Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20elevatus_20bari_20[genbank_20GCA_5F900068365.1_202017- 04-25] 302,727 sequences; 364,783,738 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq18397 100 3e-16 seq6948 86.0 7e-12 >seq18397 Length=6272 Score = 100 bits (110), Expect = 3e-16 Identities = 143/196 (73%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 21500 TCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTT 21559 ||||||||| || | |||||| || || || |||||||| | |||| ||||| Sbjct 1577 TCATCCCTAGAAATAAGTTCATTGCTGAAAGTCAATCCGGGCATCAGACCTCGTTTTTTC 1518 Query 21560 AACCAAAATATTGACGCAAATGCT-CCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGC 21618 |||||||||||||| ||||| ||| ||||| || || || |||||||| || ||||| || Sbjct 1517 AACCAAAATATTGAAGCAAA-GCTGCCTGAGAAAAATATTCCCTCAACCGCTGCAAAAGC 1459 Query 21619 AACTAATCGTTCACCGTATGTAG-ATTCTTTATCCAATATCCATTTTTCTGCCCATTTTG 21677 || || ||||| || |||||| |||| | | ||||| | | ||||| | || Sbjct 1458 AATTATACGTTCTCCAAATGTAGCCGTCTTGCTGC-CGATCCACTGTAACGCCCAGTCTG 1400 Query 21678 CCTTTTCTTTAATACA 21693 |||||| |||| ||| Sbjct 1399 CCTTTTTCTTAACACA 1384 >seq6948 Length=7233 Score = 86.0 bits (94), Expect = 7e-12 Identities = 216/323 (67%), Gaps = 8/323 (2%) Strand=Plus/Plus Query 131860 TCCTATGACTCCTGTTAAACCTATGTTGGCTGATGTATGCGAATCTCTAGAAAAAGCAAT 131919 || ||||||||| || ||| ||||| ||||| | ||| | || | |||| || || Sbjct 2316 TCTTATGACTCCAGTATTACCGATGTTAGCTGAAGCTTGCAAGTCAGTTGAAATGGCTAT 2375 Query 131920 AGATAAATATAAAGATGGAATGTATTCAGAGGTAAAATATGATGGGGAGCGTGTACAAAT 131979 | |||| | | |||| |||| || ||| ||||||||||||| || || || ||| | Sbjct 2376 GAAAAAATGTCCAAATGGCATGTTCTCTGAGATAAAATATGATGGAGAACGGGTTCAAGT 2435 Query 131980 TCATAAAAAAGATAATGTATACAATTATTTTAGTAGAAATTTAAAACCTGTTCTTACTCA 132039 |||||||| | |||| | ||| |||||| | |||||||| || | |||| Sbjct 2436 CCATAAAAAGGGAAATGAGTTCAAATATTTTTCCCGTGCCTTAAAACCAGTAATGGCTCA 2495 Query 132040 TAAAATTGATGGATTTGATAAACTGTTGA-CTGATGCATTTCCCACAGCAAAAAACTTCA 132098 ||| || | |||| | | | | || | | | |||||||| | || | | | || | Sbjct 2496 CAAAGTT-AGTCATTTTAAAGATTATTTACCCAAAGCATTTCCTAAAGGAGATGATTTGA 2554 Query 132099 TTTTAGATGCGGAATTAATAATGATAGAT-ACAAAA--TCAAATTCATTTTTACCATTTG 132155 | || ||||| ||| || | ||| | ||| ||| | ||| || || || || | Sbjct 2555 TCTTGGATGCTGAAGTACTTATGGTTGATGTCAATACTGGAAAACCA---TTGCCTTTCG 2611 Query 132156 GTTCATTAGGTATACATAAAAAA 132178 || |||||||||| || ||| || Sbjct 2612 GTACATTAGGTATTCACAAACAA 2634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529888040831480