Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Harpegnathos_20saltator_20[refseq_20GCF_5F000147195.1_202010-09-17] 8,893 sequences; 294,465,601 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq3349 111 1e-19 seq8311 93.3 3e-14 seq5300 86.0 4e-12 >seq3349 Length=644485 Score = 111 bits (122), Expect = 1e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||| || | |||||||| ||||| ||||| ||||| || || ||||| Sbjct 96615 CCGCCACGAAGTCGGAGTACCAAATGCAGAGTAGATTCCTTCTGAATATTGTAGTCTGAC 96674 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||||| |||| || || |||||||| ||||| || | | ||| || || || || Sbjct 96675 AAAGTTCGTCCGTCCTCGAGCTGTTTACCCGCAAAGATCAGTCTCTGCTGATCAGGTGGA 96734 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTC-GCTCTCCA 34657 | || || |||||| ||| ||| | || || | ||| |||||| ||| |||| Sbjct 96735 ATGCCTTCTTTGTCT-TGAATTTTCGCCTTCACATTCTCAATGGTGTCTGATGCT-TCCA 96792 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| ||| |||||||| || || | ||||| || ||||||||||| Sbjct 96793 CTTCCAAGGTAATCGTTTTTCCAGTCAGGGTTTTGACGAAAATCTGCAT 96841 Score = 109 bits (120), Expect = 3e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||| || | |||||| || || || ||||| |||||||| ||||| || Sbjct 97071 CCACCTCGAAGTCGAAGCACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAATCGGAC 97130 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || |||| || ||||| || ||||| || || | |||||| || || || || Sbjct 97131 AAAGTACGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATGAGACGCTGCTGATCGGGTGGG 97190 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658 | || ||||| ||| |||||| | || ||| | || ||||| | ||| || Sbjct 97191 ATCCCTTCCTTATCTTGAATCTTT-GCCTTCACGTTCTCGATCGTGTCGGAGGCCTCGAC 97249 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 ||| | ||| || ||||| || ||||| || ||||| |||||||||||| || Sbjct 97250 TTCGAGGGTGATGGTTTTTCCCGTTAATGTCTTCACGAAAATCTGCATGGTG 97301 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||| || | ||||| || || ||| || || || ||||| ||||| || Sbjct 95019 CCACCTCGAAGTCGAAGCACCAGGTGAAGGGTGGATTCTTTCTGGATGTTGTAATCAGAC 95078 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| ||||||||||| ||||| ||||| | || || || || || Sbjct 95079 AGGGTGCGTCCGTCTTCTAGTTGTTTACCCGCAAAGATTAATCTTTGCTGATCGGGAGGG 95138 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | ||||| |||||| ||| ||| | ||||| | || ||||| ||| || | Sbjct 95139 ATACCCTCTTTGTCTTGGAT-TTTCGCCTTAACATTCTCGATGGTGTCGGATGCT-TCAA 95196 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| || || || || || ||||| || ||||| || |||||||| Sbjct 95197 CCTCCAACGTGATGGTCTTTCCTGTTAAAGTCTTCACGAAGATCTGCAT 95245 Score = 96.9 bits (106), Expect = 2e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||| ||||| || ||||| |||||||| || || | || || Sbjct 96852 AGACGAAGAACCAAATGCAGAGTCGATTCTTTTTGGATGTTATAGTCGGATAACGTGCGA 96911 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | |||||||||||||| || ||||| || || | |||||| ||||| || | ||| ||| Sbjct 96912 CCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGATCCGGGGGGATTCCTTCC 96971 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668 || || ||||| || | | ||| ||||| ||| || |||| || Sbjct 96972 TTATCCTGAATCTTCGCCTTGACATTTTCAATAGTGTCGGAAGCCTCAACCTCCAACGTG 97031 Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || ||||| || ||||| || |||||||| Sbjct 97032 ATGGTCTTCCCCGTTAAAGTCTTCACGAAGATCTGCAT 97069 Score = 95.1 bits (104), Expect = 8e-15 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| ||||| | || | || || || || ||||||||||| ||||| || Sbjct 94790 GCCACCTCTGAGACGAAGTACAAGGTGAAGCGTAGATTCTTTTTGAATGTTGTAATCGGA 94849 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | || || ||||||| ||||||||||| ||||| ||||| | || || || || || Sbjct 94850 CAAGGTGCGTCCGTCTTCTAGTTGTTTACCCGCAAAGATTAATCTTTGCTGATCGGGAGG 94909 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCC 34656 | ||||| |||||| ||| ||| | ||||| | || ||||| ||| || Sbjct 94910 GATACCCTCTTTGTCTTGGAT-TTTCGCCTTAACATTCTCGATGGTGTCGGATGCT-TCA 94967 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || |||| || || || || || ||||| || ||||| || |||||||| Sbjct 94968 ACCTCCAACGTGATGGTCTTTCCTGTTAAAGTCTTCACGAAGATCTGCAT 95017 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||| || | |||| || || ||| || || || ||||| ||||| || Sbjct 95247 CCACCTCGAAGTCGAAGTACCAGGTGAAGGGTGGATTCTTTCTGGATGTTGTAATCAGAC 95306 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| ||||||||||| ||||| ||||| | || || || || || Sbjct 95307 AGGGTGCGTCCGTCTTCTAGTTGTTTACCCGCAAAGATTAATCTTTGCTGATCGGGAGGG 