Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20elevatus_20bari_20[genbank_20GCA_5F900068365.1_202017- 04-25] 302,727 sequences; 364,783,738 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq18397 140 3e-28 >seq18397 Length=6272 Score = 140 bits (154), Expect = 3e-28 Identities = 167/225 (74%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGttt 13739 ||||||| ||| ||||||||| || ||||| || ||||| ||||||| |||||||| Sbjct 1579 CCTCATCCCTAGAAATAAGTTCATTGCTGAAA--GTCAATCCGGGCATCAGACCTCGTTT 1522 Query 13740 ttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 13799 ||| ||||||||||||| ||| || || || || |||||||||||||| || ||||| Sbjct 1521 TTTCAACCAAAATATTGAAGCAAAGCTGCCTGAGAAAAATATTCCCTCAACCGCTGCAAA 1462 Query 13800 CGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTC 13859 || |||| ||||||||||| | || | ||| | ||||| | | ||||| || Sbjct 1461 AGCAATTATACGTTCTCCAAATGTAGCCGTCTTGCTGCCGATCCACTGTAACGCCCAGTC 1402 Query 13860 AGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAA 13904 | ||||| |||| | | | ||||| |||||||||||||| Sbjct 1401 TGCCTTTTTCTTAACACATGGTAGAGTTTCAATTGCATTGAATAA 1357 Score = 113 bits (124), Expect = 4e-20 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989 || ||||| ||||| | ||| ||||| || || || | ||||| ||||| || ||| Sbjct 665 ATATATGTGTCAATTAATAAAGAGTACATCTCTGAATGAACATTTTCCATAGCAATTTGA 606 Query 13990 AAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAG 14049 |||||||| || || || ||||| | | ||| ||||| | || | || ||||| Sbjct 605 AAACCATAGAAGCACCTGGCTTCAGTCACTTGAACCTCTTGTGAGAAACGCTCCACCAAG 546 Query 14050 TTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTAT 14109 || |||||||||||||||||| ||||||||| ||||| || | | || ||||| | | Sbjct 545 TTCTCATTAACAATACCATCAGAAGCTGCAAAGAATGCTAAGACATGCTTGATAAAATGT 486 Query 14110 TGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCT 14149 | ||| || || | | | | |||||| ||||| |||| Sbjct 485 TTCTCACAATCTTTTAATGTCTCCCAATCTGCTAAGTCCT 446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476777778104280