Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20elevatus_20bari_20[genbank_20GCA_5F900068365.1_202017- 04-25] 302,727 sequences; 364,783,738 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq50497 178 1e-39 seq7802 154 1e-32 seq22291 134 1e-26 seq20505 107 2e-18 seq22292 89.7 5e-13 seq91707 84.2 2e-11 seq84803 84.2 2e-11 seq19754 84.2 2e-11 >seq50497 Length=2916 Score = 178 bits (196), Expect = 1e-39 Identities = 335/492 (68%), Gaps = 8/492 (2%) Strand=Plus/Plus Query 23643 GCCTACTTTGTCGAGTGGGGCGTATATCCCAGACAATTTCCCGTAGACAAAGTGCCCGTG 23702 |||||||| || || ||||| || ||||| || |||| ||||| || | || | Sbjct 685 GCCTACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTGGATCGTATACCTATA 744 Query 23703 CCTAATTTGTCACATTTGCTCTACGGCTTCGTACCTATATGCGGCGGCGAGGGAATTAAC 23762 |||||| | | || |||||||||||||| | || || |||||||| || || || || Sbjct 745 CCTAATCTTACTCACTTGCTCTACGGCTTTATTCCAATTTGCGGCGGTGATGGCATCAAT 804 Query 23763 GACGCTCTCAAAACCGTGCCGGGCAGTTTCGAGGCGCTGCAGCGTTCGTGCGCGGGCCGC 23822 || | | ||| | ||||||||| | || || ||||| || || ||||| Sbjct 805 GATAGTTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTACAGCGGTCCTGTAGCGGCCGT 864 Query 23823 GCCGACTTCAAGGTATCCATCCACGATCCGTGGGCAGCTCTTCAGAAGCCGCAGAAGGGA 23882 | |||||||| || || ||||||||||| |||||||| | || || || || || ||| Sbjct 865 GAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGGA 924 Query 23883 GTGTCGGCGTGGAACGAGCCGTATCGTGGAAACTTTGGTCAGTTGATGGCAACGAAACTG 23942 |||| | ||||||||||| ||| || |||||||| || || ||| || |||| Sbjct 925 TTGTCTTCATGGAACGAGCCCTATAAAGGCAACTTTGGCCAATTAATGTCACTAAAACAA 984 Query 23943 GCGTATCCGCACTTGAAAGTGCTACCTTCGATCGGTGGCTGGACGCTGTCTGATCCGTT- 24001 || || | ||||| | || || || || || || |||||||| | ||||| || Sbjct 985 GCACGCCCTGAATTGAAGATTCTTCCCTCTATTGGAGGGTGGACGCTTGCCGATCCTTTC 1044 Query 24002 ---TTATCACATGCACGAGCCCAGCGTACGCCGTGTGTTTATCGACTCTGTCGAAGAGTT 24058 || | | || | | || | || | ||| | | || || | ||||| Sbjct 1045 TTCTTTTTAGTTGACAAATCTAAGAGAACAC----GATTTGTGCAGTCAGTAAAGGAGTT 1100 Query 24059 TTTGTTAACGTGGAAATTCTTTGACGGCGTCGACATTGATTGGGAGTTCCCCGGCGGCAA 24118 | | |||| ||||||||||| || || || || || |||||||||||||| || ||||| Sbjct 1101 TCTTCTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGGCAA 1160 Query 24119 AGGGGCAAATCC 24130 ||| || || || Sbjct 1161 AGGTGCTAACCC 1172 >seq7802 Length=17912 Score = 154 bits (170), Expect = 1e-32 Identities = 446/685 (65%), Gaps = 10/685 (1%) Strand=Plus/Plus Query 145103 TTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTG 145162 || || || |||||||||||||| || | ||||| || ||||| || || | || || Sbjct 2290 TTTGATGTAAAGGGTTCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTC 2349 Query 145163 GGCATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGC 145222 ||||| || | ||||| |||||||||| || || || || | ||| || || Sbjct 2350 GGCATAGGAGCTATCAATAGAGAATTGCGCAAACCATGTTTTGCTATCTTTTCTTTAAGG 2409 Query 145223 GTACCCCAATCCCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCC 145282 | |||| ||||| || || || | ||||||||| || ||||| | || || Sbjct 2410 ACAGCCCAGTCCCAAAGGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCT 2469 Query 145283 TCGCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTT--GGCGAGCTCGC 145340 | ||| || || || |||||| | | ||||| ||| || |||| || | || | Sbjct 2470 TGGCTTGCTGGACTCCCTTGATATGTGCTGTA--TGCACCTTCTTTTTCAGCTAATTCAC 2527 Query 145341 AACTCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCG 145400 |||| || || | || || ||||||| || || ||||| ||||| || || | Sbjct 2528 AACTAGCTTCTAATGCACCATAATAAATAGTTTCAAATATTTGTTGATTGAGAAGTATTG 2587 Query 145401 CTTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTC 145460 ||| || || ||||| | || | || || ||||| ||||| || | ||||| | | Sbjct 2588 CTTTCTCACTTTCGTAAGATATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACAC 2647 Query 145461 CCACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGAT 145520 | | || || || | |||| |||| || | | || || |||||| || Sbjct 2648 CAATACCAATAGGTCTATGTCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAAT 2707 Query 145521 TACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTT 145580 || || |||| ||| || || ||| | ||| | |||||| || | || |||| Sbjct 2708 TAACATCAATAACTTTGTTTAAATTTTGAGTTACAATCTTTGTGATTTCTTTTAATTTTT 2767 Query 145581 CAAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAAT 145640 ||| | ||| | | ||||| | || | || | || || || || | | Sbjct 2768 TAAAATTAAATCTGTTATTTTCAACAAACA------TGTTAAGTGCTATGGAAGCAAGGT 2821 Query 145641 TACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTAC 145700 | || |||||| || || | ||||||| || | ||| | ||| | |||||||| Sbjct 2822 TGCACACTGCCACTTCATCTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTAC 2881 Query 145701 ATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCA 145760 |||| || || || ||||||| |||||||| || ||||| || || ||||| || | || Sbjct 2882 ATTTAATAGTGCCAAGATTTTTTTGATTACTCTTTCTGTTACAAGCATCCTTATACAACA 2941 Query 145761 TGTACGGTCCGCCAGTCTCCACCTG 145785 |||| ||| ||||||||||| || Sbjct 2942 TGTATGGTGTACCAGTCTCCACTTG 2966 >seq22291 Length=1216 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| |||||| |||| ||| | ||| ||||||||||| |||||||| || | Sbjct 970 CCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 911 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || | ||||| || || |||| | ||||||||| || |||||| Sbjct 910 AGGGTGCGTCCATCTTCCAATTGCTTACCGGCAAAGATAAGACGCTGCTGATCAGGAGGG 851 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 || || |||||||| ||| ||| |||| | | || | |||||| | || || | Sbjct 850 ATGCCCTCTTTGTCT-TGAATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCAC 792 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||| || || ||||| ||||| || ||||||||||| Sbjct 791 TTCCAGGGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 744 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| |||||| |||||||| | ||| ||||||||||| |||||||| || Sbjct 1198 CCACCTCGCAGACGCAGTACTAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCTGAT 1139 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || ||||||||||| || |||| | ||| || || || || || Sbjct 1138 AAGGTACGTCCATCTTCCAGCTGCTTGCCGGCAAAGATAAGACGTTGTTGATCTGGGGGA 1079 Query 131128 ATTCCTTCTTTGTC 131141 || || ||||| || Sbjct 1078 ATACCCTCTTTATC 1065 >seq20505 Length=7550 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | || ||||| | ||| | || || ||||||||||||||||| || | Sbjct 4618 CCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAGAC 4559 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || ||||| || || || || |||| ||||| |||||||| || || Sbjct 4558 AATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGTGGA 4499 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || |||||| || | | || | |||||| | || ||| | Sbjct 4498 ATACCTTCCTTATCTTGGATTTTAGCTTTTACATTTTCTATAGTATCAGAGGCCTCCACC 4439 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||||||||| || || || || |||||||| ||||| Sbjct 4438 TCAAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCAT 4392 >seq22292 Length=1070 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| |||||| |||||||| | ||| ||||||||||| |||||||| || Sbjct 233 CCACCTCGCAGACGCAGTACTAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGAT 174 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || ||||||||||| || |||| | ||| || || || || || Sbjct 173 AAGGTACGTCCATCTTCCAGCTGCTTGCCGGCAAAGATAAGACGTTGTTGATCTGGGGGA 114 Query 131128 ATTCCTTCTTTGTC 131141 || || ||||| || Sbjct 113 ATACCCTCTTTATC 100 >seq91707 Length=5726 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 131113 TGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTA 131172 |||||||| || || ||||| ||||| || ||| || ||||| | ||| | ||| Sbjct 1955 TGCTGGTCTGGGGGAATTCCCTCTTTATCTTGGATCTTGGCCTTGACATTCTCGATAGTG 2014 Query 131173 TCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGC 131232 || | || ||||| || | ||| | ||| ||||| ||||| ||||| |||||||||||| Sbjct 2015 TCCGAGGGCTCGACCTCAAGGGTGATGGTCTTACCCGTTAGGGTTTTCACGAAAATCTGC 2074 Query 131233 ATGA 131236 |||| Sbjct 2075 ATGA 2078 >seq84803 Length=1104 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || ||| || |||||||||| || || ||||| ||||||||||| || | Sbjct 362 CCACCTCTCAGACGAAGTACTAAATGTAAAGTAGATTCCTTCTGAATGTTGTAGTCTGAC 303 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || || || || || ||| | || | | ||| ||||| || || Sbjct 302 AGTGTACGTCCATCTTCAAGTTGTTTTCCAGCGAAAATAAGCCTCTGTTGGTCTGGGGGA 243 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 || || || || || ||| ||| ||||| | | | || | || || | | ||| | Sbjct 242 ATCCCCTCCTTATC-TTGAATTTTTGCTTTAACATTTTCAATTGTGTCAGAAGGCTCAAC 184 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| |||||||| || || |||||||| ||||| ||||| Sbjct 183 TTCAAGAGTAATAGTTTTACCAGTAAGCGTTTTTACAAAAATTTGCAT 136 >seq19754 Length=5595 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| |||||| || | || |||||||| || || || || || | Sbjct 4716 CCACCCCGTAGACGCAACACTAAGTGCAAAGTAGACTCCTTCTGGATATTATAGTCAGAC 4657 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || || ||||| || ||| | || | | || || || ||||| Sbjct 4656 AATGTGCGCCCATCTTCGAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGA 4597 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| | | ||| || | | || | ||||| | | || | Sbjct 4596 ATGCCTTCCTTGTCT-TGAATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGCTTCCAC 4538 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 || | || | |||||| || |||| |||||||||||| || ||||||| Sbjct 4537 TTCCAATGTGATGGTTTTCCCAGTTAAAGTTTTTACGAAGATTTGCATGA 4488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 470226662263680