Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20elevatus_20bari_20[genbank_20GCA_5F900068365.1_202017- 04-25] 302,727 sequences; 364,783,738 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq50497 170 2e-37 seq40423 136 3e-27 seq128380 114 1e-20 seq19754 105 6e-18 seq22291 104 2e-17 seq84804 91.5 1e-13 seq84803 82.4 6e-11 >seq50497 Length=2916 Score = 170 bits (188), Expect = 2e-37 Identities = 594/912 (65%), Gaps = 35/912 (4%) Strand=Plus/Minus Query 100328 TAATCGACAACGCCGTCTTCCCAAGTGCCGGTCACGGGCCCGGCAGCTGTGCCTGTGAA- 100386 || || ||||| ||||||| |||||| || | || || || | ||| |||||||||| Sbjct 1637 TAGTCAACAACTCCGTCTTGCCAAGTTCCTTTGACAGGTCCAGTAGCGTTGCCTGTGAAG 1578 Query 100387 --ATAGTTGTCACCGTCATAGCCCGCCACGCCTGTCCAACCGCGGCCGTACATGGCAACG 100444 | |||||| ||| || | ||||| ||||| || || || ||||| ||||| Sbjct 1577 GGAATGTTGTCTTCGTAAT---CATGAACGCCAGTCCAGCCACGACCATACATAGCAACA 1521 Query 100445 CCCACAATAATTTTGCGCGGGTCCACGCCCTGGTTCGTGAGCAA---TTTCACGGCGTGA 100501 || || | ||| || || | ||| ||||| || ||||| ||| || || Sbjct 1520 CCTACTACAATCTTCTTAGGATTCACTCCCTG---CGCCAGCAAGTATTTTACTCCGAAG 1464 Query 100502 TCCGTGTTGTACAGCTCGTTCGGGTTCCAACTCGGCGCGTAGAGAGTGGTTTGGTAGCCC 100561 || | |||| || || || ||||| |||||||| | | ||||| | | || Sbjct 1463 TCAGATGTGTAAGTTTCCTTGGGATTCCACGCAGGCGCGTACAATGGCGTTTGAT-GTCC 1405 Query 100562 AA----ATCGGTGTTTGACCAGGCGCCTTTAAAATCGTAGCTCAT-AAGAAATATTTTAT 100616 || ||| ||||||||||| || || || ||||| ||||| |||||| || | || Sbjct 1404 AAGAGTATCA---TTTGACCAGGCTCCCTTGAAGTCGTAACTCATCAAGAAA-ATATGAT 1349 Query 100617 CGAGAAGCTTTTGCGCAACGTCGTACTGTACCACAGCAATTTTGTCATAGCCGGAACTGA 100676 | | | ||||| || | | || | || || |||||| || | || | ||| | Sbjct 1348 CCATATAATTTTGAGCCTTGCCATAGTCAACAACTTGAATTTTATCCCATCCAGCACTAA 1289 Query 100677 TTGCGCTTGTCAACTCGTACGTTTTGCCCGTTTGCAGTTGT-AGCTGGTCCAGCATCGCG 100735 | || || || ||||| | || || | | || || |||| || |||||| | Sbjct 1288 TAGCAGAAGTTAATTCGTATTTCTTACCATTCTT-AGCTGAGAGCTCATCGAGCATCTCA 1230 Query 100736 CGCAATTCCTTCAGTAAAATGTTGTACGTGTCGGCGTCGCGCTCCCCGTTGCCAAGAGTC 100795 || | ||| |||| ||| | || || | || || | | || || ||| Sbjct 1229 CGTAGTTCTTTCATCAAACTTACATAACAATCACCATCT---TCTGGGCTACCGAG-GTC 1174 Query 100796 -GGGTTGGCGCCTTTGCCGCCCGGAAACTCCCAGTCAATGTCCACGCCGTCAAAAAACTT 100854 ||||| || |||||||| || || |||||||| || || || || || || || || || Sbjct 1173 AGGGTTAGCACCTTTGCCACCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTT 1114 Query 100855 CCACACCTGCAAAAATTCCTTGACCGAGTCCACAAACACGCGCCGTTTTTCCGCATCGTG 100914 ||| | | ||| ||||| || || | |||||| || | | | | | || Sbjct 1113 CCATGTTAGAAGAAACTCCTTTACTGACTGCACAAAT---CGTGTTCTCTTAGATTTGTC 1057 Query 100915 CATGAAATAGAAC---GGGTCGGACAACGTCCAGCCGCCGATGGACGGCAGAATTTTGAG 100971 | ||| |||| || |||| | |||||| || || || || || ||||| || | Sbjct 1056 AACTAAAAAGAAGAAAGGATCGGCAAGCGTCCACCCTCCAATAGAGGGAAGAATCTTCAA 997 Query 100972 GTGCGGATTGGCCAGCTTGGCCGCCATTAGCTGACCGAAATTGCCCTTGTACGGCTCGTT 101031 | || || | || | ||||| || || || ||||| || || |||||||| Sbjct 996 TTCAGGGCGTGCTTGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTATAGGGCTCGTT 937 Query 101032 CCATGCGGACACGCCCTTTTGCGGTTTTTGTATTGCGGCCCAGGGATCGTGAATGGCGAC 101091 ||||| |||| || ||||| |||||||||| ||| ||||| |||||||| || | ||| Sbjct 936 CCATGAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGAC 877 Query 101092 TTTGAAATCTGAACGACCCTTGCAGGAGCGCTGCAGCGCTTCAAAACTGCCGGGAATGGT 101151 |||||| || ||| || | ||||| ||||| || |||| |||||||| || Sbjct 876 TTTGAAGTCCTCACGGCCGCTACAGGACCGCTGTAGTGCTTGGAAACTGCCTTCGATCTC 817 Query 101152 TTTGAGGGCGTCGTTGAGGCCGTCGCCGCCGCAAATGGGTATGAACCCGTACAACAGATG 101211 ||| | || |||| ||| || ||||||||||| || || || ||||| | || || Sbjct 816 TTTTAAACTATCATTGATGCCATCACCGCCGCAAATTGGAATAAAGCCGTAGAGCAAGTG 757 Query 101212 CGAGAGATTGGG 101223 | ||||| || Sbjct 756 AGTAAGATTAGG 745 >seq40423 Length=5538 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24855 GCACACGATTCGGTCACGACCTTTTGTACATAATCGCGGCCCTTGACAAGTAGTACGTAT 24914 || |||| || || | ||||| || || || || ||||| ||||| || | ||||| Sbjct 1740 GCGCACGCCTCCGTGATCACCTTCTGGACGTACTCTCGGCCTTTGACCAGCTGCACGTAG 1681 Query 24915 GCGCAGCGCCCGAACCAAAGCGCGTGTTGTTGCCACGGCTCGTCATCTTGCTCCCAGTTG 24974 ||||| || ||||||| ||||||| || | ||||||| |||| || | |||||||| Sbjct 1680 GCGCACCGGTCGAACCAGCGCGCGTGCTGCTCCCACGGCACGTCGTCGTTCTCCCAGTCC 1621 Query 24975 TCCAAACCGCCGTCGCAGTAAAAACATTTGACTTTGTCGCTACGGCCGGTGTAAAAGAAG 25034 | | ||||| || ||||| || || || |||||| | |||||||||||||||| Sbjct 1620 TTGAGCCCGCCATCACAGTAGAAGCACTTAGTTTTGTCACCCTGGCCGGTGTAAAAGAAT 1561 Query 25035 CCAGCTTCTGCAAGTTTTTCGGGCCGTTGCTTCAAACCGCGTGGCCACTC 25084 || ||||| || |||| || ||| ||||||| || ||| ||||| || Sbjct 1560 CCCGCTTCGGCGAGTTCCTCAGGCTTCTGCTTCATACTGCGAGGCCAGTC 1511 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25230 CGCAAAAACGGGCATTGCGGCGCCCATTTTTGATGATCGCGAGCCGGGTCGTCGCCCGCC 25289 |||| || ||||| || |||||||| || || || || || || |||||||| Sbjct 1341 CGCAGGAAGGGGCACTGGGGCGCCCAGCGCTGGTGGTCCTTGGCGGGATCATCGCCCGCA 1282 Query 25290 TCCCAGCGCATAATCTCCACTTTGCAAAACGCGCAGCGCACTTCGTCGCCGCGTCCCAAG 25349 |||| |||||| || ||||| |||||||||||||| ||||| |||||||| |||| Sbjct 1281 ACCCATTTCATAATTTCTACTTTACAAAACGCGCAGCGTACTTCATCGCCGCGGCCCAGA 1222 Query 25350 TAGTAGAACCCATT 25363 || ||||| ||||| Sbjct 1221 TAATAGAAGCCATT 1208 >seq128380 Length=670 Score = 114 bits (126), Expect = 1e-20 Identities = 166/234 (71%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| |||| || || || |||| ||||| ||||| ||||| |||||||||||||| | Sbjct 307 TTCCACCTCTCAGCCGTAGTACCAGATGCAAAGTAGATTCCTTCTGAATATTGTAATCAG 248 Query 18873 CCATTGTTTTGGCGTCC----TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCC 18928 | ||| |||||| || ||||| || || ||| |||||||||| |||||||| Sbjct 247 ATAGTGT----GCGTCCATCTTCTAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCT 192 Query 18929 ACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGC 18988 ||| | |||||||| || ||||||| ||| || | | | ||||| |||| Sbjct 