Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20elevatus_20bari_20[genbank_20GCA_5F900068365.1_202017- 04-25] 302,727 sequences; 364,783,738 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq40423 179 3e-40 seq50497 104 2e-17 seq84803 95.1 1e-14 seq128380 89.7 4e-13 seq19754 89.7 4e-13 >seq40423 Length=5538 Score = 179 bits (198), Expect = 3e-40 Identities = 182/237 (77%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 13216 ACTGGCCCCGTTGTATGAAGCAGAGACCCGAGCAGATGGCGGATGCCGGTTTCTTCTACA 13275 ||||||| || |||||||||||| || ||| | | || || || || ||||| |||| Sbjct 1512 ACTGGCCTCGCAGTATGAAGCAGAAGCCTGAGGAACTCGCCGAAGCGGGATTCTTTTACA 1571 Query 13276 CTGGCTACGGTGACAATACAAAGTGCTTCTATTGTGACGGCGGATTGAAAGATTGGGAGC 13335 | ||| | |||||||| || ||||||||||| ||||| ||||| | || || |||||| Sbjct 1572 CCGGCCAGGGTGACAAAACTAAGTGCTTCTACTGTGATGGCGGGCTCAAGGACTGGGAGA 1631 Query 13336 CGGAAGATGTACCTTGGGAACAGCATGTAAGATGGTTCGACCGTTGCGCCTACGTTCAGC 13395 || || || || ||||| ||||| | | ||||||||||| ||||||||||| |||| Sbjct 1632 ACGACGACGTGCCGTGGGAGCAGCACGCGCGCTGGTTCGACCGGTGCGCCTACGTGCAGC 1691 Query 13396 TAGTCAAGGGTAGAGACTACGTACAGAAAGTCATCACGGAAGCCTGCGTGTTACCCG 13452 | ||||| || |||| ||||| ||||| || |||||||| || |||| | | |||| Sbjct 1692 TGGTCAAAGGCCGAGAGTACGTCCAGAAGGTGATCACGGAGGCGTGCGCGCTCCCCG 1748 >seq50497 Length=2916 Score = 104 bits (114), Expect = 2e-17 Identities = 328/501 (65%), Gaps = 12/501 (2%) Strand=Plus/Minus Query 6850 GTTCGCTCCCTTTCCTCCCGGAAACTCCCAGTCAATATCCACTCCGTCGAAAAACTTCCA 6909 ||| || || || || || || |||||||| || ||||| || || ||||| || ||||| Sbjct 1170 GTTAGCACCTTTGCCACCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTCCA 1111 Query 6910 CGTCTCCAGAAACTCGCGCACGCTCTGCACAAACACCCGACGCTTGGCGGAGTCGTGCAT 6969 || |||||||| || ||||||||| | ||| | | | || || Sbjct 1110 TGTTAGAAGAAACTCCTTTACTGACTGCACAAATCGTGTTCTCTTAG---ATTTGT-CAA 1055 Query 6970 CTT----GTAGAAGGGGTCGCTAAGCGTCCACCCGCCTATGGAGGGTAGTATAGTCAGAT 7025 || | |||| || ||| |||||||||||| || || ||||| || || ||| || Sbjct 1054 CTAAAAAGAAGAAAGGATCGGCAAGCGTCCACCCTCCAATAGAGGGAAGAATCTTCA-AT 996 Query 7026 TGGGGTTGTGGT-GTTTGATGGCCATCAGCTGGCCAAAATTACCCTTATACGGCTCGTCG 7084 | || ||| | |||| | | ||| | |||||||| || || ||||| ||||||| Sbjct 995 TCAGGGCGTGCTTGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTATAGGGCTCGTTC 936 Query 7085 TACGCCTCCACACCCTTTTGTGGTTTCTGTACGGCGCCCCACAAATCGTGTATACTCACT 7144 | | || || ||||||||||| |||| || |||| |||||| || ||| Sbjct 935 CATGAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACT 876 Query 7145 TTGAAATCGTCTCGGCCCGCGCACGATCTTTGCAACGCTT-CAAACGACCCCGGCACCTG 7203 ||||| || || ||||| || || | || | |||| |||| || | | || Sbjct 875 TTGAAGTCCTCACGGCCGCTACAGGACCGCTGTAGTGCTTGGAAACTGCCTTCG-ATCTC 817 Query 7204 TTTCAAGGCGTCGTTGAGTCCGTCTCCCCCGCAAATGGGCACAAATCCGTACAGCAAATG 7263 ||| || || |||| || || || |||||||| || | ||| ||||| ||||| || Sbjct 816 TTTTAAACTATCATTGATGCCATCACCGCCGCAAATTGGAATAAAGCCGTAGAGCAAGTG 757 Query 7264 GCTGAGATTGGGCACGGGCACCTTGTCTGCGGGAAACTGCCGTCCGTACACACCCCACTC 7323 | ||||| || | || | || |||| || | || || |||||||| || Sbjct 756 