Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20elevatus_20bari_20[genbank_20GCA_5F900068365.1_202017- 04-25] 302,727 sequences; 364,783,738 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq7802 535 5e-147 seq18397 86.0 8e-12 >seq7802 Length=17912 Score = 535 bits (592), Expect = 5e-147 Identities = 1107/1624 (68%), Gaps = 45/1624 (3%) Strand=Plus/Plus Query 61975 TTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGAT 62034 |||||||| | ||||| | || || ||||| | | | ||| ||||| || |||| | Sbjct 1886 TTATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGT 1945 Query 62035 AGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGG 62094 |||||||||| ||||||| ||| | |||| ||| ||||| || ||| ||||| Sbjct 1946 AGTACATTCCTGTTTTTAAACCCATTTTCCAAGCGTGGAAATGAATCGACGTAAGTTTTC 2005 Query 62095 AATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCC 62154 ||| | || | || | ||| || || | |||||||||||| || || || ||||| | Sbjct 2006 CATAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATAAAAGCTCCTC 2065 Query 62155 TGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACT 62213 | || || ||||| | |||| || || ||| ||| ||||| | ||||| || || | Sbjct 2066 TATCAGCTGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAAT 2125 Query 62214 CGCTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATGGATCCACCATCTGCCATAATC 62270 | |||| | |||| |||| ||| | |||| | || |||||| | ||||| Sbjct 2126 CTCTTATT-TCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATA 2184 Query 62271 CTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGA 62330 || || || || |||| ||| || | | || ||| | | || ||||| | Sbjct 2185 AGGTTTTTCATATCTTCATCCCACAAATCAGCCCGAGTCAAATCAGTCAGAAGATGATGG 2244 Query 62331 TTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 62390 || ||||| ||||||||||||| || ||||| | ||||||||| ||| | ||| Sbjct 2245 TTCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAGGGT 2304 Query 62391 TCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 62450 || | || ||| | || || | |||||| ||||| || |||||||||||||| || | | Sbjct 2305 TCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGAGCTATC 2364 Query 62451 AATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCC 62508 |||| | ||| | | ||| ||||| || || || ||||| || |||| | || Sbjct 2365 AATAGAGAATTGCGCAAACC--ATGTTTTGCTATCTTTTCTTTAAGGACAGCCCAGTCCC 2422 Query 62509 AAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTAC 62567 |||| || | || || || ||||| | || || | || Sbjct 2423 AAAGGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCTTGGCTTGCTGGAC 2482 Query 62568 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 62627 ||| |||||| ||||| ||||| || ||||||| ||||||||| || |||||| Sbjct 2483 TC-CCTTGATATGTGCTGTATGCACCTTCTTTTTCAGCTAATTCACAACTAGCTTCTAAT 2541 Query 62628 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 62687 ||||| |||||||| ||||| || || | | ||| ||| | ||||| | || || Sbjct 2542 GCACCATAATAAATAGTTTCAAATATTTGTTGATTGAGAAGTATTGCTTTCTCACTTTCG 2601 Query 62688 AATGGATAATTTAAGAGA-ATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGG 62746 | | ||| | | | | | |||||| || || | || |||||||||||||| ||||| Sbjct 2602 TAAG-ATATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATACCAATAGG 2660 Query 62747 TCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 62806 |||||||||| |||| || ||| ||||| || | ||||||| |||||| ||| |||| Sbjct 2661 TCTATGTCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAATTAACATCAATAAC 2720 Query 62807 TTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA 62863 ||| || | |||| | ||||| ||||| | || || | ||| ||||| ||| Sbjct 2721 TTTGTTTAAATTTTGAGTTACAAT--CTTTGTG-ATTTCTTTTAATTTTTTAAAATTAAA 2777 Query 62864 TCGCCCATCTATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTC 62923 || || | ||||||||||| | || | || || || || || || || || || Sbjct 2778 TCTGTTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTC 2837 Query 62924 ATTAGCATCCGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCC 62980 || | || | | ||||| | | ||||||||||||||| ||||| || ||||| || Sbjct 