Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20elevatus_20bari_20[genbank_20GCA_5F900068365.1_202017- 04-25] 302,727 sequences; 364,783,738 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq50497 178 1e-39 seq22291 134 1e-26 seq22292 95.1 1e-14 seq225328 84.2 2e-11 seq44048 84.2 2e-11 >seq50497 Length=2916 Score = 178 bits (196), Expect = 1e-39 Identities = 765/1193 (64%), Gaps = 31/1193 (3%) Strand=Plus/Minus Query 95829 ATATTCATGGCATTAAGCAGATCGCCATTGTCAGCGTCTATTTCCCAGGCAAACAAACCT 95888 || ||||||||||| || ||||| || || |||||||| | |||||| || || | ||| Sbjct 1862 ATGTTCATGGCATTCAGTAGATCACCGTTATCAGCGTCCACTTCCCAAGCGAAGAGACCA 1803 Query 95889 CCTAACTTGTTTTGTTCCACATATCGACCTTTAGCTATAACAGAATCAACACTATCATAT 95948 |||| |||||| | | |||||| ||| || | ||||| || | || ||||||| Sbjct 1802 CCTAGCTTGTTATTTCTTACATATTTACCCTTTTCAATAACGGATCTAGCATTATCATAG 1743 Query 95949 GAAATTAAATCGCCT-TTGGTTTTATCAAAAACGTAGGCGGCTTTTGCTACGTTGTCA-A 96006 | | | ||| || ||| | | | || | |||| | ||||| || || ||||| | Sbjct 1742 GTTACAAGATCTCCAGTTGATGGTCTGAAGA-CGTAAGGGGCTTGGGCGACATTGTCGTA 1684 Query 96007 ATTTAACAATATATTTGTTT-----ATTTCGTTTTTGATTTGGCGATAATCAACAACGCC 96061 || ||| || || ||||| || || | | || |||||||| || Sbjct 1683 ATGGAACTCCCACTTGCCTTGAGCAATTTCATTCGCAATCTCCCTGTAGTCAACAACTCC 1624 Query 96062 ATCTTCCCAAGTGCCCGAAACGGGCCCGTTACTACTTCCCAAAAAATAGTTATCGTTTTC 96121 |||| |||||| || || || || || | || || | | || ||| Sbjct 1623 GTCTTGCCAAGTTCCTTTGACAGGTCCAGTAGCGTTGCCTGTGAAGGGAATGTTGTCTTC 1564 Query 96122 GTAATT-TGACACTCCAGTCCAGCCGCGACCGTACATGGCCACGCCCACAATAATTTTGC 96180 ||||| ||| || ||||||||||| ||||| ||||| || || || || | ||| || Sbjct 1563 GTAATCATGA-ACGCCAGTCCAGCCACGACCATACATAGCAACACCTACTACAATCTTCT 1505 Query 96181 GCGGGTCCACGCCTTGATTTGTGAGCAA---TTTAACGGCATGGTCCGTGTTGTACAGCT 96237 || | ||| || || | ||||| ||| || | ||| | |||| | Sbjct 1504 TAGGATTCACTCCCTGC---GCCAGCAAGTATTTTACTCCGAAGTCAGATGTGTAAGTTT 1448 Query 96238 CGTTTGGGTTCCAACTCGGCGCGTACAGTGTAGTTTGGTATCCCAAATCAATGTTTGACC 96297 | || || ||||| |||||||||| || ||||| | ||| | | | ||||||| Sbjct 1447 CCTTGGGATTCCACGCAGGCGCGTACAATGGCGTTTGATGTCCAAGAGTATCATTTGACC 1388 Query 96298 ACGCGCCTTTAAAATCGTAGCTCATGAGAAATATTTTGTCGAGGAACTTTTGCGCAACGT 96357 | || || || || ||||| ||||| | || || | || | | ||||| || | Sbjct 1387 AGGCTCCCTTGAAGTCGTAACTCATCAAGAAAATATGATCCATATAATTTTGAGCCTTGC 1328 Query 96358 CGTATTTTACTACAGCAATTTTGTCGTGGCCGGCACTGATTGCACTTGTCAACTCGTACG 96417 | || | || || |||||| || || ||||| || ||| || || ||||| Sbjct 1327 CATAGTCAACAACTTGAATTTTATCCCATCCAGCACTAATAGCAGAAGTTAATTCGTATT 1268 Query 96418 TTTTGCCCGTTTGCAGTTGCAA-CTCGTCTAACATCACGCGCAATTCCTTTAATAGAATG 96476 | || || | | || || | ||| || | |||| | || | ||| || | | | | Sbjct 1267 TCTTACCATTCTT-AGCTGAGAGCTCATCGAGCATCTCACGTAGTTCTTTCATCAAACTT 1209 Query 96477 TTGTACGTGTCAGCGTCGCGCTCTTTGTTGCCGAGCGTC-GGGTTGGCGCCTTTACCGCC 