Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20elevatus_20bari_20[genbank_20GCA_5F900068365.1_202017- 04-25] 302,727 sequences; 364,783,738 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq50497 212 5e-50 seq22292 104 2e-17 seq22291 104 2e-17 seq225328 95.1 1e-14 seq84803 89.7 4e-13 seq84804 84.2 2e-11 >seq50497 Length=2916 Score = 212 bits (234), Expect = 5e-50 Identities = 635/970 (65%), Gaps = 29/970 (3%) Strand=Plus/Minus Query 101018 TAATCGACAACGCCGTCTTCCCAAGTACCGGTCACGGGCCCGGCAGCTGTGCCTGTGAA- 101076 || || ||||| ||||||| |||||| || | || || || | ||| |||||||||| Sbjct 1637 TAGTCAACAACTCCGTCTTGCCAAGTTCCTTTGACAGGTCCAGTAGCGTTGCCTGTGAAG 1578 Query 101077 --ATAGTTGTCACCGTCATAGCCTGCCACGCCTGTCCAACCGCGGCCGTACATGGCAACG 101134 | |||||| ||| || | || ||||| ||||| || || || ||||| ||||| Sbjct 1577 GGAATGTTGTCTTCGTAAT--CATGA-ACGCCAGTCCAGCCACGACCATACATAGCAACA 1521 Query 101135 CCCACAATAATTTTGCGCGGGTCTACGCCCTGGTTCGTGAGCGA---TTTAACAGCGTAA 101191 || || | ||| || || | || ||||| || ||| | ||| || || | Sbjct 1520 CCTACTACAATCTTCTTAGGATTCACTCCCTG---CGCCAGCAAGTATTTTACTCCGAAG 1464 Query 101192 TCCGTGTTGTACAGCTCGTTTGGGTTCCAACTCGGCGCGTAGAGTGTAGTTTGATAGCCC 101251 || | |||| || || || ||||| |||||||| | || ||||||| || Sbjct 1463 TCAGATGTGTAAGTTTCCTTGGGATTCCACGCAGGCGCGTACAATGGCGTTTGATGTCCA 1404 Query 101252 AGATCGATGTTTGACCACGCGCCTTTGAAATCGTAGCTCATGAGAAATATTTTATCGAGG 101311 ||| |||||||| || || ||||| ||||| ||||| | || || | ||| | Sbjct 1403 AGAGTATCATTTGACCAGGCTCCCTTGAAGTCGTAACTCATCAAGAAAATATGATCCATA 1344 Query 101312 AACTTTTGCGCAAGATCGTATTTTACTACAGCAATTTTGTCGTGACCCGAACTAATTGCA 101371 | ||||| || | || | || || |||||| || || | |||||| ||| Sbjct 1343 TAATTTTGAGCCTTGCCATAGTCAACAACTTGAATTTTATCCCATCCAGCACTAATAGCA 1284 Query 101372 CTTGTTAATTCGTATGTTTTGCCCGTTTGCAGTTGCAA-CTCGTCCAGCATTGCGCGCAA 101430 |||||||||||| | || || | | || || | ||| || ||||| | || | Sbjct 1283 GAAGTTAATTCGTATTTCTTACCATTCTT-AGCTGAGAGCTCATCGAGCATCTCACGTAG 1225 Query 101431 TTCTTTCAGTAAAATGTTGTACGTGTCAGCGTCGCGTTCTTTGTTGCCGAGTGTTGGGTT 101490 |||||||| ||| | || ||| | || |||| | | ||||| ||||| Sbjct 1224 TTCTTTCATCAAACTTACATAACAATCACCATC---TTCTGGGCTACCGAGGTCAGGGTT 1168 Query 101491 GGCGCCTTTACCACCCGGAAACTCCCAATCGATGTCTACCCCGTCAAAAAATTTCCAAAC 101550 || ||||| ||||| || |||||||||||||| || || || || || |||||||| Sbjct 1167 AGCACCTTTGCCACCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTCCATGT 1108 Query 101551 CTGCAAAAATTCTTTGACAGAATCCACAAACACACGCCGTTTTATC---GCGTCGTGCA- 101606 | | ||| || || || || | |||||| ||| || || | | || | Sbjct 1107 TAGAAGAAACTCCTTTACTGACTGCACAAAT------CGTGTTCTCTTAGATTTGTCAAC 1054 Query 101607 TATAAT--AGAACGGGTCGGACAATGTCCAGCCGCCGATGGACGGCAAAATTTTAAGGTG 101664 || || |||| || |||| | ||||| || || || || || | ||| || | | Sbjct 1053 TAAAAAGAAGAAAGGATCGGCAAGCGTCCACCCTCCAATAGAGGGAAGAATCTTCAATTC 994 Query 101665 TGGATTGGCCAATTTGGCCGCCATTAGCTGACCAAAGTTGCCTTTGTAGGGCTCGTTCCA 101724 || || ||| | ||||| || |||||||||||||| |||||||||||||| Sbjct 993 AGGGCGTGCTTGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTATAGGGCTCGTTCCA 934 Query 101725 AGCAGATACACCTTTCTGCGGTTTTTGTATTGCGGCCCAAGGATCGTGGATAGCAACTTT 101784 | ||| | ||||| || |||||||||| ||| ||||| ||||||||||| | ||||| Sbjct 933 TGAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTT 874 Query 101785 AAAATCTGAACGGCCCTGGCAAGAACGTTGCAACGCTTCAAAACTACCGGGTATGGTTTT 101844 || || |||||| || || || || | |||| ||||| || || ||| Sbjct 873 GAAGTCCTCACGGCCGCTACAGGACCGCTGTAGTGCTTGGAAACTGCCTTCGATCTCTTT 814 Query 101845 GAGGGCGTCGTTAAGGCCATCGCCGCCACAAATGGGTATGAACCCGTACAACAAATGTGA 