbjct 1012676 CACAATTTTAT-TCAGTTTTATGTAAGCAATGGAGAACTGTCTGCGCAGCTTTATCAGAG 1012734 Query 41126 ATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTA 41185 | || ||||| |||| || |||||||||||||| ||| || || | | || Sbjct 1012735 GAGTGCAGATATGGGCTTAGGAGTACCGTTTAACATAGCATCATATTCTTTGTTAATTTA 1012794 Query 41186 TATGATTGCACACGTTAC 41203 || || || || ||||| Sbjct 1012795 CATAATCGCTCATGTTAC 1012812 >seq8630 Length=35068 Score = 100 bits (110), Expect = 2e-16 Identities = 121/162 (75%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 43829 GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAAT 43888 |||| | |||| ||||| || |||||||| ||||| || ||||| || |||||| Sbjct 13561 GAAAGATATTTCATATCCCACGTGTTGGCGTTCTTTGCCGCTTCTGACGGTATCGTCAAT 13620 Query 43889 GAAAATTTGGTTAGTCGGTT-TGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTA 43947 |||||| | || | || ||| ||||||||| | | |||| || || ||||| || Sbjct 13621 GAAAATCTTATTGAAAGATTCTGC-CAAGAAGTTAAGATTTCAGAGGCGCGTTGTTTCTA 13679 Query 43948 TGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTA 43989 ||| || |||||||| ||||| || |||||||| |||||||| Sbjct 13680 TGGCTTCCAAATTGCAATAGAGAACATTCATTCCGAAATGTA 13721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397412922352465