Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20elevatus_20bari_20[genbank_20GCA_5F900068365.1_202017- 04-25] 302,727 sequences; 364,783,738 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq7802 527 6e-145 seq18397 136 4e-27 >seq7802 Length=17912 Score = 527 bits (584), Expect = 6e-145 Identities = 1186/1762 (67%), Gaps = 31/1762 (2%) Strand=Plus/Plus Query 36805 ATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTC 36864 |||| ||||| ||| | |||||| | | || |||||||| ||||||| |||| | || Sbjct 1915 ATAGCATTTGCTGCTGGTTTTGTGCGTAAGTAGTACATTCCTGTTTTTAAACCCATTTTC 1974 Query 36865 CATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTC 36924 || ||| ||||| || || |||||| | || |||| ||| | | || ||| | Sbjct 1975 CAAGCGTGGAAATGAATCGACGTAAGTTTTCCATAGTTAGGTTTAGCAACATGTATGTTA 2034 Query 36925 ATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTT 36984 | ||||||||||| |||||||| || ||||| || |||||||| | || | || || Sbjct 2035 AAAGATTGACTTTGGTCTATAAAAGCTCCTCTATCAGCTGCCATCTGTA---TGGATGTT 2091 Query 36985 T---GAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAATCTA-- 37039 | | || |||||||| || ||||| || | | | |||| || | | | || | | Sbjct 2092 TTCAGTGAAATCTCCCATACGGTTTTGTACAAATCTCTTAT-TTCTTTAGGAATTTTTTC 2150 Query 37040 AATGT--TGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCATTATTCCACAT 37097 ||| | || ||||| ||||| | | | ||| || || || || | || ||||| Sbjct 2151 AATTTCTTGTATAGATCCATTGTTGTATATAATAAGGTTTTTCATATCTTCATCCCACAA 2210 Query 37098 ATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAA 37157 || | | | || ||| || || | || || || |||| ||||||||||| Sbjct 2211 ATCAGCCCGAGTCAAATCAGTCAGAAGATGATGGTTCACTACAGGAAATTCTCCAGATAA 2270 Query 37158 TACTCTTCTT--GTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAAT 37215 ||||||||| ||| |||| ||| | ||| | ||||||| || ||| | || | | Sbjct 2271 GACTCTTCTTTGGTAAATAT-TTGAT-GTAAAGGGTTCAAAAGATTCAGTGTTGCCAAGA 2328 Query 37216 ATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGT 37275 ||||| | ||||| ||||| ||||| || ||||| | || ||| | ||| |||||| Sbjct 2329 ATTTGTGCAGTAGAGGCAGTCGGCATAGGAGCTATCAATAGAGAATTGCGCAAACCATGT 2388 Query 37276 GTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAACCAC 37335 | || | | ||| || || ||| ||||| | ||||| || | || |||| Sbjct 2389 TTTGCTATCTTTTCTTTAAGGACAGCCCAGTCCCAAAGGTCTGTAGGAGTTTTGTCCCAC 2448 Query 37336 ATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCG 37395 |||||||| || || ||||||| || |||||| | | |||||| || | || Sbjct 2449 ATATCATACTGGAGGATACCTTGGCTTGCTGGACTCCCTTGATATGTGCTGTATGCACCT 2508 Query 37396 TAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATT 37455 | ||| ||||| ||| ||||||| ||||| ||| ||||||| || ||||| || ||| Sbjct 2509 TCTTTTTCAGCTAATTCACAACTAGCTTCTAATGCACCATAATAAATAGTTTCAAATATT 2568 Query 37456 TGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAAT-AATATAAACAC 37514 ||| ||| | | | |||||| || || ||| | | ||| | || || | |||| | Sbjct 2569 TGTTGATTGAGAAGTATTGCTTTCTCACTTTCGTAAG-ATATTCTCATCAACACAAACGC 2627 Query 37515 ATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGA 37574 ||| |||| ||||||||||| ||||| || ||||||||| || |||| || | | Sbjct 2628 ATCTGCCATGCCCTGAACACCAATACCAATAGGTCTATGTCTCATATTTGAAGTTTTTGC 2687 Query 37575 TTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTAGTATTTT 37634 ||| || |||||| |||| | ||| || | ||| |||| ||||| | || || || Sbjct 2688 TTCAGGGACAGGATAAAAATTAACATCAATAACTTTGTTTAAATTTTGAGTTACAATCTT 2747 Query 37635 CGTAATTATTCTCAACTTGTCGAACATAAATACGTTATTATTAACAAATTTACTCAACGA 37694 || ||| | | || || | || ||||| |||||| | |||||| | | | | Sbjct 2748 TGTGATTTCTTTTAATTTTTTAAAATTAAATCTGTTATTTTCAACAAACATGTTAAGTGC 2807 Query 37695 AATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGT 37754 || || | || || || || || ||||||||||| | | |||| | || ||| || Sbjct 2808 TATGGAAGCAAGGTTGCACACTGCCACTTCATCTTCTGAAGTGTATTGCACAACCTCAGT 2867 Query 37755 ACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGA 37814 || ||||| || || |||| || || | ||| ||||||| ||| | ||||||| Sbjct 2868 GCAAAGATTGCTACATTTAATAGTGCCAAGATTTTTTTGATTACTCTTTCTGTTACAAGC 2927 Query 37815 ATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCA 37874 ||| ||||| | || || || || || || | ||| || || ||||| || ||||| Sbjct 2928 ATCCTTATACAACATGTATGGTGTACCAGTCTCCACTTGGGCTTCTATAATTGACTTCCA 2987 Query 37875 