191 GGGGGAATTCCCTCTTTATCCTGAATTTTCGCTTTAACATTTTCAATTGTATCAGAAGGC 132 Query 18989 TCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || ||| | || || || || || || || || || || |||||||||||| Sbjct 131 TCAACTTCTAAAGTGATAGTCTTGCCAGTCAATGTCTTTACGAAAATTTGCATT 78 >seq19754 Length=5595 Score = 105 bits (116), Expect = 6e-18 Identities = 164/234 (70%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| |||| || || || |||| ||||| ||||| ||||| ||||||||||| || | Sbjct 5174 TTCCACCTCTCAGCCGTAGTACCAGATGCAAAGTAGATTCCTTCTGAATATTGTAGTCAG 5115 Query 18873 CCATTGTTTTGGCGTCC----TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCC 18928 | || |||||| || ||||| || || ||| |||||||||| |||||||| Sbjct 5114 ATAGCGT----GCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCT 5059 Query 18929 ACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGC 18988 ||| | ||||||||| || ||||||| || || | | | ||||| || Sbjct 5058 GGGGGAATGCCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATCGTATCAGAAGCT 4999 Query 18989 TCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| ||| | || || ||||| || || | ||||| ||||| ||||||||| Sbjct 4998 TCCACTTCCAGTGTGATAGTTTTGCCAGTCAGTGTTTTTACAAATATTTGCATT 4945 Score = 100 bits (110), Expect = 2e-16 Identities = 163/234 (70%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| |||| || || || || | |||||| ||||| || || ||||| |||||||| | Sbjct 4946 TTCCACCTCTCAGCCGTAGTACTAGGTGCAAAGTAGATTCTTTCTGAATGTTGTAATCAG 4887 Query 18873 CCATTGTTTTGGCGTCC----TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCC 18928 | ||| |||||| || ||||| || || ||| |||||||||| |||||||| Sbjct 4886 ATAGTGT----GCGTCCATCTTCTAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCT 4831 Query 18929 ACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGC 18988 ||| | |||||||| || ||||||| ||| || | | | ||||| |||| Sbjct 4830 GGGGGAATTCCCTCTTTATCCTGAATTTTCGCTTTAACATTTTCAATTGTATCAGAAGGC 4771 Query 18989 TCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || ||| | || || || || || || | || || || |||||||||||| Sbjct 4770 TCAACTTCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTTACGAAAATTTGCATT 4717 Score = 93.3 bits (102), Expect = 3e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 ||||| | |||||| ||||||||||| || ||||| || || | || ||| | || Sbjct 4701 AACACTAAGTGCAAAGTAGACTCCTTCTGGATATTATAGTCAGACAATGTGCGCCCATCT 4642 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || || || || || || |||| ||||| || ||||| || | ||| || ||||| Sbjct 4641 TCGAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGAATGCCTTCCTTGTCT 4582 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 ||| || ||||| | ||| ||||| || ||| ||| | || |||||| Sbjct 4581 TGAATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGCTTCCACTTCCAATGTGATGGTT 4522 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCATTTTAAATCT 19050 || || ||||||||||| || || |||||||| | ||||| Sbjct 4521 TTCCCAGTTAAAGTTTTTACGAAGATTTGCATGATGAATCT 4481 >seq22291 Length=1216 