Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Harpegnathos_20saltator_20[refseq_20GCF_5F000147195.1_202010-09-17] 8,893 sequences; 294,465,601 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq8311 196 5e-45 seq3349 149 7e-31 seq5300 143 3e-29 >seq8311 Length=725843 Score = 196 bits (216), Expect = 5e-45 Identities = 180/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| ||||| || || |||||||| || ||||||||||| || | | Sbjct 132791 ATGCAAATCTTTGTGAAGACTCTCACAGGCAAGACCATCACTCTTGAGGTCGAAGCTTCT 132850 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | |||||||| |||||||| || ||||||||||||||||| ||| Sbjct 132851 GACACAATAGAAAATGTAAAGGCTAAGATTCAGGATAAAGAGGGAATTCCTCCAGATCAG 132910 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || ||||| || |||||||| || || | | || || | ||||||||| Sbjct 132911 CAACGTCTGATCTTTGCCGGCAAGCAACTGGAAGACGGCAGAACTCTTTCTGACTATAAT 132970 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| ||||| ||||| |||||||| || |||||||||| || ||| Sbjct 132971 ATCCAGAAGGAGTCCACACTTCATCTGGTTCTGCGTCTTCGAGGAGGA 133018 Score = 163 bits (180), Expect = 3e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || || || || || || || ||||| || |||||||||||||| || Sbjct 133702 AATGCAGATTTTCGTAAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTTGAAGCATC 133761 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | || | ||| | || || |||||||||||||| |||||||||||||| || || Sbjct 133762 TGACACAATAGAGAATGTAAAAGCCAAAATTCAGGACAAAGAGGGAATTCCTCCGGATCA 133821 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| ||| | || |||||||| ||||| | || |||| | || ||| | ||||| || Sbjct 133822 GCAACGTTTGATCTTTGCTGGCAAGCAGTTGGAAGATGGCAGAACTCTATCGGACTACAA 133881 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || ||| ||||||| || |||||||| || Sbjct 133882 CATCCAGAAGGAGTCCACGCTGCATTTAGTCTTACGACTTCGCGGAGG 133929 Score = 156 bits (172), Expect = 5e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || || | || || | || ||||| || |||||||||||||| || Sbjct 133018 AATGCAGATTTTCGTAAGAACCCTCGCGGGTAAGACCATCACTCTTGAGGTTGAAGCATC 133077 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | || | ||| | || |||||||| |||||||| |||||||||||||| || || Sbjct 133078 TGACACAATAGAGAATGTAAAAGCTAAAATCCAGGACAAAGAGGGAATTCCTCCGGATCA 133137 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| ||||| || || || || |||||| | || || | | || || | |||||||| Sbjct 133138 GCAACGTCTGATCTTCGCCGGAAAGCAATTAGAAGACGGCAGAACTCTTTCTGACTATAA 133197 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | |||| ||||| ||||| |||||||| || |||||||||| || ||| Sbjct 133198 TATCCAGAAGGAGTCCACACTTCATCTGGTTCTGCGTCTTCGAGGAGGA 133246 Score = 147 bits (162), Expect = 2e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || || | || || | || ||||| || |||||||||||||| || Sbjct 133246 AATGCAGATTTTCGTAAGAACCCTCGCGGGTAAGACCATCACTCTTGAGGTTGAAGCATC 133305 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | || | ||| | || |||||||| ||||| || |||||||||||||| || || Sbjct 133306 TGACACAATAGAGAATGTAAAAGCTAAAATCCAGGATAAAGAGGGAATTCCTCCGGATCA 133365 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||||| || || || || |||||| | || || | | || || | |||||||| Sbjct 133366 ACAACGTCTGATCTTCGCCGGAAAGCAATTAGAAGACGGCAGAACTCTTTCTGACTATAA 133425 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| ||||| ||||| |||||||| || ||||||||||| || ||| Sbjct 133426 CATCCAGAAGGAGTCCACACTTCATCTGGTTTTGCGTCTTCGAGGAGGA 133474 Score = 143 bits (158), Expect = 3e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || || || || || || || ||||| || |||||||||||||| | Sbjct 133474 AATGCAGATTTTCGTAAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTTGAAGCGTC 