Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20elevatus_20bari_20[genbank_20GCA_5F900068365.1_202017- 04-25] 302,727 sequences; 364,783,738 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq50497 192 5e-44 seq20505 86.0 5e-12 >seq50497 Length=2916 Score = 192 bits (212), Expect = 5e-44 Identities = 633/965 (66%), Gaps = 23/965 (2%) Strand=Plus/Plus Query 30232 TACTTTGTAGAGTGGGGTGTTTACGACAGACAATATCCAGCAGA-CTTAGTTCCCGTCCC 30290 ||||| ||||| |||||||| || || ||| || | || | || | || | || Sbjct 688 TACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTGGATCGTA-TACCTATACC 746 Query 30291 CAACCTTACGCATCTTTTGTATGGCTTTGTGCCTCTCTGCGGTGGAGATGGTATAAACGA 30350 || ||||| || | | || |||||| | || | ||||| || ||||| || || || Sbjct 747 TAATCTTACTCACTTGCTCTACGGCTTTATTCCAATTTGCGGCGGTGATGGCATCAATGA 806 Query 30351 TAGCTTAAAGCAAGTGCCGGGTTCGTTTGAGGCTTTACAAAAATCTTGCGCGGGTCGAGA 30410 ||| ||||| | | || || | || |||| || || || || || Sbjct 807 TAGTTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTACAGCGGTCCTGTAGCGGCCGTGA 866 Query 30411 GGATTTTAAAGTGACGATTCACGATATTTGGGGCGCTCTTCAAAAACCACAAAAAGGAGT 30470 ||| || ||||| | || |||||| |||| || | |||||||||||||||||| | Sbjct 867 GGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGGATT 926 Query 30471 GGGCGCTTGGGACGATCCGTATAAAGGAAATTTTGGCCAACTGATGGCGATTAAAAGACA 30530 | | ||| |||| || |||||||| || ||||||||| | ||| | | ||||| | Sbjct 927 GTCTTCATGGAACGAGCCCTATAAAGGCAACTTTGGCCAATTAATGTC-ACTAAAACAAG 985 Query 30531 CAATCCC-GACCTTACGATTTTACCGTCTATTGGCGGGTGGACACTTAGCGACCCTTTCT 30589 || ||| || | | |||| | || |||||||| |||||||| ||| ||| |||||| Sbjct 986 CACGCCCTGAATTGAAGATTCTTCCCTCTATTGGAGGGTGGACGCTTGCCGATCCTTTC- 1044 Query 30590 TTAAATTGAGTTCTGCCGAA---AATCGCGC-CGTTTTCGTTGAGTCCGCACGAGAGTAT 30645 || || ||| || | || || | | || ||| || |||| | | |||| | Sbjct 1045 TTCTTTTTAGT--TGACAAATCTAAGAGAACACGATTT-GTGCAGTCAGTAAAGGAGTTT 1101 Query 30646 TTGCGCACATGGAAATTTTTTGACGGACTAGACATCGACTGGGAGTTTCCGGGCGGTAAA 30705 | | ||||||||||| || || || | || ||||| |||||||| || || || ||| Sbjct 1102 CTTCTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGGCAAA 1161 Query 30706 GGTGCTAATCCCGAATTAGGAGATCCAGAAAAGGATGGAGTAACATATGTGCAGTTATTG 30765 |||||||| || || | || |||||| ||||| | ||||| || || Sbjct 1162 GGTGCTAACCCTGACCTCGGTAGCCCAGAA---GATGGTGATTGTTATGTAAGTTTGATG 1218 Query 30766 AAAGAGCTCAGAGAAATGCTAAACGATCTTTC--TAAAGAAACAGGGAAAAAATACCAGC 30823 ||||| || | || ||||| | || || || ||||| || || |||||| | Sbjct 1219 AAAGAACTACGTGAGATGCTCGATGAGCTCTCAGCTAAGAA--TGGTAAGAAATACGAAT 1276 Query 30824 TCACCTCGGCGATTAGCGCGGGGTACGATAAAATCTCTA-TAGTTAATTATGAAAATGCG 30882 | || || || ||||| || || | |||||||| || | | ||| | |||| || || Sbjct 1277 TAACTTCTGCTATTAGTGCTGGATGGGATAAAAT-TCAAGTTGTTGACTATGGCAAGGCT 1335 Query 30883 CAAGAGTATCTTGATCACATTTTTGTTATGACGTACGATTTTAAAGGCGCTTGGTCTAAC 30942 ||| | ||| | ||||| ||||| | |||| ||||| || || || || ||||| || Sbjct 1336 CAAAATTATATGGATCATATTTTCTTGATGAGTTACGACTTCAAGGGAGCCTGGTC-AAA 1394 Query 30943 ACGGACT-TGGGATATCACACTACACTTTATTCACCCTCTTGGAACGCTGAAGAAAAATA 31001 ||| | ||| |||| || || | || | || | ||||| | | |||| || Sbjct 1395 TGATACTCTTGGACATCAAACGCCATTGTACGCGCCTGCGTGGAATCCCAAGGAAACTTA 1454 Query 31002 TACTGCCGAGTACGCGACAAAGGAGTTGTTAAAACAAAACGTCAATAGTAAGAAAATAGT 31061 || | || | || ||| | ||| | || || ||| |||||| || || Sbjct 1455 CACATCTGACTTCGGAGTAAAATACTTGCTGGCGCAGGGAGTGAATCCTAAGAAGATTGT 1514 Query 31062 GCTAGCTGTTGCAATGTACGGAAGAGGGTGGACGGGTGTGCATGACATAAAAAACAACAA 31121 ||| |||||| ||||| || | || ||||| || || ||||| || |||||| Sbjct 1515 AGTAGGTGTTGCTATGTATGGTCGTGGCTGGACTGGCGTTCATGATTACGAAGACAACAT 1574 Query 31122 TCCCTTTACGGGTGTAGCTCAGGGGCCGATTAAAGGAACTTGGGAAAGTGGAGTTGTAGA 31181 |||||| || || ||| || || | |||||||||||| || |||||||| || Sbjct 1575 TCCCTTCACAGGCAACGCTACTGGACCTGTCAAAGGAACTTGGCAAGACGGAGTTGTTGA 1634 Query 31182 TTACA 31186 |||| Sbjct 1635 CTACA 1639 >seq20505 Length=7550 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||||||||| | | | ||| | ||| | |||| ||||||||||||||||| |||| Sbjct 4619 ACCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAGA 4560 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 |||| || | || || || || ||||| | | || ||||| ||||| || || Sbjct 4559 CAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGTGG 4500 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || |||||| || ||||| || | | |||| ||||| | | |||| Sbjct 4499 AATACCTTCCTTATCTTGGATTTTAGCTTTTACATTTTCTATAGTATCAGAGGCCTCCAC 4440 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||| | || ||||||||||| || || || || || ||||| ||||| ||| Sbjct 4439 CTCAAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCATTGTG 4388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419696999884727