Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20elevatus_20bari_20[genbank_20GCA_5F900068365.1_202017- 04-25] 302,727 sequences; 364,783,738 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq50497 150 2e-31 seq22292 116 3e-21 seq22291 113 4e-20 seq84803 111 1e-19 seq225328 105 6e-18 seq19754 102 7e-17 seq20505 98.7 9e-16 seq84804 93.3 4e-14 >seq50497 Length=2916 Score = 150 bits (166), Expect = 2e-31 Identities = 343/510 (67%), Gaps = 12/510 (2%) Strand=Plus/Plus Query 21569 AAAATCGTGGCGGCCTACTTTGTCGAATGGGGAGTGTACCTGAGACAGTTCCCCGTCGAC 21628 ||| | |||| |||||||| || |||||||| || || | || | |||||||| || Sbjct 673 AAAGTTGTGGGTGCCTACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTGGAT 732 Query 21629 AAGGTGCCGGCGCCGAATCTATCACATATACTATACGGCTTCGTGCCGATATGCGGAGGC 21688 | || || ||||| | || | || |||||||| | || || ||||| || Sbjct 733 CGTATACCTATACCTAATCTTACTCACTTGCTCTACGGCTTTATTCCAATTTGCGGCGGT 792 Query 21689 GACGGCATCAACGACGCGCTAAAAACGGTGCCTGGCAGTTTTGAGGCATTGCAACGTTCG 21748 || |||||||| || ||||| | | |||||||| | ||| | || || || Sbjct 793 GATGGCATCAATGATAGTTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTACAGCGGTCC 852 Query 21749 TGTGCGGGTCGGGCCGATTTCAAGGTGGCTATACACGATCCGTGGGCCGCAATACAAAAG 21808 ||| || || | || ||||| || | || |||||||| ||||| ||| ||||||| Sbjct 853 TGTAGCGGCCGTGAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAA 912 Query 21809 CCCCAAAAGGGCGTCTCGTCATGGAACGAACCGTACAAAGGCAACTTTGGTCAACTGATG 21868 || ||||| || | || ||||||||||| || || |||||||||||||| ||| | ||| Sbjct 913 CCACAAAAAGGATTGTCTTCATGGAACGAGCCCTATAAAGGCAACTTTGGCCAATTAATG 972 Query 21869 GCAATGAAGAGGGCCAATCCTCACATTAAAG--TGTTCGCATCGATCGGCGGATGGACTC 21926 || | || || ||| | ||| ||| | ||| | || || || || ||||| | Sbjct 973 TCACTAAAACAAGCACGCCCTGA-ATTGAAGATTCTTC-CCTCTATTGGAGGGTGGACGC 1030 Query 21927 TGTCCGATCCATT----TTATCATATGCACGACGCCGACGTCAGACGGGTGTTTATCGAT 21982 | ||||||| || || | | || || | | | | ||| ||| | | Sbjct 1031 TTGCCGATCCTTTCTTCTTTTTAGTTG-ACAAATCTAAGAGAACACG---ATTTGTGCAG 1086 Query 21983 TCAGTTGAAGAATTTCTGCTCACGTGGAAGTTCTATGACGGCGTCCACATCGATTGGGAG 22042 ||||| | || ||||| || || ||||| |||| || || || | |||||||||||| Sbjct 1087 TCAGTAAAGGAGTTTCTTCTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAG 1146 Query 22043 TTTCCCGGCGGCAAGGGAGCCAACCCCGAC 22072 || || || ||||| || || ||||| ||| Sbjct 1147 TTCCCTGGTGGCAAAGGTGCTAACCCTGAC 1176 >seq22292 Length=1070 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||||||||| || ||||||||| || ||||| ||| || Sbjct 671 ACCAAGTGAAGGGTGGACTCTTTTTGGATATTGTAATCGGACAGGGTGCGGCCATCTTCC 612 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || || ||||| |||| ||||| || ||||| ||||| || || ||||| ||| | Sbjct 611 AGTTGCTTACCAGCAAAGATAAGACGTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGA 552 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || |||||| | ||| | |||||| | ||| || || | || | ||||| Sbjct 551 ATCTTAGCTTTAACATTTTCAATGGTGTCGGATGGCTCAACTTCCAAAGTTATTGTTTTT 492 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || ||||| ||||| || ||||| Sbjct 491 CCAGTAAGTGTTTTGACAAATATTTGCAT 463 Score = 107 bits (118), Expect = 2e-18 Identities = 154/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| ||||| | || |||||||||||||| |||||||| || |||||| ||| || Sbjct 444 CACTAAGTGCAGGGTTGACTCTTTTTGAATATTGTAATCAGACAAAGTGCGACCATCTTC 385 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTG 118647 | || |||||||| | ||||||||||| || || || || ||||| ||||| | ||| Sbjct 384 CAATTGCTTTCCAGCAAAAATGAGACGCTGTTGGTCTGGGGGGATGCCTTCCTTATCCTG 325 Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTT 118706 | ||||| ||| || | |||| ||||| | || | || || || | ||| | || Sbjct 324 T-ATTTTAGCTTTCACATTCTCGATTGTGTCAGATGGT-TCTACTTCCAGGGTAATGGTC 267 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || |||| ||||| ||||| || ||||| Sbjct 