Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20elevatus_20bari_20[genbank_20GCA_5F900068365.1_202017- 04-25] 302,727 sequences; 364,783,738 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq50497 223 3e-53 seq22292 82.4 6e-11 seq22291 82.4 6e-11 >seq50497 Length=2916 Score = 223 bits (246), Expect = 3e-53 Identities = 736/1132 (65%), Gaps = 33/1132 (3%) Strand=Plus/Minus Query 35873 TTAGCAATCTGTCTGTAGTCGACCACGCCGTTTTCCCATGTACCCGTGATCGGTCCGACG 35932 || ||||||| |||||||| || || |||| || ||| || || ||| ||||| Sbjct 1652 TTCGCAATCTCCCTGTAGTCAACAACTCCGTCTTGCCAAGTTCCTTTGACAGGTCCAGTA 1593 Query 35933 GCTACGCCACTGAATGGATTGTCACTGTTGTAGTTGTGGACGCCCGTCCAACCGCGGCCG 35992 || ||| |||| ||| ||| | ||| | || ||||| ||||| || || || Sbjct 1592 GCGTTGCCTGTGAAGGGAATGTTGTCTTCGTAATCATGAACGCCAGTCCAGCCACGACCA 1533 Query 35993 TACATTGCTACGCCCAACACGAGtttttttGGATTCACTCGTTGCGCGAGCAAAGCGTCC 36052 ||||| || || || | || | || || |||||||||| ||||| ||||| | Sbjct 1532 TACATAGCAACACCTACTACAATCTTCTTAGGATTCACTCCCTGCGCCAGCAAGTATTTT 1473 Query 36053 ACGGCCACGTTGGCGGTGTACGGTTCGTTAGGTTTCCACGCGGAACCGTACAGTGCCGTC 36112 || | | || | ||||| | ||| || || |||||||| | |||||| || ||| Sbjct 1472 ACTCCGAAGTCAGATGTGTAAGTTTCCTTGGGATTCCACGCAGGCGCGTACAATGGCGTT 1413 Query 36113 TGATGACCGAGATCGGTATTAGACCAAGCTCCTTTGAAATCATAACTCATCACGAAAATT 36172 ||||| || ||| ||| ||||| ||||| ||||| || |||||||||| |||||| Sbjct 1412 TGATGTCCAAGAGTATCATTTGACCAGGCTCCCTTGAAGTCGTAACTCATCAAGAAAATA 1353 Query 36173 TTATCTAAATACTGTTGTGCTCGGTCGTAATTAACCGCGGCGATCTTGTCTATGCCAGCG 36232 | ||| | ||| | ||| || | | || | ||| | || || || ||||| Sbjct 1352 TGATCCATATAATTTTGAGCCTTGCCATAGTCAACAACTTGAATTTTATCCCATCCAGCA 1293 Query 36233 CTAATCGCTGTGGTGAGTTCTAAAGT---ACGATTCGTTTGTATTTGAACTTGATCGAGC 36289 ||||| || | || | ||| | | || |||| || | || || ||||||| Sbjct 1292 CTAATAGCAGAAGTTAATTCGTATTTCTTACCATTC--TTAGCTGAGAGCTC-ATCGAGC 1236 Query 36290 ATGGCGCGCAATTCGCCCAATAAAGCGATATACGTGTTATTGTCGCGTTCCACATCGCCA 36349 || | || | ||| || ||| | ||| | | || ||| || Sbjct 1235 ATCTCACGTAGTTCTTTCATCAAACTTACATAACAATCACCATC---TTCTGGGCTACCG 1179 Query 36350 ACGTTTGGATTGGCGCCTTTGCCGCCCGGAAATTCCCAATCAATATCGATGCCGTCGAAA 36409 | || || || || |||||||| || || || |||||||| ||||| | || ||||| Sbjct 1178 AGGTCAGGGTTAGCACCTTTGCCACCAGGGAACTCCCAATCGATATCAACACCATCGAAG 1119 Query 36410 AATTTCCATGTCAACACAAATTCACGCACGGATTCGACAAAAATTTGTCGCGTTCGCGCA 36469 ||||||||||| | | ||| || || || | ||||| ||| |||| | | Sbjct 1118 AATTTCCATGTTAGAAGAAACTCCTTTACTGACTGCACAAA------TCGTGTTCTCTTA 1065 Query 36470 ---TCGTGCATATGATAGAAG---GGATCGGACAGTGTCCAACCGCCGATTGATGCCAAC 36523 | || | | ||||| ||||||| || ||||| || || || || | || Sbjct 1064 GATTTGTCAACTAAAAAGAAGAAAGGATCGGCAAGCGTCCACCCTCCAATAGAGGG-AAG 1006 Query 36524 ACTTTTAGATT--GGGATTGGCCAATTTTGCTGCCATTAATTGACCAAAATTGCCTTTGT 36581 | | || ||| ||| || | |||| || ||||||||| ||||| |||||||| | Sbjct 1005 AATCTTCAATTCAGGGCGTG-CTTGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTAT 947 Query 36582 AGGGTTCGTTCCATGCGCTAACGCCTGTTTGTGGTTTTTGGAGCGCCGCCCACGGATCGT 