Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20elevatus_20bari_20[genbank_20GCA_5F900068365.1_202017- 04-25] 302,727 sequences; 364,783,738 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq22291 147 2e-30 seq84804 120 2e-22 seq84803 114 9e-21 seq20505 114 9e-21 seq22292 107 1e-18 seq19754 107 1e-18 seq128380 87.8 1e-12 >seq22291 Length=1216 Score = 147 bits (162), Expect = 2e-30 Identities = 164/218 (75%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || ||||| || || |||||||| || ||||| || ||| | | ||||| Sbjct 271 AATACCAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAAAGAGTGCGTCCGTCT 212 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || ||||| || |||||| | |||||||||||||| || ||||| ||||| ||||| Sbjct 211 TCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCT 152 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||||||| |||||| |||| || |||||| | ||| || || || ||||||||| Sbjct 151 TGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTAATGGTT 92 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15369 ||||| || || ||||| ||||| || ||||| ||||| Sbjct 91 TTACCCGTAAGTGTTTTCACAAAGATCTGCAT-TTTGA 55 Score = 122 bits (134), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| || | | ||||| || | || || |||||||| |||||||| || | Sbjct 742 CCACCTCTTAAACGAAGTACTAAGTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGAT 683 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||||||||| ||||| || | || | ||||||||| || ||| Sbjct 682 AGTGTACGACCATCTTCTAATTGCTTGCCCGCAAAAATAAGACGTTGTTGATCCGGAGGA 623 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||||||||| ||||| ||| || ||| |||| || || || | ||| || Sbjct 622 ATGCCTTCTTTGTCTTGGATTTTAGCT-TTCACATTTTCAATTGTGTCAGAAGCTTCAAC 564 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| ||||| ||||| || || || ||||| ||||| ||||||||| Sbjct 563 TTCTAAAGTAATTGTTTTTCCAGTGAGTGTTTTAACAAAGATTTGCATA 515 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| || | | |||||||||||||| || || ||||| |||||||| || | Sbjct 1198 CCACCTCGCAGACGCAGTACTAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCTGAT 1139 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | ||||| | || ||||| || | || | ||||||||| || ||| Sbjct 1138 AAGGTACGTCCATCTTCCAGCTGCTTGCCGGCAAAGATAAGACGTTGTTGATCTGGGGGA 1079 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || ||||| || ||| || ||||||| |||| ||||| || || || Sbjct 1078 ATACCCTCTTTATCTTGAATCTTAGCCTTTACATTTTCAATGGTGTCAGACGGCTCCACT 1019 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | || || || || ||||| || || || ||||| ||||||||| Sbjct 1018 TCCAGAGTTATAGTCTTGCCTGTTAGTGTCTTGACAAATATTTGCATA 971 >seq84804 Length=1020 Score = 120 bits (132), Expect = 2e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | ||| | ||| | ||||| || || ||||| || || || || || | Sbjct 545 CCACCTCTAAGTCTGAGAACAAGGTGAAGAGTAGATTCTTTCTGGATATTATAGTC--TG 488 Query 15197 AGAATTCTCGCG--TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | ||| ||| ||||| | ||| || |||||| | |||| | |||||| || | Sbjct 487 ACAATGTACGCCCATCTTCCAGTTGCTTTCCAGCGAAAATCAGTCTTTGTTGATCTGGAG 428 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| ||||| ||||| |||||| ||| ||| ||||||| ||||| | ||| | Sbjct 427 GAATACCTTCCTTGTCTTGAATTTTAGCCTTAACATTTTCTATTGTATCAGAAGCTTCCA 368 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || ||||| || ||||| || ||||| || ||||||||||||||||| Sbjct 367 