Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Harpegnathos_20saltator_20[refseq_20GCF_5F000147195.1_202010-09-17] 8,893 sequences; 294,465,601 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq8311 118 1e-21 seq3349 102 8e-17 seq2953 87.8 2e-12 >seq8311 Length=725843 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || ||||| || | |||||||||| ||||||||| ||||| ||||| || Sbjct 133930 GCCTCCGCGAAGTCGTAAGACTAAATGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGA 133871 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || | | || || | ||||||||| || || |||| || || || |||| || Sbjct 133870 TAGAGTTCTGCCATCTTCCAACTGCTTGCCAGCAAAGATCAAACGTTGCTGATCCGGAGG 133811 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | ||| |||||| ||| |||| |||| || | | ||||| | || | Sbjct 133810 AATTCCCTCTTTGTCC-TGAATTTTGGCTTTTACATTCTCTATTGTGTCAGATGCTTCAA 133752 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || |||||||| || || ||||||||||||||||| Sbjct 133751 CCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTTACGAAAATCTGCAT 133703 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||||||| || ||| ||| ||||| ||||||||||| || Sbjct 133701 CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGACTCTTTCTGGATGTTATAGTCAGAA 133642 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | | || || || |||||||||||||| |||||||| || || || | ||| Sbjct 133641 AGAGTTCTGCCATCTTCTAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGATCAGGAGGA 133582 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | || ||||| |||||| ||| | | | ||||| || || ||| Sbjct 133581 ATACCTTCTTTGTCTTGTATTTTTGCCTTTACATTCTCTATTGTGTCAGACGCTTCAACC 133522 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || || |||||||| || || ||||||||||||||||| Sbjct 133521 TCAAGAGTGATGGTCTTACCCGTGAGGGTTTTTACGAAAATCTGCAT 133475 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| || |||||||| || ||| ||||||||| ||||||||||| || Sbjct 133473 CCTCCTCGAAGACGCAAAACCAGATGAAGTGTGGACTCCTTCTGGATGTTATAGTCAGAA 133414 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | |||| || | ||||| |||||||| ||||| || ||||| |||| ||| Sbjct 133413 AGAGTTCTGCCGTCTTCTAATTGCTTTCCGGCGAAGATCAGACGTTGTTGATCCGGAGGA 133354 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||| || ||| |||||| |||| || | | ||||| | || || Sbjct 133353 ATTCCCTCTTTATCCTGGATTTTA-GCTTTTACATTCTCTATTGTGTCAGATGCTTCAAC 133295 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || ||||||| || || |||||||||||||||| Sbjct 133294 CTCAAGAGTGATGGTCTTACCCGCGAGGGTTCTTACGAAAATCTGCAT 133247 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||||||| || ||| ||||||||| || |||||||| || Sbjct 133245 CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGACTCCTTCTGGATATTATAGTCAGAA 133186 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | |||| || | ||||| |||||||| ||||| || || || |||| ||| Sbjct 133185 AGAGTTCTGCCGTCTTCTAATTGCTTTCCGGCGAAGATCAGACGTTGCTGATCCGGAGGA 133126 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||| |||||| |||||| |||| || | | ||||| | || || Sbjct 133125 ATTCCCTCTTTGTCCTGGATTTTA-GCTTTTACATTCTCTATTGTGTCAGATGCTTCAAC 133067 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || ||||||| || || |||||||||||||||| Sbjct 133066 CTCAAGAGTGATGGTCTTACCCGCGAGGGTTCTTACGAAAATCTGCAT 133019 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||||||| || ||| ||||||||| || |||||||| || Sbjct 133017 CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGACTCCTTCTGGATATTATAGTCAGAA 132958 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | |||| || || ||||||||||| || ||||| || || || || | ||| Sbjct 132957 AGAGTTCTGCCGTCTTCCAGTTGCTTGCCGGCAAAGATCAGACGTTGCTGATCTGGAGGA 132898 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||| || ||| ||| | || || | || | | ||||| | || || Sbjct 132897 ATTCCCTCTTTATCC-TGAATCTTAGCCTTTACATTTTCTATTGTGTCAGAAGCTTCGAC 132839 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || || || || || || || ||||| || || || |||||||| Sbjct 132838 CTCAAGAGTGATGGTCTTGCCTGTGAGAGTCTTCACAAAGATTTGCATGTT 132788 >seq3349 Length=644485 Score = 102 bits (112), Expect = 8e-17 Identities = 142/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 |||||||||||||| |||||||| || ||||| |||| |||||||| || || || ||| Sbjct 96195 TCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCGAGCTGTTTACCCGCAAAT 96254 Query 41732 