101904 | || || | |||||| ||||| ||||| || || || ||||| | ||| || | Sbjct 813 TAAACTATCATTGATGCCATCACCGCCGCAAATTGGAATAAAGCCGTAGAGCAAGTGAGT 754 Query 101905 GAGGTTGGGCAGCGGCACTTTGTCCACCGGAAAGTTGCGACCATACACGCCCCATTCTAC 101964 || || || | || | ||||| || || || | | ||| || ||||||||||| Sbjct 753 AAGATTAGGTATAGGTATACGATCCACGGGGAATTTCCTAGGATAGACACCCCATTCTAC 694 Query 101965 AAAATACGCA 101974 || || ||| Sbjct 693 GAAGTAGGCA 684 >seq22292 Length=1070 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 ||| || || || || || |||||||| || |||||||| || ||| | |||||| Sbjct 444 CACTAAGTGCAGGGTTGACTCTTTTTGAATATTGTAATCAGACAAAGTGCGACCATCTTC 385 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 |||||| || || ||| |||| || | |||||| || ||| | |||||| || || Sbjct 384 CAATTGCTTTCCAGCAAAAATGAGACGCTGTTGGTCTGGGGGGATGCCTTCCTTATCCTG 325 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 ||||| |||||| | | | | || ||||| ||||| ||||||||| || Sbjct 324 TATTTTAGCTTTCACATTCTCGATTGTGTCAGATGGTTCTACTTCCAGGGTAATGGTCTT 265 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || ||||| ||||||||||| |||||||| Sbjct 264 TCCAGTCAATGTTTTGACAAATATTTGCAT 235 >seq22291 Length=1216 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| || || | | ||| ||||| || || |||||||||||||| || ||||| || Sbjct 288 TTCCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAG 229 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | ||| ||||||||||| || || || |||| | | |||||||| | Sbjct 228 AAAGAGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAG 169 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | |||||| ||||| |||||| ||| || | ||| || |||| |||||| Sbjct 168 GAATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAA 109 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211 ||||| ||||||||||| || || | ||||| ||||| || |||||||| Sbjct 108 CTTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTT 57 Score = 102 bits (112), Expect = 7e-17 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 20012 GTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGA--ATCTTCCAATTGTTTGC 20069 |||||||||||||| |||||||| || ||||| | || |||||| ||||| |||| Sbjct 712 GTAGATTCTTTTTGGATGTTGTAGTCAG--ATAGTGTACGACCATCTTCTAATTGCTTGC 655 Query 20070 CCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTT 20129 ||||| ||||||| | |||||||| || | |||||||||||| ||||| || Sbjct 654 CCGCAAAAATAAGACGTTGTTGATCCGGAGGAATGCCTTCTTTGTCTTGGATTTTAGCTT 595 Query 20130 TCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTCAACG 20189 |||| | ||| | || || ||| ||| | ||||| ||||| || || | | Sbjct 594 TCACATTTTCAATTGTGTCAGAAGCTTCAACTTCTAAAGTAATTGTTTTTCCAGTGAGTG 535 Query 20190 TTTTGACAAAAATTTGCAT 20208 |||| ||||| |||||||| Sbjct 534 TTTTAACAAAGATTTGCAT 516 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || ||||| | | || || | ||| || ||||| || ||||| |||||||| || | Sbjct 970 CCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 911 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | || |||||||||||| || || ||| | ||||| | ||| ||||| || Sbjct 910 AGGGTGCGTCCATCTTCCAATTGCTTACCGGCAAAGATAAGACGCTGCTGATCAGGAGGG 851 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||| |||||||| |||||| ||| || | ||| || ||| |||||| | Sbjct 850 ATGCCCTCTTTGTCTTGAATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACT 791 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||||||||| || || || | ||||| |||||||| ||||| Sbjct 790 TCCAGGGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 744 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || || | || ||| || |||||||| |||||||| ||||| || || ||||| Sbjct 