CTTCCAAGGTGATAGTTTTCCCAGTCAGTGTCTTTACAAAAATTTGCAT 319 Score = 109 bits (120), Expect = 4e-19 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | | || |||||||| | || || || || || || || || || | Sbjct 317 CCACCTCTTAGACGCAAGACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTC--TG 260 Query 15197 AGAATTCTCGCG--TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | ||| ||| ||||| | ||| || |||||| | |||| | |||||| || | Sbjct 259 ACAATGTGCGCCCATCTTCCAGTTGCTTTCCAGCGAAAATCAGTCTTTGTTGATCAGGAG 200 Query 15255 GAATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 |||| ||||||||||| ||| |||||| || ||| |||| || || || | ||| Sbjct 199 GAATGCCTTCTTTGTCCTGAATCTTTGCT-TTAACATTTTCGATTGTGTCAGAAGCTTCC 141 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || ||||||||||| ||||| || || || ||||| |||||||||||||| Sbjct 140 ACTTCTAAGGTAATAGTTTTGCCAGTTAGTGTTTTCACAAAAATTTGCAT 91 >seq84803 Length=1104 Score = 114 bits (126), Expect = 9e-21 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | ||| | ||| | |||||||| || ||||| || || || || || | Sbjct 590 CCACCTCTAAGTCTGAGAACAAGGTGAAGGGTAGATTCTTTCTGGATATTATAGTC--TG 533 Query 15197 AGAATTCTCGCG--TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | ||| ||| ||||| | ||| || || ||| | |||| | |||||| || | Sbjct 532 ACAATGTGCGCCCATCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAG 473 Query 15255 GAATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 |||| ||||| ||||| ||| ||||| ||| ||| |||| || ||||| | |||| Sbjct 472 GAATGCCTTCCTTGTCTTGAATCTTTGC-CTTAACATTTTCGATAGTATCAGAAGCTTCT 414 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| ||||| || |||| ||||| |||||||||||||| Sbjct 413 ACTTCCAAAGTAATAGTTTTGCCAGTCAATGTTTTCACAAAAATTTGCAT 364 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| | | |||||||| | || || || || || |||||||| || Sbjct 362 CCACCTCTCAGACGAAGTACTAAATGTAAAGTAGATTCCTTCTGAATGTTGTAGTCTGAC 303 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | |||||| |||||| | || | | |||||||| ||| Sbjct 302 AGTGTACGTCCATCTTCAAGTTGTTTTCCAGCGAAAATAAGCCTCTGTTGGTCTGGGGGA 243 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || || || || || |||||| ||| || ||| |||| || || || | || || Sbjct 242 ATCCCCTCCTTATCTTGAATTTTTGCT-TTAACATTTTCAATTGTGTCAGAAGGCTCAAC 184 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||||| |||||||| || || |||||||||||||||||||| Sbjct 183 TTCAAGAGTAATAGTTTTACCAGTAAGCGTTTTTACAAAAATTTGCAT 136 >seq20505 Length=7550 Score = 114 bits (126), Expect = 9e-21 Identities = 148/200 (74%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 15167 GTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTTCTAATTGTTTGC 15224 ||||| || ||||| |||||||| || | ||| || | ||||||| |||||| | Sbjct 4588 GTGGATTCCTTTTGAATGTTGTAGTCAG--ACAATGTACGTCCATCTTCTAGTTGTTTAC 4531 Query 15225 CAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT-GCTC 15283 |||| | ||||||||||| ||||| |||||| ||||| || || ||||| ||| Sbjct 4530 CAGCAAAGATCAAACGTTGCTGGTCTGGTGGAATACCTTCCTTATCTTGGATTTTAGCT- 4472 Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343 |||||| ||||||| ||||| || || || | ||||||||||||||| || || Sbjct 4471 TTTACATTTTCTATAGTATCAGAGGCCTCCACCTCAAGGGTAATGGTTTTACCCGTAAGG 4412 Query 15344 GTTTTTACAAAAATTTGCAT 15363 || || || ||||||||||| Sbjct 4411 GTCTTGACGAAAATTTGCAT 4392 >seq22292 Length=1070 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || ||||||||||| |||||||| || ||||||||| || | | | ||||| Sbjct 