Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20elevatus_20bari_20[genbank_20GCA_5F900068365.1_202017- 04-25] 302,727 sequences; 364,783,738 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq84804 116 3e-21 seq19754 111 1e-19 seq22292 96.9 3e-15 seq22291 91.5 1e-13 seq20505 87.8 1e-12 >seq84804 Length=1020 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957 || || ||||| | ||| |||||| || | ||| || || |||||||| || | || Sbjct 302 AAGACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCTGACAATGTGCGCCCATCT 243 Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017 |||| ||| || || || ||||||| || |||||||| | || | |||||||| || Sbjct 242 TCCAGTTGCTTTCCAGCGAAAATCAGTCTTTGTTGATCAGGAGGAATGCCTTCTTTGTC- 184 Query 43018 CTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGT 43076 |||| || |||| || | | | |||||| ||| || || |||| || ||||| Sbjct 183 CTGAATCTTTGCTTTAACATTTTCGATTGTGTCAGAAGCTTCCACTTCTAAGGTAATAGT 124 Query 43077 TTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||| || ||||| |||||||||||||||||||| Sbjct 123 TTTGCCAGTTAGTGTTTTCACAAAAATTTGCAT 91 >seq19754 Length=5595 Score = 111 bits (122), Expect = 1e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 |||||| || | ||| || |||||||||||||| | || |||| ||| || || || || Sbjct 5593 CTCCTTCTGGATATTATAGTCGGACAATGTACGCCCATCTTCCAGTTGCTTTCCAGCGAA 5534 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTC 43036 ||||| || |||||||| | || | |||||||| || ||| ||| | || || Sbjct 5533 AATCAGTCTTTGTTGATCAGGAGGAATGCCTTCTTTGTC-CTGAATCTTTGCCTTAACAT 5475 Query 43037 TGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCA 43096 | | | |||||| ||| || || |||| || |||||||| || || || ||||||| Sbjct 5474 TTTCGATTGTGTCAGAAGCTTCCACTTCTAAGGTAATAGTTTTGCCAGTCAGTGTTTTCA 5415 Query 43097 CAAAAATTTGCAT 43109 ||||||||||||| Sbjct 5414 CAAAAATTTGCAT 5402 >seq22292 Length=1070 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || || | | ||||| || | ||| ||| ||||| | ||||||||||||| Sbjct 689 CCTCCTCGGAGACGGAGAACCAAGTGAAGGGTGGACTCTTTTTGGATATTGTAATCGGAC 630 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || |||| ||| || || ||||| || | || |||||||| | || Sbjct 629 AGGGTGCGGCCATCTTCCAGTTGCTTACCAGCAAAGATAAGACGTTGTTGATCTGGAGGA 570 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || ||| |||| || | ||| |||||| | ||| || Sbjct 569 ATTCCTTCCTTATCTTGAATCTTAGCTTTAACATTTTCAATGGTGTCGGATGGCTCAACT 510 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | ||||| |||||||| || || ||||| ||||| ||||||||| Sbjct 509 TCCAAAGTTATTGTTTTTCCAGTAAGTGTTTTGACAAATATTTGCATT 462 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||||||||| | ||||| || || || |||||| | || |||| || ||||||||||| Sbjct 198 CTCCTTTTGGATGTTGTAGTCCGATAAGGTACGTCCATCTTCCAGCTGCTTGCCGGCAAA 139 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 || | || |||||||| | || | ||| ||||| || ||| | || || | Sbjct 138 GATAAGACGTTGTTGATCTGGGGGAATACCCTCTTTATCTTGAATCTTAGCCTTTACATT 79 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| ||||| | ||| || || | |||||||| || || ||||| || || || Sbjct 78 TTCAATGGTGTCAGACGGCTCCACTTCCAGAGTTATAGTCTTGCCTGTTAGTGTCTTGAC 19 Query 43098 AAAAATTTGCAT 43109 ||| |||||||| Sbjct 18 AAATATTTGCAT 7 >seq22291 Length=1216 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | || ||||| || | ||| || ||||| | |||||| || || Sbjct 286 CCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAA 227 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| |||| |||||||| || || || |||||||| || |||||||| | || Sbjct 226 AGAGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGA 167 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || || |||| || | ||| || ||| || || || Sbjct 166 ATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACT 107 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || ||||| || || || ||||||||||| || |||||||| Sbjct 106 TCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTT 57 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||||||||| | ||||| || || || |||||| | || |||| || ||||||||||| Sbjct 1163 CTCCTTTTGGATGTTGTAGTCTGATAAGGTACGTCCATCTTCCAGCTGCTTGCCGGCAAA 1104 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 || | || |||||||| | || | ||| ||||| || ||| | || || | Sbjct 1103 GATAAGACGTTGTTGATCTGGGGGAATACCCTCTTTATCTTGAATCTTAGCCTTTACATT 1044 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| ||||| | ||| || || | |||||||| || || ||||| || || || Sbjct 1043 TTCAATGGTGTCAGACGGCTCCACTTCCAGAGTTATAGTCTTGCCTGTTAGTGTCTTGAC 984 Query 43098 AAAAATTTGCAT 43109 ||| |||||||| Sbjct 983 AAATATTTGCAT 972 >seq20505 Length=7550 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 42875 AATCGTCGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGT 42934 ||| || ||||| || |||| | ||| | ||| | ||| |||||||| | |||| Sbjct 4626 AATAGTTACCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGT 4567 Query 42935 AATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGAT 42994 | || |||||||||||| | || || | |||||| || ||||| ||||| || || || | Sbjct 4566 AGTCAGACAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGT 4507 Query 42995 CGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAG 43054 | | || | |||||| || || ||| |||| || | | | || || | Sbjct 4506 CTGGTGGAATACCTTCCTTATCTTGGATTTTAGCTTTTACATTTTCTATAGTATCAGAGG 4447 Query 43055 CCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 |||| || || | || || ||||| || || || || || || |||||||||||| Sbjct 4446 CCTCCACCTCAAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCATT 4391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379962542462166