266 TTTCCAGTCAATGTTTTGACAAATATTTGCAT 235 Score = 89.7 bits (98), Expect = 4e-13 Identities = 110/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 118592 CTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAAT 118651 |||||| ||||| ||||||||||||| || || || || ||||||||||||||| || Sbjct 1065 CTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGGAT 1006 Query 118652 TTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 ||| ||||| | ||||| ||||| | || | || ||||| | || | || || | Sbjct 1005 TTTAGCCTTAACATTTTCGATAGTGTCGGATGGT-TCCACCTCCAAAGTGATGGTCTTCC 947 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || ||||| || || || |||||||| Sbjct 946 CAGTAAGAGTCTTAACGAAGATCTGCAT 919 >seq22291 Length=1216 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| ||||| |||||||| || || ||||| ||| || | || || || Sbjct 940 GTAGACTCCTTTTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCCAATTGCTTACCG 881 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| |||||||||||||| ||||| |||||||| |||||| |||||| ||| Sbjct 880 GCAAAGATAAGACGCTGCTGATCAGGAGGGATGCCCTCTTTGTCTTGAATTTTAGCTTTT 821 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||| | || || | | || || || | ||| | || || || || || ||| Sbjct 820 ACATTTTCAATAGTATCAGAGGGTTCCACTTCCAGGGTAATGGTCTTTCCAGTTAGGGTT 761 Query 118722 TTTACAAAAATCTGCAT 118738 || |||||||||||||| Sbjct 760 TTAACAAAAATCTGCAT 744 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| |||||||| | ||||| ||||||||||| ||||| || | |||||| || Sbjct 272 CAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAAAGAGTGCGTCCGTC 213 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || | || ||||||||| | || | ||| || ||||| ||||| ||||| |||||||| Sbjct 212 TTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTC 153 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | |||||| ||| || | ||| | || || | || || || | || | || Sbjct 152 TTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTAATGGT 93 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || || || ||||| ||||| |||||||| Sbjct 92 TTTACCCGTAAGTGTTTTCACAAAGATCTGCAT 60 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-G 118568 |||| || || | | ||| || || || | ||||| || |||||||| || ||||| | Sbjct 516 TACCGCCACGAAGCCGCAATACTAAATGTAGGGTAGATTCCTTTTGAATATTATAATCAG 457 Query 118569 CTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGA 118628 | || || || ||| || || ||||||||||| | || || | ||| ||||| || Sbjct 456 ATAAT-GTACGGCCATCTTCCAGTTGTTTTCCAGCAAAAATCAGCCTCTGTTGATCTGGG 398 Query 118629 GGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCG 118688 || || ||||| |||||| || ||| || || | ||| | ||||| | | || Sbjct 397 GGAATACCCTCTTTGTCTTGGATCTTTGCCTTCACATTTTCAATAGTGTCGGAGGGTTCT 338 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| | || | ||||| || || ||||| || ||||| |||||||| Sbjct 337 ACCTCTAAAGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 288 >seq84803 Length=1104 Score = 111 bits (122), Expect = 1e-19 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCTCGAGCTGTTTTC 118599 ||||| || || ||||||||||| || | | |||| ||| ||| || || ||||||| Sbjct 332 GTAGATTCCTTCTGAATGTTGTAGTC--TGACAGTGTACGTCCATCTTCAAGTTGTTTTC 275 Query 118600 CAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTT 118659 ||||| | || || | ||| || || || || || |||||||| ||| ||||||| || Sbjct 274 CAGCGAAAATAAGCCTCTGTTGGTCTGGGGGAATCCCCTCCTTATCTTGAATTTTTGCTT 215 Query 118660 TAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAG 118719 |||| | ||| | ||||| | ||| || || | || | ||||| || || || | Sbjct 214 TAACATTTTCAATTGTGTCAGAAGGCTCAACTTCAAGAGTAATAGTTTTACCAGTAAGCG 155 Query 118720 TTTTTACAAAAATCTGCAT 118738 ||||||||||||| ||||| Sbjct 154 TTTTTACAAAAATTTGCAT 136 >seq225328 Length=614 Score = 105 bits (116), Expect = 6e-18 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || |||||||| ||||| |||||||| || |||||| ||| || Sbjct 