672 AACCAAGTGAAGGGTGGACTCTTTTTGGATATTGTAATCGGACAGGGTGCGGCCATCTTC 613 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| || ||||| | || | ||||||||| || ||||||||||| || || Sbjct 612 CAGTTGCTTACCAGCAAAGATAAGACGTTGTTGATCTGGAGGAATTCCTTCCTTATCTTG 553 Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 ||| || ||| || ||| |||| ||||| ||| || || || || || || |||| Sbjct 552 AATCTTAGCT-TTAACATTTTCAATGGTGTCGGATGGCTCAACTTCCAAAGTTATTGTTT 494 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || || || ||||| ||||| |||||||| Sbjct 493 TTCCAGTAAGTGTTTTGACAAATATTTGCAT 463 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| || | | |||||||||||||| || || ||||| |||||||| || | Sbjct 233 CCACCTCGCAGACGCAGTACTAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGAT 174 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | ||||| | || ||||| || | || | ||||||||| || ||| Sbjct 173 AAGGTACGTCCATCTTCCAGCTGCTTGCCGGCAAAGATAAGACGTTGTTGATCTGGGGGA 114 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || ||||| || ||| || ||||||| |||| ||||| || || || Sbjct 113 ATACCCTCTTTATCTTGAATCTTAGCCTTTACATTTTCAATGGTGTCAGACGGCTCCACT 54 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | || || || || ||||| || || || ||||| ||||||||| Sbjct 53 TCCAGAGTTATAGTCTTGCCTGTTAGTGTCTTGACAAATATTTGCATA 6 >seq19754 Length=5595 Score = 107 bits (118), Expect = 1e-18 Identities = 119/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| | ||| || |||||| | |||| | |||||| || ||||| ||||||||| Sbjct 5556 TCTTCCAGTTGCTTTCCAGCGAAAATCAGTCTTTGTTGATCAGGAGGAATGCCTTCTTTG 5497 Query 15269 TCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || ||| ||||| ||| ||| |||| || || || | ||| || ||||||||||| Sbjct 5496 TCCTGAATCTTTGC-CTTAACATTTTCGATTGTGTCAGAAGCTTCCACTTCTAAGGTAAT 5438 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || ||||| ||||| |||||||||||||| Sbjct 5437 AGTTTTGCCAGTCAGTGTTTTCACAAAAATTTGCAT 5402 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| | || |||| || | || || ||||| || ||||||||||| | Sbjct 4944 CCACCTCTCAGCCGTAGTACTAGGTGCAAAGTAGATTCTTTCTGAATGTTGTAATCAGAT 4885 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||||| || || ||||| | || | | ||| || || ||| Sbjct 4884 AGTGTGCGTCCATCTTCTAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGA 4825 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTA-CAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||| ||||| || |||||| | ||||| || |||| || ||||| | || || Sbjct 4824 ATTCCCTCTTTATCCTGAATTTT-CGCTTTAACATTTTCAATTGTATCAGAAGGCTCAAC 4766 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || || || ||||| || ||||| ||||||||||| Sbjct 4765 TTCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTTACGAAAATTTGCAT 4718 >seq128380 Length=670 Score = 87.8 bits (96), Expect = 1e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 15233 ATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAAT 15291 |||| | |||||| || ||||| ||||||||||| ||| |||||| || ||| | Sbjct 665 ATCAGTCTTTGTTGATCAGGAGGAATGCCTTCTTTGTCCTGAATCTTTGCT-TTAACATT 607 Query 15292 TTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTAC 15351 ||| || || || | ||| || ||||||||||| ||||| || ||||| ||||| || Sbjct 606 TTCGATTGTGTCAGAAGCTTCCACTTCTAAGGTAATAGTTTTGCCAGTCAGTGTTTTCAC 547 Query 15352 AAAAATTTGCAT 15363 ||||| |||||| Sbjct 546 AAAAACTTGCAT 535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360842945161107