514 CCGCCACGAAGCCGCAATACTAAATGTAGGGTAGATTCCTTTTGAATATTATAATCAG-- 457 Query 20042 ATAGTTTTAGA--ATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 ||| | | | |||||||| |||||| || ||| |||| |||||||||||||| || Sbjct 456 ATAATGTACGGCCATCTTCCAGTTGTTTTCCAGCAAAAATCAGCCTCTGTTGATCTGGGG 397 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | || |||||||| || ||| ||||| | ||| || ||| ||||| Sbjct 396 GAATACCCTCTTTGTCTTGGATCTTTGCCTTCACATTTTCAATAGTGTCGGAGGGTTCTA 337 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || | || |||||||| || || | || || ||||| || |||||| Sbjct 336 CCTCTAAAGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCATT 287 >seq225328 Length=614 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 |||||||| | | | ||||| || || || || ||||| || || |||||||| | Sbjct 233 CCTCCTCGGAGACGGAGTACCAAGTGCAGGGTTGACTCTTTCTGAATATTGTAATCAGAC 174 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | |||||||||||| || || ||| |||| || | |||||| || ||| Sbjct 173 AAAGTGCGACCATCTTCCAATTGCTTTCCAGCAAAAATGAGACGCTGTTGGTCTGGGGGG 114 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||| || || || ||||| ||| || | | | | ||| ||||| | Sbjct 113 ATGCCCTCCTTATCCTGTATTTTAGCTTTGACATTCTCGATTGTATCAGATGGTTCTACT 54 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| |||||| || || || ||||| ||||||||||| |||||||| Sbjct 53 TCCAGGGTAATAGTCTTTCCAGTCAATGTTTTGACAAATATTTGCAT 7 >seq84803 Length=1104 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 || ||||||| |||||||| || || |||||||| || || || |||||| Sbjct 344 ACTAAATGTAAAGTAGATTCCTTCTGAATGTTGTAGTCTGACAGTGTACGTCCATCTTCA 285 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | |||||| || || |||||||||||||||| || ||| | || || || || | Sbjct 284 AGTTGTTTTCCAGCGAAAATAAGCCTCTGTTGGTCTGGGGGAATCCCCTCCTTATCTTGA 225 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 |||||| ||| || | ||| | || ||| || ||| | ||||| ||||| Sbjct 224 ATTTTTGCTTTAACATTTTCAATTGTGTCAGAAGGCTCAACTTCAAGAGTAATAGTTTTA 165 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || | |||||| |||||||||||||| Sbjct 164 CCAGTAAGCGTTTTTACAAAAATTTGCAT 136 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || ||||||||||| || || || || || || || |||||||| ||| Sbjct 566 TGAAGGGTAGATTCTTTCTGGATATTATAGTCTGACAATGTGCGCCCATCTTCCAGTTGC 507 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || || |||| || || |||||||| || | |||||| ||||| ||| ||| Sbjct 506 TTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTTT 447 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 || || | | | || ||| || ||| ||||| ||||| |||||||| ||| Sbjct 446 GCCTTAACATTTTCGATAGTATCAGAAGCTTCTACTTCCAAAGTAATAGTTTTGCCAGTC 387 Query 20186 AACGTTTTGACAAAAATTTGCAT 20208 || ||||| |||||||||||||| Sbjct 386 AATGTTTTCACAAAAATTTGCAT 364 >seq84804 Length=1020 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| |||| || | ||| || ||||| | ||||| || || || || || || || Sbjct 319 TTCCACCTCTTAGACGCAAGACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCTG 260 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 || || |||||||| ||| || || || |||| || || |||||||| | Sbjct 259 ACAATGTGCGCCCATCTTCCAGTTGCTTTCCAGCGAAAATCAGTCTTTGTTGATCAGGAG 200 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | |||||||||||| ||| ||| ||| || | | | | || || |||| Sbjct 199 GAATGCCTTCTTTGTCCTGAATCTTTGCTTTAACATTTTCGATTGTGTCAGAAGCTTCCA 140 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| | |||||| |||||||| || | ||||| |||||||||||||| Sbjct 139 CTTCTAAGGTAATAGTTTTGCCAGTTAGTGTTTTCACAAAAATTTGCAT 91 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418039139188287