95366 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | ||||| |||||| ||| ||| | ||||| | || ||||| ||| || | Sbjct 95367 ATACCCTCTTTGTCTTGGAT-TTTCGCCTTAACATTCTCGATGGTGTCGGATGCT-TCAA 95424 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| || || || || || ||||| || ||||| || |||||||| Sbjct 95425 CCTCCAACGTGATGGTCTTTCCTGTTAAAGTCTTCACGAAGATCTGCAT 95473 Score = 91.5 bits (100), Expect = 9e-14 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||| || | || || || || || ||||| |||||||| || || || Sbjct 96159 CCACCTCGAAGTCGAAGTACTAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGAC 96218 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || || |||||||| |||||||| | | ||| || || ||||| Sbjct 96219 AGAGTGCGTCCGTCCTCGAGCTGTTTACCCGCAAATATGAGCCTCTGCTGATCAGGCGGG 96278 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658 | ||| || |||||| ||||| | ||| || | || || || | ||| || Sbjct 96279 ATTCCTTCTTTGTCTTGAATCTTA-GCTTTCACATTCTCGATGGTATCGGAGGCCTCGAC 96337 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| || || || || || || || |||||||| |||||||||||| Sbjct 96338 CTCCAACGTGATGGTCTTCCCCGTCAAAGTTTTCACGAAAATCTGCATG 96386 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| ||| || | ||||| || || || || || || || || ||||| || Sbjct 96386 GCCACCTCGAAGCCGAAGTACCAAGTGAAGGGTAGATTCTTTCTGTATATTGTAATCAGA 96445 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | || || ||||||||||||| || || ||||| || | |||||| || || || || Sbjct 96446 CAAAGTACGTCCGTCTTCAAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGATCGGGTGG 96505 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | || ||||| ||| ||| |||| || ||| | || ||||| ||| | Sbjct 96506 GATCCCTTCCTTATCT-TGAATCTTTGCCTTCACGTTCTCGATCGTGTCGGAAGCCTCAA 96564 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || || ||||| || || || || ||||| || || ||||| Sbjct 96565 CTTCCAAAGTGATGGTTTTCCCCGTCAAAGTCTTCACGAAGATTTGCAT 96613 >seq8311 Length=725843 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| |||||||| |||| ||| || ||| ||| || || |||||||| || ||| Sbjct 133701 CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGACTCTTTCTGGATGTTATAGTCAGAA 133642 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | ||||| ||||| || ||||| || || | || || || || || || Sbjct 133641 AGAGTTCTGCCATCTTCTAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGATCAGGAGGA 133582 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTT-CGCTCTCCA 34657 | || || |||||| || ||||| || || | |||||||| |||| || | Sbjct 133581 ATACCTTCTTTGTCTTGTAT-TTTTGCCTTTACATTCTCTATTGTGTCAGACGCT-TCAA 133524 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | || || || ||||| || | ||||| || ||||||||||| Sbjct 133523 CCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTTACGAAAATCTGCAT 133475 Score = 89.7 bits (98), Expect = 3e-13 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | ||| || || || ||||| || ||| |||||| || ||||| || || || Sbjct 133930 GCCTCCGCGAAGTCGTAAGACTAAATGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGA 133871 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || |||| | ||||| | || || || ||||| || ||||| || || ||||| || Sbjct 133870 TAGAGTTCTGCCATCTTCCAACTGCTTGCCAGCAAAGATCAAACGTTGCTGATCCGGAGG 133811 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTC-GCTCTCC 34656 | |||||| ||||| ||| ||| | ||| || | |||||||| ||| || Sbjct 133810 AATTCCCTCTTTGTCC-TGAATTTTGGCTTTTACATTCTCTATTGTGTCAGATGCT-TCA 133753 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | || || || ||||| || | ||||| || ||||||||||| Sbjct 133752 ACCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTTACGAAAATCTGCAT 133703 >seq5300 Length=1069934 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 34519 TTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATT 34578 ||||| |||||||| || ||||| || || | ||||| | |||||| || ||||| || Sbjct 717933 TTTTGGATGTTATAGTCAGAAAGAGTACGTCCATCTTCCAATTGTTTGCCAGCAAAAATA 717874 Query 34579 AAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA- 34637 | || || || || || || | ||| ||||| ||| ||| ||| | || || | Sbjct 717873 AGTCGTTGCTGATCAGGTGGAATTCCTTCCTTATCT-TGAATTTTAGCCTTCACATTTTC 717815 Query 34638 AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAA 34697 ||| | ||| | || ||||| | |||||| || ||||| || | || |||||||| Sbjct 717814 AATGGAGTCAGAGGCTTCTACTTCGAGGGTTATAGTCTTACCCGTGAGAGTCTTCACAAA 717755 Query 34698 AATCTGCAT 34706 ||||||||| Sbjct 717754 AATCTGCAT 717746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314695488524069