96535 || ||| | || ||| | | ||||| ||| ||||| || ||||| || || Sbjct 1208 ACATAACAATCACCATCT---TCTGGGCTACCGAG-GTCAGGGTTAGCACCTTTGCCACC 1153 Query 96536 CGGAAATTCCCAGTCGATGTCCACTCCGTCGAAAAATTTCCAAACCTGCAAAAATTCTCT 96595 || || ||||| ||||| || || || ||||| |||||||| | | ||| || | Sbjct 1152 AGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTCCATGTTAGAAGAAACTCCTT 1093 Query 96596 GACGGAGTCTACAAACACGCGCCGTTTTTCCGCGTCGTGCATGTAATA----GAACGGGT 96651 || || | ||||| || | | | | | || || ||| | ||| || | Sbjct 1092 TACTGACTGCACAAAT---CGTGTTCTCTTAGATTTGT-CAACTAAAAAGAAGAAAGGAT 1037 Query 96652 CGGACAGTGTCCAGCCGCCGATAGACGGCAGAATTTTAAGGTGTGGATTAGCCAGTTTGG 96711 ||| || ||||| || || ||||| || ||||| || | | || || |||| Sbjct 1036 CGGCAAGCGTCCACCCTCCAATAGAGGGAAGAATCTTCAATTCAGGGCGTGCTTGTTTTA 977 Query 96712 CCGCCATCAACTGACCAAAGTTGCCTTTGTAGGGCTCGTTCCAAGCAGACACGCCCTTTT 96771 | ||| || || |||||||||||||| |||||||||||||| | ||||| || |||| Sbjct 976 GTGACATTAATTGGCCAAAGTTGCCTTTATAGGGCTCGTTCCATGAAGACAATCCTTTTT 917 Query 96772 GCGGTTTTTGTACTGCGGCCCAAGGGTCGTGAATAGCAACTTTAAAATCTGAACGGCCCT 96831 | |||||||||| ||| ||||| || ||||| || | ||||| || || |||||| Sbjct 916 GTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTGAAGTCCTCACGGCCGC 857 Query 96832 GGCAAGAGCGTTGCAGCGCTTCAAAACTACCGGGTATGGTTTTAAGGGCATCGTTAAGGC 96891 || || || || || |||| ||||| || || ||| | ||| || | || Sbjct 856 TACAGGACCGCTGTAGTGCTTGGAAACTGCCTTCGATCTCTTTTAAACTATCATTGATGC 797 Query 96892 CGTCGCCGCCACAAATGGGTATAAACCCGTACAACAAATGTGACAAGTTGGGCAGCGGCA 96951 | || ||||| ||||| || ||||| ||||| | ||| || | | || || | || | Sbjct 796 CATCACCGCCGCAAATTGGAATAAAGCCGTAGAGCAAGTGAGTAAGATTAGGTATAGGTA 737 Query 96952 CTTTGTCCACCGGAAAGTTACGACCATACACGCCCCATTCCACAAAATACGCA 97004 ||||| || || || | | ||| || |||||||| || || || ||| Sbjct 736 TACGATCCACGGGGAATTTCCTAGGATAGACACCCCATTCTACGAAGTAGGCA 684 >seq22291 Length=1216 Score = 134 bits (148), Expect = 1e-26 Identities = 171/233 (73%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | |||||| | ||| || || ||||||||||| ||||||||||| | | Sbjct 970 CCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 911 Query 16769 ATGGTTTTGGCGTCC----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCAC 16824 | ||| |||||| |||||||| || || ||| | ||||| ||||| || || Sbjct 910 AGGGT----GCGTCCATCTTCCAATTGCTTACCGGCAAAGATAAGACGCTGCTGATCAGG 855 Query 16825 AGGCACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGC 16882 ||| | |||||||||||| ||||| ||| || || | | | ||| || ||| Sbjct 854 AGGGATGCCCTCTTTGTCTTGAATTTTAGCT--TTTACATTTTCAATAGTATCAGAGGGT 797 Query 16883 TCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| ||||| ||| ||||| ||||| || || ||||| |||||||||||||| Sbjct 796 TCCACTTCCAGGGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 744 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || |||| || ||| | ||| || || || |||||||| || || || || | Sbjct 