215 ACCAAGTGCAGGGTTGACTCTTTCTGAATATTGTAATCAGACAAAGTGCGACCATCTTCC 156 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTGT 118648 | || |||||||| | ||||||||||| || || || || ||||||||||| | |||| Sbjct 155 AATTGCTTTCCAGCAAAAATGAGACGCTGTTGGTCTGGGGGGATGCCCTCCTTATCCTGT 96 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTT 118707 ||||| ||| || | |||| || || | || | || || || | ||| | || | Sbjct 95 -ATTTTAGCTTTGACATTCTCGATTGTATCAGATGGT-TCTACTTCCAGGGTAATAGTCT 38 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || |||| ||||| ||||| || ||||| Sbjct 37 TTCCAGTCAATGTTTTGACAAATATTTGCAT 7 >seq19754 Length=5595 Score = 102 bits (112), Expect = 7e-17 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCTCGAGCTGTTTTC 118599 ||||| ||||| ||||||||||||| | |||||| |||| ||| || ||||| |||| Sbjct 4914 GTAGATTCTTTCTGAATGTTGTAAT--CAGATAGTGTGCGTCCATCTTCTAGCTGCTTTC 4857 Query 118600 CAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTT 118659 |||| | || || | |||||||| || || || ||||| || || |||||| || Sbjct 4856 CAGCAAAAATAAGTCTTTGCTGATCTGGGGGAATTCCCTCTTTATCCTGAATTTTCGCTT 4797 Query 118660 TAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAG 118719 |||| | ||| | || || | ||| || || | || | || ||||| ||||| | Sbjct 4796 TAACATTTTCAATTGTATCAGAAGGCTCAACTTCCAAAGTGATAGTCTTGCCAGTCAGTG 4737 Query 118720 TTTTTACAAAAATCTGCAT 118738 | ||||| ||||| ||||| Sbjct 4736 TCTTTACGAAAATTTGCAT 4718 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/200 (72%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCTCGAGCTGTTTTC 118599 ||||| || || ||||| ||||| || |||| | |||| ||| || ||||| |||| Sbjct 5142 GTAGATTCCTTCTGAATATTGTAGTCAG--ATAGCGTGCGTCCATCTTCAAGCTGCTTTC 5085 Query 118600 CAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTT 118659 |||| | || || | |||||||| || || |||||||| || || |||||| | Sbjct 5084 CAGCAAAAATAAGTCTTTGCTGATCTGGGGGAATGCCCTCTTTATCCTGAATTTTCGCCT 5025 Query 118660 TAACCTGTTCGACGGTGTCCGT-GCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 |||| | ||| | || || | ||| || || || | || | |||||||| ||||| Sbjct 5024 TAACATTTTCAATCGTATCAGAAGCT-TCCACTTCCAGTGTGATAGTTTTGCCAGTCAGT 4966 Query 118719 GTTTTTACAAAAATCTGCAT 118738 ||||||||||| || ||||| Sbjct 4965 GTTTTTACAAATATTTGCAT 4946 >seq20505 Length=7550 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||||||||| | || | ||| | || | ||| || || |||||||||||||| || Sbjct 4620 TACCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAG 4561 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || || ||| || || ||||| ||||| |||| | ||| ||||| || || | Sbjct 4560 ACAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGTG 4501 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || ||||| ||| ||||| ||| || | ||| | || || | | ||| | Sbjct 4500 GAATACCTTCCTTATCTTGGATTTTAGCTTTTACATTTTCTATAGTATCAGAGGCCTCCA 4441 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | ||| | ||||| || || || || || || ||||| ||||| Sbjct 4440 CCTCAAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCAT 4392 >seq84804 Length=1020 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||| ||||| || || || || || || || ||| ||| || || || |||||| Sbjct 515 GTAGATTCTTTCTGGATATTATAGTCTGACAATGTACGCCCATCTTCCAGTTGCTTTCCA 456 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | || || | || ||||| ||||| || || ||||||||| |||||| ||| Sbjct 455 GCGAAAATCAGTCTTTGTTGATCTGGAGGAATACCTTCCTTGTCTTGAATTTTAGCCTTA 396 Query 118662 ACCTGTTCGACGGTGTCCGT-GCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | ||| | || || | ||| || || || | ||| | ||||| || ||||| || Sbjct 395 ACATTTTCTATTGTATCAGAAGCT-TCCACTTCCAAGGTGATAGTTTTCCCAGTCAGTGT 337 Query 118721 TTTTACAAAAATCTGCAT 118738 ||||||||||| ||||| Sbjct 336 CTTTACAAAAATTTGCAT 319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432229789111084