ATCAGGCGCTGTTGGTC-CGCGGGAACGCTCTCCTTGTCCATGATTTTTTGC-TTCAACG 41789 || || | ||| || || |||||| || || |||| | ||| | || || |||| Sbjct 96255 ATGAGCCTCTGCTGATCAGGCGGGATTCCT-TCTTTGT-CTTGAATCTTAGCTTTCACAT 96312 Query 41790 ACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | || ||| | ||| ||||||| ||| || || || ||||||| || || | Sbjct 96313 TCTCGATGGTATCGGAGGCCTCGACCTCCAACGTGATGGTCTTCCCCGTCAAAGTTTTCA 96372 Query 41850 CGAAAATCTGCATG 41863 |||||||||||||| Sbjct 96373 CGAAAATCTGCATG 96386 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || || || | |||| |||||| || ||||||||||| || ||||| || Sbjct 96615 CCGCCACGAAGTCGGAGTACCAAATGCAGAGTAGATTCCTTCTGAATATTGTAGTCTGAC 96674 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || |||| |||||||| || || || || ||||| | ||| || || | ||| Sbjct 96675 AAAGTTCGTCCGTCCTCGAGCTGTTTACCCGCAAAGATCAGTCTCTGCTGATCAGGTGGA 96734 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || || |||| | ||| |||| | ||||| | | ||||| | ||||| Sbjct 96735 ATGCCTTCTTTGT-CTTGAATTTTCGCCTTCACATTCTCAATGGTGTCTGATGCTTCCAC 96793 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || |||||||| || ||||| || || |||||||||||||| Sbjct 96794 TTCCAAGGTAATCGTTTTTCCAGTCAGGGTTTTGACGAAAATCTGCAT 96841 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||||||||| | |||| |||||| || || || || |||||||||||||| Sbjct 96843 CCACCGCGTAGACGAAGAACCAAATGCAGAGTCGATTCTTTTTGGATGTTATAGTCGGAT 96902 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || || || || || || || || |||| | |||||| |||| ||| Sbjct 96903 AACGTGCGACCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGATCCGGGGGG 96962 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||| ||| ||| | || || | || | | ||||||| | ||| || Sbjct 96963 ATTCCTTCCTTATCC-TGAATCTTCGCCTTGACATTTTCAATAGTGTCGGAAGCCTCAAC 97021 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| ||| || || || ||||| | ||||| ||||| |||||||| Sbjct 97022 CTCCAACGTGATGGTCTTCCCCGTTAAAGTCTTCACGAAGATCTGCAT 97069 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | ||||||||| || ||| || ||||| || |||||||| || Sbjct 95930 GCCACCTCGAAGCCGAAGCACCAGATGGAGGGTGGATTCTTTCTGGATATTATAGTCAGA 95989 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | ||||| | || ||||| || || ||||| || |||| | ||| || |||| ||| Sbjct 95990 TAACGTGCGACCATCTTCGAGTTGTTTTCCGGCAAAGATCAATCTCTGCTGATCCGGGGG 96049 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCA 41813 | | ||||||||| ||| | || |||| || || |||||| | ||| | Sbjct 96050 GATTCCTTCCTTGTCC-TGAATCTTCGCTTTGACATTTTCAATAGTGTCAGAAGCCTCGA 96108 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | |||| ||| || || || || |||| ||||||||||| || ||||| Sbjct 96109 CTTCCAACGTGATGGTCTTTCCTGTCAAAGTCTTTACGAAGATTTGCAT 96157 Score = 98.7 bits (108), Expect = 9e-16 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| || || || |||||||||||||| || ||||| Sbjct 97071 CCACCTCGAAGTCGAAGCACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAATCGGAC 97130 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGG 41754 | || || |||| ||||| ||||| |||||||| || || ||||| || || | ||| Sbjct 97131 AAAGTACGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATGAGACGCTGCTGATCGGGTGGG 97190 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCA 41813 | | || ||||| | | ||| | |||| ||||| | | |||||| | ||| | Sbjct 97191 ATCCCT-TCCTTAT-CTTGAATCTTTGCCTTCACGTTCTCGATCGTGTCGGAGGCCTCGA 97248 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || | || || ||||| ||||| | ||||| ||||||||||||||| Sbjct 97249 CTTCGAGGGTGATGGTTTTTCCCGTTAATGTCTTCACGAAAATCTGCATG 97298 >seq2953 Length=1164165 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 || ||||||||||| || || | || ||| | || || | ||| ||||||||||| ||| Sbjct 120059 TTTTGAATGTTATAATCAGATAAAGTACGCCCATCCTCTAACTGTTTGCCGGCGAAGATC 120000 Query 41735 AGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC 41794 || |||||||| || | |||| | ||| |||| | ||| | || |||| || | Sbjct 119999 AGTCGCTGTTGATCTGGTGGAATCCCCTCTTTGT-CTTGAATCTTAGCTTTCACATTTTC 119941 Query 41795 -ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAA 41853 | || ||| | || ||||| | || || || |||||||| || || || ||||| Sbjct 119940 GATGGTATCGGATGCTTCTACCTCGAGGGTAATTGTCTTACCCGTGAGGGTTTTCACGAA 119881 Query 41854 AATCTGCATG 41863 |||||||||| Sbjct 119880 AATCTGCATG 119871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462252609131600