2838 AT---CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCC 2894 Query 62981 TAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACC 63040 | ||||| ||||||||||||| ||||||| ||||||||||| | ||| |||| ||||| Sbjct 2895 AAGATTTTTTTGATTACTCTTTCTGTTACAAGCATCCTTATACAACATGTATGGTGTACC 2954 Query 63041 AGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTT 63100 ||| || | || | ||||||||| | ||||| | || |||| | | | | ||| Sbjct 2955 AGTCTCCACTTGGGCTTCTATAATTGACTTCCATAACTCTTGAGCTCTGACTT--GTTTT 3012 Query 63101 GTATCTCCTTTCTCTT--TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACA 63158 || || ||| |||| || ||| ||||| | | ||| || || ||||| || || Sbjct 3013 ATAAATCGTTTTTCTTCTTCATATTTGGTATATAGTTCTTCAAATTCCTCTCCA-AAGCA 3071 Query 63159 TTGTCCAAT-CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC-- 63215 | | | |||||||| |||| |||||||| | ||| || |||||||| Sbjct 3072 GTCAGCGAGGCCAGGACAGTCATGAGGACACATGAGACTCCAAACT---TCATCCTTTTC 3128 Query 63216 -ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 63274 |||| ||||||||| ||||| || ||||| | ||| ||| || ||||| | ||| Sbjct 3129 TACTCTTTTCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCAT 3188 Query 63275 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63334 ||| || || ||||| ||||| || | ||| | ||| | | || || | |||||| || Sbjct 3189 TTCTTCCTTACCTGTGTTCTTCTTTAAATCCAAGAATTCAAATATGTCCGCATGCCAAGG 3248 Query 63335 TTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 63394 || || || || || | | || || ||||||||||| || ||||||| ||||| || Sbjct 3249 CTCTAAATAAATTGCAAATGCGCCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGC 3308 Query 63395 GGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGA 63454 || || ||||| |||||||||||||| | | ||| ||||| | ||||| || || | Sbjct 3309 AGTATTGTTATACACTCTCAACATTGGCACTAGACCATTTGAGACCCCATTAGTGCCAGC 3368 Query 63455 GATATAGCTTCCACTG-GCACGAAT---ATTACTAATTGATAGACCTATTCCCCCTGCCA 63510 || || || ||| || | || || || || || |||||| || || || Sbjct 3369 TATGTAAGAACC-CTGAGCTCTGATGCAATGTGTA--TG-TAAACCTATGCCACCAGCAG 3424 Query 63511 TTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGA 63570 |||||| |||||||| ||| ||||||| || ||| | ||||| || |||||||| || Sbjct 3425 ATTTAGAAATTAATGCACATTGTTTTAAAGTATCAAAAATACCTTCAATGCTATCGTCTT 3484 Query 63571 TCAT 63574 |||| Sbjct 3485 TCAT 3488 Score = 102 bits (112), Expect = 1e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 63755 CTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63814 ||| |||||||| |||||||| || ||| ||||||||||||| ||||||||||||||||| Sbjct 4016 CTTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAGTTGTA 4075 Query 63815 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTT 63865 | ||| |||| || |||| ||| | |||| | ||| ||||| | ||| Sbjct 4076 TTTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTGTTTTT 4126 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 63966 TTTTTTGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCC 64025 || || || || || |||| ||| |||| ||||||||||| || | |||||||||||| Sbjct 4759 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCG 4818 Query 64026 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 64085 ||||| | |||||| ||| ||||| ||||| || || ||| | || | || | ||| Sbjct 4819 GGATGATCTGTAGTCTTAGTAGCTGCAATTTCAGCAGCTAGATTATCAAGCTCAGCAGTT 4878 Query 64086 GTTACTCCATTATATATTCC 64105 ||||| ||| |||||| || Sbjct 4879 GTTACACCAGAATATATGCC 4898 >seq18397 Length=6272 Score = 86.0 bits (94), Expect = 8e-12 Identities = 81/103 (79%), Gaps = 3/103 (3%) Strand=Plus/Minus Query 33785 TATCTTTAGATATA---TCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 33841 ||| | ||| |||| ||||||||||| | |||||||| ||||| || || ||||||| Sbjct 319 TATATATAGGTATAANNTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTAT 260 Query 33842 ACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAA 33884 |||| | ||| || || ||||||||||||||| ||||| || Sbjct 259 ACATCTGCCATATATCTGGATATTGGATTGGGAATATAACGAA 217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620589913287320