514 CCGCCACGAAGCCGCAATACTAAATGTAGGGTAGATTCCTTTTGAATATTATAATCAGAT 455 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || |||| |||||| || ||| |||| |||| |||||| || || Sbjct 454 AATGTACGGCCATCTTCCAGTTGTTTTCCAGCAAAAATCAGCCTCTGTTGATCTGGGGGA 395 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||||||||| || ||||| |||||| | | | ||||||| ||| || Sbjct 394 ATACCCTCTTTGTCTTGGATCTTTGC--CTTCACATTTTCAATAGTGTCGGAGGGTTCTA 337 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | |||||||||||||| || || || || ||||| ||||||||| Sbjct 336 CCTCTAAAGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCATT 287 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | |||||| | ||| || || ||||||||||| ||||||||||| | Sbjct 1198 CCACCTCGCAGACGCAGTACTAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCTGAT 1139 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || |||| || ||||| ||| | ||||| || ||||| || || Sbjct 1138 AAGGTACGTCCATCTTCCAGCTGCTTGCCGGCAAAGATAAGACGTTGTTGATCTGGGGGA 1079 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||||| || ||| | ||| || | | | ||||| |||||| | Sbjct 1078 ATACCCTCTTTATCTTGAATCTTAGCCTTTACATTTTCAATGGTGTCAGACGGCTCCACT 1019 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || || || || || || || || |||||||| || ||||| Sbjct 1018 TCCAGAGTTATAGTCTTGCCTGTTAGTGTCTTGACAAATATTTGCAT 972 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/233 (68%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | || ||||| || || || || || ||||| || |||||||| | Sbjct 286 CCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAA 227 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || |||| |||||||| || || || |||| | || ||||| || ||| Sbjct 226 AGAGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGA 167 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| ||||| ||| || || | | | ||| ||| || || Sbjct 166 ATGCCTTCCTTGTCTTGAATTTTGGCT--TTTACATTTTCAATAGTATCGGAAGGTTCAA 109 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 ||||| || |||||||| || || || ||||| ||||| |||||||||||| Sbjct 108 CTTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTTG 56 Score = 82.4 bits (90), Expect = 6e-11 Identities = 150/216 (69%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGG--CGT 16781 ||||| | |||| || || || ||||| ||||||||||| | || || | | | | Sbjct 727 AGTACTAAGTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAG--ATAGTGTACGACCAT 670 Query 16782 CCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGT 16841 | || ||||| ||||||||| ||||||| || ||||| ||| ||| | ||| ||||||| Sbjct 669 CTTCTAATTGCTTGCCCGCAAAAATAAGACGTTGTTGATCCGGAGGAATGCCTTCTTTGT 610 Query 16842 C--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGAT 16899 | || || ||| ||||| | | | ||||| | || ||| | || || Sbjct 609 CTTGGATTTTAGCT--TTCACATTTTCAATTGTGTCAGAAGCTTCAACTTCTAAAGTAAT 552 Query 16900 GGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||||| || || ||||| ||||| || ||||| Sbjct 551 TGTTTTTCCAGTGAGTGTTTTAACAAAGATTTGCAT 516 >seq22292 Length=1070 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| || | || |||| || || |||||||| ||||| || ||||| |||| | Sbjct 689 CCTCCTCGGAGACGGAGAACCAAGTGAAGGGTGGACTCTTTTTGGATATTGTAATCGGAC 630 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || |||| ||| || || ||| | ||||| || ||||| || ||| Sbjct 629 AGGGTGCGGCCATCTTCCAGTTGCTTACCAGCAAAGATAAGACGTTGTTGATCTGGAGGA 570 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || || || ||| | ||| || || | | | |||||| ||||| Sbjct 569 ATTCCTTCCTTATCTTGAATCTTAGCT--TTAACATTTTCAATGGTGTCGGATGGCTCAA 512 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||| || || |||||||| || || ||||||||||| || |||||| Sbjct 511 CTTCCAAAGTTATTGTTTTTCCAGTAAGTGTTTTGACAAATATTTGCATT 462 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | |||||| | ||| || || ||||||||||| ||||||||||| | Sbjct 233 CCACCTCGCAGACGCAGTACTAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGAT 174 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || |||| || ||||| ||| | ||||| || ||||| || || Sbjct 173 AAGGTACGTCCATCTTCCAGCTGCTTGCCGGCAAAGATAAGACGTTGTTGATCTGGGGGA 114 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||||| || ||| | ||| || | | | ||||| |||||| | Sbjct 113 ATACCCTCTTTATCTTGAATCTTAGCCTTTACATTTTCAATGGTGTCAGACGGCTCCACT 54 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || || || || || || || || |||||||| || ||||| Sbjct 53 TCCAGAGTTATAGTCTTGCCTGTTAGTGTCTTGACAAATATTTGCAT 7 >seq225328 Length=614 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||||| | | ||||| |||| |||||||| || || || |||||||| | Sbjct 461 CCTCCTCGTAAACGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAG 402 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||||| || ||||| || |||| || || ||||| || || Sbjct 401 AGAGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCTGGGGGA 342 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||||||||| || || ||| || || | | | |||||| ||| || Sbjct 341 ATACCCTCTTTGTCTTGGATCTTGGCT--TTAACATTTTCAATAGTGTCTGAGGGTTCAA 284 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | ||||| ||||| || ||||| || || ||||| |||||||| Sbjct 283 CTTCTAATGTGATAGTTTTCCCTGTCAGTGTCTTTACAAAGATCTGCAT 235 >seq44048 Length=5832 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 29344 GGCGGCGTGGGGCTGAATCTAACGGGCGGCAACCACCTCGTTTTGTTGGAGCCGCACTGG 29403 |||||||| |||||||| || |||| | |||||| | || |||| ||||||||| Sbjct 5805 GGCGGCGTAGGGCTGAACCTGTGCGGCGCGAGCCACCTGCTGCTGCTGGACCCGCACTGG 5746 Query 29404 AACCCGCAGGTGGAGTTGCAGGCGCAGGGCCGCATCCACCGTTTGGGCCAG 29454 ||||||||| ||||| |||||| |||| |||| | |||| |||| ||| Sbjct 5745 AACCCGCAGCTGGAGGAGCAGGCACAGGACCGCGTGTACCGCGTGGGGCAG 5695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 403593433773730