36641 |||| |||||||||| | ||| ||||||||||||| | || ||||| ||||||| Sbjct 946 AGGGCTCGTTCCATGAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGT 887 Query 36642 GTATGGAAACTTTAAAATTGTCCCTGCCAGCGCACGATCTTTGCAACGCTTCAAAACTCC 36701 | || || ||||| || | || | ||| || || | || | |||| ||||| | Sbjct 886 GGATTGAGACTTTGAAGTCCTCACGGCCGCTACAGGACCGCTGTAGTGCTTGGAAACTGC 827 Query 36702 CCGTGATAGATTTTAAACTGTCGTTTATACCGTCACCGCCGCAAATCGGTATAAATCCGT 36761 | ||| ||||||||| || || || || |||||||||||||| || ||||| |||| Sbjct 826 CTTCGATCTCTTTTAAACTATCATTGATGCCATCACCGCCGCAAATTGGAATAAAGCCGT 767 Query 36762 ATAAAATGTGCGAAAGGTTCGGCGTGGGCACTTTGTCCACGGGAAAAGATCGACCGTAAA 36821 | | | ||| | ||| || || | || | |||||||| || | | || | Sbjct 766 AGAGCAAGTGAGTAAGATTAGGTATAGGTATACGATCCACGGGGAATTTCCTAGGATAGA 707 Query 36822 CGCCCCATTCGACAAAATAGGCCGCTACGGTGTGATCAG-TGTTGTACGTATACGGTTTA 36880 | |||||||| || || ||||| | || | ||| |||| | | | |||| ||| Sbjct 706 CACCCCATTCTACGAAGTAGGCACCCACAACTTTTCCAGATGTT-TGCTTGAACGGCTTA 648 Query 36881 TTGTTTTCTTGCCACGTGTATTGTAACGGTTTTAAATGTTTACCATCGGTGTCTGCGATC 36940 || |||||| | | || |||| | || |||||| | |||||||| || || | Sbjct 647 TTTTTTTCTCCCAATGTATATTCCAGAGGAGGTAAATGACTTCCATCGGTATCGGC---C 591 Query 36941 ACGACTTCTACGGTTTGACTAGCCGAA---CAGCCGTCGGCATTGCACAGTT 36989 ||||| | |||| || | ||| |||||||| ||||||| |||| Sbjct 590 ACGACAATTTCGGTGGGATCACTTGAACTGCAGCCGTCTTCATTGCAAAGTT 539 >seq22292 Length=1070 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| |||||||| ||||| | || || ||||| ||||| | || || || | | Sbjct 463 ATGCAAATATTTGTCAAAACACTTACTGGAAAAACAATAACTTTGGAAGTTGAGCCATCC 522 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | |||| |||||| | || ||| | || ||||| | || || || Sbjct 523 GACACCATTGAAAATGTTAAAGCTAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAA 582 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 |||||| | || | ||| || || |||||||||||| | || || |||||||| Sbjct 583 CAACGTCTTATCTTTGCTGGTAAGCAACTGGAAGATGGCCGCACCCTGTCCGATTACAAT 642 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || || |||||| |||| ||||| || || | || | || |||||| Sbjct 643 ATCCAAAAAGAGTCCACCCTTCACTTGGTTCTCCGTCTCCGAGGAGGT 690 >seq22291 Length=1216 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| |||||||||||| |||| || || || || ||| | || || ||| | Sbjct 744 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAGACCATTACCCTGGAAGTGGAACCCTCT 803 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | | |||| ||| || | |||||| | ||||| ||| | || ||| ||| Sbjct 804 GATACTATTGAAAATGTAAAAGCTAAAATTCAAGACAAAGAGGGCATCCCTCCTGATCAG 863 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || ||| | || | ||| || || ||| |||||||| || || || |||| | Sbjct 864 CAGCGTCTTATCTTTGCCGGTAAGCAATTGGAAGATGGACGCACCCTGTCTGACTACAAC 923 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || || || ||| | || |||||| |||| | || |||| || ||| Sbjct 924 ATCCAAAAGGAGTCTACCCTTCATCTAGTACTGCGTCTGCGAGGTGGT 971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 416760673535840