TAAACTTCTTG--CTTTAACGATCGCTTTA---Att-tttttCTTTGTTTCGTATTCTAT 37928 ||| ||||| || | || | | |||| || |||||||| ||| |||| | Sbjct 2988 TAAC--TCTTGAGCTCTGAC--TTGTTTTATAAATCGTTTTTCTTC--TTCATATTTGGT 3041 Query 37929 ATATAATTTGTTAAAATCATTCCCCCATACA-TCGCATAATCCTGGACATTCGCATGGAC 37987 ||||| || | ||| || | | || | || || | || ||||| || |||| Sbjct 3042 ATATAGTTCTTCAAATTCCT-CTCCAAAGCAGTCAGCGAGGCCAGGACAGTCATGAGGAC 3100 Query 37988 ACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATA 38047 |||| ||| ||| ||||||| |||||||| | || |||||| | ||| |||| ||||| Sbjct 3101 ACATGAGACTCCAAACTTCATCCTTTTCTACTCTTTTCATAAACAGATCTGGTATCCATA 3160 Query 38048 ATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTA 38107 | ||| ||| | ||| | | ||| |||||| || ||| ||||| |||| | Sbjct 3161 AAGCATAAAACAGTTCTCTAGCTCTCATTTCTTCCTTACCTGTGTTCTTCTTTAAATCCA 3220 Query 38108 GAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTT 38167 || || ||||| || || ||||| || |||| |||||| | | ||| || || | || Sbjct 3221 AGAATTCAAATATGTCCGCATGCCAAGGCTCTAAATAAATTGCAAATGCGCCGGGACGTT 3280 Query 38168 TATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTA 38227 | | || || |||| | |||||| | || || ||||| | ||| ||||| || |||| Sbjct 3281 TGTTTCCACCTTGATCTACATATCTGGCAGTATTGTTATACACTCTCAACATTGGCACTA 3340 Query 38228 TACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTA 38287 |||||| || || || | || | ||| |||| ||||| ||||| || | | Sbjct 3341 GACCATTTGAGACCCCATTAGTGCCAGCTATGTAAGAACCCTGAGCTCTGATGCAATGTG 3400 Query 38288 TCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAA 38347 | || ||||| ||||| ||| ||| || ||||| || ||||||||||| ||||||| Sbjct 3401 TATGTAAACCTATGCCACCAGCAGATTTAGAAATTAATGCACATTGTTTTAAAGTATCAA 3460 Query 38348 ATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCA 38407 | |||||||| || || || || || || | || | ||||| || | || ||| Sbjct 3461 AAATACCTTCAATGCTATCGTCTTTCATAGCTATAAGGAAACAGGAGGAAAGCTGTGGCC 3520 Query 38408 ATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAAT 38467 ||| || | ||| || |||||||| ||||||| | || |||| || |||| Sbjct 3521 GTGGTGTGGCTGCGGAGAACAATGTAGGGCTTGCATGTGTAAAATATTTCTCTGACATCA 3580 Query 38468 AATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCA 38527 |||||| || | ||| || ||| || || | || ||||| |||| || || |||| Sbjct 3581 TATTATAAGTATTGATTGCACTATCAATGTCTTCACCATGAATGCCTATGGAGACTCTCA 3640 Query 38528 TTAGCATATGTTGTGGTCTTTC 38549 | ||||| ||||| || ||||| Sbjct 3641 TAAGCATGTGTTGAGGCCTTTC 3662 >seq18397 Length=6272 Score = 136 bits (150), Expect = 4e-27 Identities = 170/229 (74%), Gaps = 8/229 (3%) Strand=Plus/Minus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 ||| |||| |||||| || ||||||||| ||||| |||||||||| |||||||||||| Sbjct 672 ATCCCTTATATATGTGTCAATTAATAAAGAGTACATCTCTGAATGAACATTTTCCATAGC 613 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACAC-TGTACATCCACATAAAATCTTT 12008 |||||||| |||||||| || | || || | ||| || || || | || | | Sbjct 612 AATTTGAAAACCATAGAAGCACCTGGCTTCAG-TCACTTGAACCTCTTGTGAGAAACGCT 554 Query 12009 CCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTA 12068 || | || |||||||| |||||||||||| || |||||| ||||||| | ||| || | Sbjct 553 CCACCAAGTTCTCATTAACAATACCATCAGAAGCTGCAAAGAATGCTAAGACATGCTTGA 494 Query 12069 TAAAGTATTTTTC---GTCTTTAGTTAATTTATCCCAATCATCTAAATC 12114 |||| | ||| || |||| ||||| | |||||||| |||| || Sbjct 493 TAAAATGTTTCTCACAATCTT---TTAATGTCTCCCAATCTGCTAAGTC 448 Score = 105 bits (116), Expect = 6e-18 Identities = 149/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 11666 ATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATA 11725 || |||||||| || || ||||||||||||| ||||||||||| | ||||||||| Sbjct 1565 ATAAGTTCATTGCTGAAAGTCAATCCGGGCATCAGACCTCGTTTTTTCAACCAAAATATT 1506 Query 11726 GCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCT 11785 | |||||| || || || ||||||||||| || |||||||| || | || | |||| Sbjct 1505 GAAGCAAAGCTGCCTGAGAAAAATATTCCCTCAACCGCTGCAAAAGCAATTATACGTTCT 1446 Query 11786 CCATAT---ACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACG 11842 ||| || || | ||||| ||||| | | ||||| || || || || || || Sbjct 1445 CCAAATGTAGCCGTCTTGCTGCCGATCCACTGTAACGCCCAGTCTGCCTTTTTCTTAACA 1386 Query 11843 CATTCCATTGTTTCTATAGCGTTAAATAA 11871 ||| | ||||| || || || ||||| Sbjct 1385 CATGGTAGAGTTTCAATTGCATTGAATAA 1357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466751861160880