133533 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | || | ||| | ||||| ||||| || ||||| || || |||||||| || || Sbjct 133534 TGACACAATAGAGAATGTAAAGGCAAAAATACAAGACAAAGAAGGTATTCCTCCTGATCA 133593 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| || || || || || || |||||||| || |||| | || || | |||||||| Sbjct 133594 GCAACGCCTGATCTTCGCCGGCAAGCAACTAGAAGATGGCAGAACTCTTTCTGACTATAA 133653 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| || || ||||| |||||||| || |||||||||| || ||| Sbjct 133654 CATCCAGAAAGAGTCCACACTTCATCTGGTTCTGCGTCTTCGAGGAGGA 133702 >seq3349 Length=644485 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| | || || ||||| || || | || || ||| | | Sbjct 96157 ATGCAAATCTTCGTAAAGACTTTGACAGGAAAGACCATCACGTTGGAAGTCGAGGCTTCT 96098 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| | || || || |||||||||||||| ||||| || || || ||| Sbjct 96097 GACACTATTGAAAATGTCAAAGCGAAGATTCAGGACAAGGAAGGAATCCCCCCGGATCAG 96038 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||| || || |||||||| |||| ||| || || | ||||||||| Sbjct 96037 CAGAGATTGATCTTTGCCGGAAAACAACTCGAAGATGGTCGCACGTTATCTGACTATAAT 95978 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || |||||||| || ||||| || | || ||||| ||||| Sbjct 95977 ATCCAGAAAGAATCCACCCTCCATCTGGTGCTTCGGCTTCGAGGTGG 95931 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| | || || || || || ||| | || |||||| | Sbjct 96613 ATGCAAATCTTCGTGAAGACTTTGACGGGGAAAACCATCACTTTGGAAGTTGAGGCTTCC 96554 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || ||||| || ||||| || || || || || ||| Sbjct 96553 GACACGATCGAGAACGTGAAGGCAAAGATTCAAGATAAGGAAGGGATCCCACCCGATCAG 96494 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| |||||||| || || | ||||| | | || || ||| Sbjct 96493 CAGCGTCTCATCTTTGCTGGAAAGCAACTTGAAGACGGACGTACTTTGTCTGATTACAAT 96434 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || ||||| || ||||| | || | || ||||| ||||| Sbjct 96433 ATACAGAAAGAATCTACCCTTCACTTGGTACTTCGGCTTCGAGGTGG 96387 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| | || || || || || || || || || ||| | Sbjct 97297 ATGCAGATTTTCGTGAAGACATTAACGGGAAAAACCATCACCCTCGAAGTCGAGGCCTCC 97238 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || ||||| || ||||| || || || || || ||| Sbjct 97237 GACACGATCGAGAACGTGAAGGCAAAGATTCAAGATAAGGAAGGGATCCCACCCGATCAG 97178 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || |||||||||||||| | ||||| | | || || || Sbjct 97177 CAGCGTCTCATCTTCGCCGGAAAGCAACTCGAGGACGGACGTACTTTGTCCGATTACAAC 97118 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || |||||||| || ||||| | || | || ||||| ||||| Sbjct 97117 ATTCAGAAGGAATCTACCCTTCACTTGGTGCTTCGACTTCGAGGTGG 97071 >seq5300 Length=1069934 Score = 143 bits (158), Expect = 3e-29 Identities = 148/194 (76%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 27400 ACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAG 27459 || || ||||| || ||||| ||||| || || || |||||||| || || || || || Sbjct 717740 ACCATTATGCAGATTTTTGTGAAGACTCTCACGGGTAAGACTATAACCCTCGAAGTAGAA 717799 Query 27460 TCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCA 27519 | ||| ||||| |||| |||||||||||||||| || ||||| |||||||| || Sbjct 717800 GCCTCTGACTCCATTGAAAATGTGAAGGCTAAAATTCAAGATAAGGAAGGAATTCCACCT 717859 Query 27520 GACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGAC 27579 || ||||| || || ||||||||||| || ||| | || |||| ||||| || | ||| Sbjct 717860 GATCAGCAACGACTTATTTTTGCTGGCAAACAATTGGAAGATGGACGTACTCTTTCTGAC 717919 Query 27580 TATAATGTCCAAAA 27593 ||||| ||||||| Sbjct 717920 TATAACATCCAAAA 717933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570247002870160