AGTAAGATTAGGTATAGGTATACGATCCACGGGGAATTTCCTAGGATAGACACCCCATTC 697 Query 7324 CACAAAGTACGCCGCCACCAC 7344 || ||||| || |||| || Sbjct 696 TACGAAGTAGGCACCCACAAC 676 >seq84803 Length=1104 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| | | ||| || || | || |||||||||||||||||||| | Sbjct 362 CCACCTCTCAGACGAAGTACTAAATGTAAAGTAGATTCCTTCTGAATGTTGTAGTCTGAC 303 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| || | || || ||||||||||| ||||| || | || ||||||||| || || Sbjct 302 AGTGTACGTCCATCTTCAAGTTGTTTTCCAGCGAAAATAAGCCTCTGTTGGTCTGGGGGA 243 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||| || ||||||| ||||| | | |||| | ||| || Sbjct 242 ATCCCCTCCTTATCTTGAATTTTTGCTTTAACATTTTCAATTGTGTCAGAAGGCTCAACT 183 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||||| || || || || || || || ||||| |||||||| Sbjct 182 TCAAGAGTAATAGTTTTACCAGTAAGCGTTTTTACAAAAATTTGCAT 136 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| | ||| | || | ||| || || || ||||| || || ||||| | Sbjct 590 CCACCTCTAAGTCTGAGAACAAGGTGAAGGGTAGATTCTTTCTGGATATTATAGTCTGAC 531 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | | ||| | || |||||||| ||||||||||| |||| | ||||| || ||||| Sbjct 530 AATGTGCGCCCATCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGA 471 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || |||||||| ||| ||| |||||| | | | || | | || || Sbjct 470 ATGCCTTCCTTGTCTTGAATCTTTGCCTTAACATTTTCGATAGTATCAGAAGCTTCTACT 411 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||||| || ||||| |||| || |||||||| |||||||| Sbjct 410 TCCAAAGTAATAGTTTTGCCAGTCAATGTTTTCACAAAAATTTGCAT 364 >seq128380 Length=670 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| | | ||| ||||| | || ||||||||||| |||||||| | Sbjct 533 CCACCTCTCAGACGAAGTACTAAGTGTAAAGTAGATTCCTTCTGAATATTGTAGTCAGAC 474 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| ||| | || || || || ||||| || || || | || |||||||| ||||| Sbjct 473 AGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGCCTTTGTTGGTCTGGAGGA 414 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||| || |||||| |||||| | | |||| ||| || Sbjct 413 ATTCCTTCCTTATCTTGAATTTTGGCCTTAACATTTTCGATTGTGTCAGAGGGCTCAACT 354 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || || ||||| ||||| ||||| ||||| |||||||| Sbjct 353 TCCAGTGTGATAGTTTTGCCAGTCAGTGTCTTTACAAATATTTGCAT 307 >seq19754 Length=5595 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| | | ||| || || | || ||||||||||| |||||||| | Sbjct 5400 CCACCTCTCAGACGAAGTACTAAATGTAAAGTAGATTCCTTCTGAATATTGTAGTCAGAC 5341 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| || | || || || || ||||| || || || | || ||||||||| ||||| Sbjct 5340 AGTGTACGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGCCTCTGTTGGTCTGGAGGA 5281 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||| || |||||| |||||| | | |||| ||| || Sbjct 5280 ATTCCTTCCTTATCTTGAATTTTGGCCTTAACATTTTCGATTGTGTCAGAGGGCTCAACT 5221 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || |||||||| ||||| ||||| ||||| |||||||| Sbjct 5220 TCCAGTGTGATAGTCTTGCCAGTCAGTGTCTTTACAAATATTTGCAT 5174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393617575852267