Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Harpegnathos_20saltator_20[refseq_20GCF_5F000147195.1_202010-09-17] 8,893 sequences; 294,465,601 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq8630 98.7 1e-15 seq3742 89.7 7e-13 seq6989 86.0 9e-12 >seq8630 Length=35068 Score = 98.7 bits (108), Expect = 1e-15 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 46920 ATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTC 46979 ||||||||| ||||||||||| || || || || || || || || ||||| | || || Sbjct 13722 ATACATTTCGGAATGAATGTTCTCTATTGCAATTTGGAAGCCATAGAAACAACGCGCCTC 13663 Query 46980 AGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACT 47039 | ||||| || ||| || |||| |||| | ||| ||||| || || || ||| Sbjct 13662 TGAAATCTTAACTTCTTGGCAGAATCTTTCAATAAGATTTTCATTGACGATACCGTCAGA 13603 Query 47040 AGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTT 47096 ||| ||||| || ||||| || || || |||||| ||||||||| | ||| ||| Sbjct 13602 AGCGGCAAAGAACGCCAACACGTGGGATATGAAATATCTTTCATCGGAATTCAATTT 13546 >seq3742 Length=701801 Score = 89.7 bits (98), Expect = 7e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGA 76578 |||||||||||| ||||| |||||| || |||||||| |||| ||||||||||| Sbjct 290093 TTCAAATTCATCACCCCAGACATCAATTAATCCAGGACACTCATGTGGACACATCAAACT 290034 Query 76579 CCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 76638 ||| ||| |||| || ||| ||| |||||| | ||| ||| |||||| ||| ||| Sbjct 290033 CCAATCAGCATCATCAAAAACACGTCGCATAAATATATCTGGTGTCCATAATGCATAAAA 289974 Query 76639 TAGATCT 76645 | |||| Sbjct 289973 CATATCT 289967 >seq6989 Length=241196 Score = 86.0 bits (94), Expect = 9e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 75704 AGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTG 75763 ||||| ||||| | ||| || ||||| ||||| || | || ||| ||||| ||| Sbjct 6493 AGATGCGGATTGATAATGACGAACTCTCCGGACAACACACGTCTTACGTAGATATTGCTG 6434 Query 75764 GTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATA 75823 || || | || | || || ||||| ||||||||||| ||||| || || || ||||| Sbjct 6433 GTGTACGCCTCAATGGACTCGTTGTTGCCCAAAATTTGCGCAGTCGACGCGGTTGGCATC 6374 Query 75824 GGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTC 75883 ||||| | ||| | ||||| | || ||| | |||||| || | | | | Sbjct 6373 GGTGCGATCAAGAGCGAGTTTCTCACTCCGTGTTTCGCGATTTTCGTCTTCAACTCATCC 6314 Query 75884 CAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAAT 75933 |||||||| | ||| | || ||||| ||| | |||||||| ||||| Sbjct 6313 CAATCCCATAAATCCGTCGGCTTAACATTCCACATGTCGTATTGCAGAAT 6264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712855148429760