Score = 104 bits (114), Expect = 2e-17 Identities = 144/201 (72%), Gaps = 8/201 (4%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC----TCCAGCTGTTT 18900 |||||||||||||| || ||||| || | || || |||||| |||| || || Sbjct 940 GTAGACTCCTTTTGGATGTTGTAGTCAGACAGGGT----GCGTCCATCTTCCAATTGCTT 885 Query 18901 ACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTG 18960 ||| ||| | ||||| | ||||||||| || | |||||||||||| |||||| Sbjct 884 ACCGGCAAAGATAAGACGCTGCTGATCAGGAGGGATGCCCTCTTTGTCTTGAATTTTAGC 825 Query 18961 TTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAA 19020 |||||| | | | |||||| || ||| ||| | ||||||||| || || |||| Sbjct 824 TTTTACATTTTCAATAGTATCAGAGGGTTCCACTTCCAGGGTAATGGTCTTTCCAGTTAG 765 Query 19021 AGTTTTGACAAAAATTTGCAT 19041 ||||| |||||||| ||||| Sbjct 764 GGTTTTAACAAAAATCTGCAT 744 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || |||| ||| | ||||| || |||||||||||||| || | | || |||| Sbjct 271 AATACCAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAAAGAGTGCGTCCGTCT 212 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 |||| || || || || |||| | | || ||||| || | ||| || ||||| Sbjct 211 TCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCT 152 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 |||||| |||||| | | | ||||||| ||| || ||| | ||||||||| Sbjct 151 TGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTAATGGTT 92 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 ||||| || | ||||| ||||| || |||||||| Sbjct 91 TTACCCGTAAGTGTTTTCACAAAGATCTGCATTTT 57 >seq84804 Length=1020 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 ||||| ||||||||||| || ||||| || || | || ||| | || ||||| || Sbjct 293 TGCAAAGTAGACTCCTTCTGGATATTATAGTCTGACAATGTGCGCCCATCTTCCAGTTGC 234 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || || || |||| ||||| || ||||| || | ||| |||||||| ||| || Sbjct 233 TTTCCAGCGAAAATCAGTCTTTGTTGATCAGGAGGAATGCCTTCTTTGTCCTGAATCTTT 174 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018 ||| || | ||| || || || ||| ||| | |||||| ||||| || ||| Sbjct 173 GCTTTAACATTTTCGATTGTGTCAGAAGCTTCCACTTCTAAGGTAATAGTTTTGCCAGTT 114 Query 19019 AAAGTTTTGACAAAAATTTGCAT 19041 | ||||| |||||||||||||| Sbjct 113 AGTGTTTTCACAAAAATTTGCAT 91 >seq84803 Length=1104 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 || || ||||| ||||| ||||| ||||| || | || ||| | || || || ||| Sbjct 338 TGTAAAGTAGATTCCTTCTGAATGTTGTAGTCTGACAGTGTACGTCCATCTTCAAGTTGT 279 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || || || ||||||| ||||| || || ||| | ||||| || || |||||| Sbjct 278 TTTCCAGCGAAAATAAGCCTCTGTTGGTCTGGGGGAATCCCCTCCTTATCTTGAATTTTT 219 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018 ||| || | | | || || |||||| ||| | ||||| |||||||| || Sbjct 218 GCTTTAACATTTTCAATTGTGTCAGAAGGCTCAACTTCAAGAGTAATAGTTTTACCAGTA 159 Query 19019 AAAGTTTTGACAAAAATTTGCAT 19041 | ||||| |||||||||||||| Sbjct 158 AGCGTTTTTACAAAAATTTGCAT 136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413043239743438