Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20elevatus_20bari_20[genbank_20GCA_5F900068365.1_202017- 04-25] 302,727 sequences; 364,783,738 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq7802 545 3e-150 seq18397 86.0 8e-12 seq6948 84.2 3e-11 >seq7802 Length=17912 Score = 545 bits (604), Expect = 3e-150 Identities = 1115/1631 (68%), Gaps = 59/1631 (4%) Strand=Plus/Plus Query 62026 TTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGAT 62085 |||||||| | ||||| | || || ||||| | | | ||| ||||| || |||| | Sbjct 1886 TTATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGT 1945 Query 62086 AGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGG 62145 |||||||||| ||||||| ||| | |||| ||| ||||| || ||| ||||| Sbjct 1946 AGTACATTCCTGTTTTTAAACCCATTTTCCAAGCGTGGAAATGAATCGACGTAAGTTTTC 2005 Query 62146 AATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCC 62205 ||| | || | || | ||| || || | |||||||||||| || || || ||||| | Sbjct 2006 CATAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATAAAAGCTCCTC 2065 Query 62206 TGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AACT 62264 | || || ||||| | |||| || || ||| ||| ||||| | ||||| || || | Sbjct 2066 TATCAGCTGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAAT 2125 Query 62265 CGCTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATGGATCCACCATCTACCATAATC 62321 | |||| | |||| |||| ||| | |||| | || |||||| | ||||| Sbjct 2126 CTCTTATT-TCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATA 2184 Query 62322 CTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGG 62381 || || || || |||| ||| || | | || ||| | | || ||||| || Sbjct 2185 AGGTTTTTCATATCTTCATCCCACAAATCAGCCCGAGTCAAATCAGTCAGAAGATGATGG 2244 Query 62382 TTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 62441 || ||||| | ||||||||||| || ||||| | ||||||||| ||| | ||| Sbjct 2245 TTCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAGGGT 2304 Query 62442 TCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 62501 || | || ||| | || || | |||||| ||||| || |||||||||||||| || | | Sbjct 2305 TCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGAGCTATC 2364 Query 62502 AATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGATGTTCCCAATTCC 62559 |||| | ||| | | ||| ||||| || || || ||||| || |||| | || Sbjct 2365 AATAGAGAATTGCGCAAACC--ATGTTTTGCTATCTTTTCTTTAAGGACAGCCCAGTCCC 2422 Query 62560 AAAGATCCGACGG-------TACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTG 62612 |||| || | || | | ||| ||| || || ||||| | || Sbjct 2423 AAAGGTCTGTAGGAGTTTTGTCCCACATATC-------ATACTGGAGGATACCTTGGCTT 2475 Query 62613 GC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGC 62671 || | || ||| |||||| |||| ||||| || ||||||| || |||||| || Sbjct 2476 GCTGGACTC-CCTTGATATGTGCTGTATGCACCTTCTTTTTCAGCTAATTCACAACTAGC 2534 Query 62672 CTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGG 62731 ||||||||||| |||||||| |||||||| || | | ||| ||| | ||||| | Sbjct 2535 TTCTAATGCACCATAATAAATAGTTTCAAATATTTGTTGATTGAGAAGTATTGCTTTCTC 2594 Query 62732 GCTATCAAATGGATAATTTAAGAGA-ATAAACGCGTCCGCTAATCCTTGAACACCAATAC 62790 || || | | ||| | | | | | |||||| || || | || ||||||||||||| Sbjct 2595 ACTTTCGTAAG-ATATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATAC 2653 Query 62791 CGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATAT 62850 | ||||||||||||||| |||| || ||| ||||| || | ||||||| |||||| || Sbjct 2654 CAATAGGTCTATGTCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAATTAACAT 2713 Query 62851 CTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 62907 | |||| ||| || | |||| | ||||| ||||| | || || | ||| || Sbjct 2714 CAATAACTTTGTTTAAATTTTGAGTTACAAT--CTTTGTG-ATTTCTTTTAATTTTTTAA 2770 Query 62908 AATCAAATCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGG 62967 ||| ||||| || | ||||||||||| | ||| | || || || || ||||| | Sbjct 2771 AATTAAATCTGTTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTG 2830 Query 62968 CTACCTCATTAGCATCCGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGA 63024 | || |||| | || | | ||||| | | ||||||||||||||| ||||| || | Sbjct 2831 CCACTTCAT---CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAA 2887 Query 63025 TAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATG 63084 |||| || | ||||| ||||||||||||| ||||||| ||||||||||| | ||| ||| Sbjct 2888 TAGTGCCAAGATTTTTTTGATTACTCTTTCTGTTACAAGCATCCTTATACAACATGTATG 2947 Query 63085 GAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTA 63144 | |||||||| || | || | ||||||||| | ||||| | || |||| | | | Sbjct 2948 GTGTACCAGTCTCCACTTGGGCTTCTATAATTGACTTCCATAACTCTTGAGCTCTGACTT 3007 Query 63145 TAGATTTGTATCTCCTTTCTCTT--TCGTATAGAGTATACAATCGTTCGAACTCGTCTCC 63202 | ||| || || ||| |||| || ||| ||||| | | ||| || || ||||| Sbjct 3008 --GTTTTATAAATCGTTTTTCTTCTTCATATTTGGTATATAGTTCTTCAAATTCCTCTCC 3065 Query 63203 CCAAACATTGTCCAAT-CTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCAT 63261 || || | | | | |||||| |||| |||||||| | ||| || |||| Sbjct 3066 A-AAGCAGTCAGCGAGGCCAGGACAGTCATGAGGACACATGAGACTCCAAACT---TCAT 3121 Query 63262 CCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTG 63318 |||| |||| ||||||||| ||||| || ||||| | ||| ||| || ||||| | Sbjct 3122 CCTTTTCTACTCTTTTCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAG 3181 Query 63319 TTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAAT 63378 ||| ||| || || ||||| ||||| || | ||| | ||| | | || || | || Sbjct 3182 CTCTCATTTCTTCCTTACCTGTGTTCTTCTTTAAATCCAAGAATTCAAATATGTCCGCAT 3241 Query 63379 GCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGT 63438 |||| || || || || || || | | || || ||||||||||| || ||||||| | Sbjct 3242 GCCAAGGCTCTAAATAAATTGCAAATGCGCCGGGACGTTTGTTTCCACCTTGATCTACAT 3301 Query 63439 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGG 63498 |||| || || || ||||| |||||||||||||| | | ||| ||||| | ||||| | Sbjct 3302 ATCTGGCAGTATTGTTATACACTCTCAACATTGGCACTAGACCATTTGAGACCCCATTAG 3361 Query 63499 TACCGGAGATATAGCCTCCACTG-GCACGAAT---ATTACTAATTGATAGACCTATTCCC 63554 | || | || || || ||| || | || || || || || |||||| || Sbjct 3362 TGCCAGCTATGTAAGAACC-CTGAGCTCTGATGCAATGTGTA--TG-TAAACCTATGCCA 3417 Query 63555 CCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTA 63614 || || |||||| |||||||| ||| ||||||| || ||| | || ||||| |||||| Sbjct 3418 CCAGCAGATTTAGAAATTAATGCACATTGTTTTAAAGTATCAAAAATACCTTCAATGCTA 3477 Query 63615 TCATCGATCAT 63625 || || |||| Sbjct 3478 TCGTCTTTCAT 3488 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 64017 TTTTTTGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCC 64076 || || || || || |||| ||| ||||| ||||||||||| || | |||||||||||| Sbjct 4759 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCG 4818 Query 64077 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 64136 ||||| | |||||| ||| ||||| ||||| || || ||| | || | || | ||| Sbjct 4819 GGATGATCTGTAGTCTTAGTAGCTGCAATTTCAGCAGCTAGATTATCAAGCTCAGCAGTT 4878 Query 64137 GTTACTCCATTATATATTCC 64156 ||||| ||| |||||| || Sbjct 4879 GTTACACCAGAATATATGCC 4898 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 63807 TTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 63866 || |||||||| |||||||| || ||| ||||||||||||| |||||||||||||||||| Sbjct 4017 TTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAGTTGTAT 4076 Query 63867 GAAAAGTCTCGTTCGTAAATAAT 63889 ||| |||| || |||| ||| Sbjct 4077 TTAAAATCTCTATCATAAACAAT 4099 >seq18397 Length=6272 Score = 86.0 bits (94), Expect = 8e-12 Identities = 81/103 (79%), Gaps = 3/103 (3%) Strand=Plus/Minus Query 34063 TATCTTTAGATATA---TCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 34119 ||| | ||| |||| || |||||||| | |||||||| ||||| || || ||||||| Sbjct 319 TATATATAGGTATAANNTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTAT 260 Query 34120 ACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 |||| | ||| || || |||||||||||||||| ||||| || Sbjct 259 ACATCTGCCATATATCTGGATATTGGATTGGGAATATAACGAA 217 >seq6948 Length=7233 Score = 84.2 bits (92), Expect = 3e-11 Identities = 244/372 (66%), Gaps = 13/372 (3%) Strand=Plus/Plus Query 155252 TTATGACTCCA--ATTAATCCCATGTTAGCGGAATCATGTGATTCTGTCAATAAGGCGTT 155309 ||||||||||| |||| || |||||||| ||| | || | || || | | ||| | Sbjct 2318 TTATGACTCCAGTATTA--CCGATGTTAGCTGAAGCTTGCAAGTCAGTTGAAATGGCTAT 2375 Query 155310 TAAAAAATTTCCATCAGGAATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTACAAGT 155369 ||||||| |||| || ||||| | || | ||||| ||||| ||| | || ||||| Sbjct 2376 GAAAAAATGTCCAAATGGCATGTTCTCTGAGATAAAATATGATGGAGAACGGGTTCAAGT 2435 Query 155370 TCATaaaaaaaaTAACGAGTTTGCATTCTTTAGTAGAAACATGAAACCAGTACTCTCTCA 155429 |||||||| || ||||| || ||| | | | ||||||||| | |||| Sbjct 2436 CCATAAAAAGGGAAATGAGTTCAAATATTTTTCCCGTGCCTTAAAACCAGTAATGGCTCA 2495 Query 155430 TAAAGTGGATTATCTCAAAGAATACATACCGAAAGCATT---TAAAAAAGCTACGTCTAT 155486 ||||| | || | ||||| || |||| |||||||| |||| || | | || Sbjct 2496 CAAAGTTAGTCATTTTAAAGATTATTTACCCAAAGCATTTCCTAAAGGAGATGATTTGAT 2555 Query 155487 CGTATTGGATTCTGAAATTGTTCTTGTAGACGAACATAATG---TACCGCTACCGTTTGG 155543 | |||||| ||||| | || | || || | ||| || ||| | || || || Sbjct 2556 C---TTGGATGCTGAAGTACTTATGGTTGATGTCAATACTGGAAAACCATTGCCTTTCGG 2612 Query 155544 AAGTTTAGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTT 155603 | |||||||| |||||| | ||||| |||| | || | | || || | | || Sbjct 2613 TACATTAGGTATTCACAAACAATCAGAATTTAAAGATGCTCAAGTTTGCTTATATATATT 2672 Query 155604 TGACTGTTTATA 155615 ||| || ||||| Sbjct 2673 TGATTGCTTATA 2684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627434315092560