Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20elevatus_20bari_20[genbank_20GCA_5F900068365.1_202017- 04-25] 302,727 sequences; 364,783,738 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq50497 179 4e-40 seq22291 125 7e-24 seq84803 116 4e-21 seq22292 111 2e-19 seq20505 107 2e-18 seq84804 98.7 1e-15 seq19754 93.3 4e-14 seq18397 82.4 8e-11 >seq50497 Length=2916 Score = 179 bits (198), Expect = 4e-40 Identities = 455/679 (67%), Gaps = 16/679 (2%) Strand=Plus/Plus Query 27833 AAAGGCGGCAAGTTCGACATGACAGTGAAGCTGTGCAACGTCGACGGCTGTTCGACAAGT 27892 ||||| || | | | | ||||||||| | || ||||| | |||||||| ||||| Sbjct 511 AAAGGTGGAAGATACCAAATGACAGTGGAACTTTGCAATGAAGACGGCTGCAGTTCAAGT 570 Query 27893 -AGCGCGGTCAAAGTGATCGTCGCCGACACCGACGGTTCTCATCTCGCGCCGCTAGTATA 27951 | | | ||| || |||| ||||| ||||| || |||| | | || || | ||| Sbjct 571 GATCCCACCGAAATTG-TCGTGGCCGATACCGATGGAAGTCATTTACCTCCTCTGGAATA 629 Query 27952 CGATTTCCTCGAAAACAACAAGCGCTTTGAT-AAACATCCCGAGAAAATTGTGGCCGCCT 28010 || ||||| || |||| || | ||||||| || ||| |||||| |||| Sbjct 630 TACATTGGGAGAAAAAAATAAGCCGTTCAAGCAAACATCTGGA-AAAGTTGTGGGTGCCT 688 Query 28011 ATTTCGTCGAGTGGGGCGTGTATCTGCGGCAGTTTCCCGTCGACAAAGTGCCCGCGCCCA 28070 | ||||| || ||||| || |||| || | || ||||| || | || || | Sbjct 689 ACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTGGATCGTATACCTATACCTA 748 Query 28071 ACCTGTCGCACTTGCTGTACGGTTTCGTGCCGATATGCGGCGGCGACGGCATAAACGACG 28130 | || | |||||||| ||||| || | || || |||||||| || ||||| || || Sbjct 749 ATCTTACTCACTTGCTCTACGGCTTTATTCCAATTTGCGGCGGTGATGGCATCAATGATA 808 Query 28131 CCCTCAAGACCGTTCCC-GGCAGTTTCGAGGCGCTGCAGCGCTCGTGCGCCGGGCGCGCC 28189 | || | | || ||||||||| | || || ||||| || || ||| || | Sbjct 809 GTTTAAA-AGAGATCGAAGGCAGTTTCCAAGCACTACAGCGGTCCTGTAGCGGCCGTGAG 867 Query 28190 GACTTCAAGGTGACGATCCACGATCCCTGGGCCGCCATTCAGAAGCCGCAAAAGGGCGTC 28249 |||||||| || | ||||||||||| ||||| || | || || || ||||| || | Sbjct 868 GACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGGATTG 927 Query 28250 TCTACGTGGAACGAGCCGTACAAAGGCAACTTTGGGCAATTGATGAGCGTCAAATTAGCC 28309 ||| | ||||||||||| || |||||||||||||| ||||| ||| | ||| ||| Sbjct 928 TCTTCATGGAACGAGCCCTATAAAGGCAACTTTGGCCAATTAATGTCACTAAAACAAGCA 987 Query 28310 AATCCGCACTTGAAGGTGCTGGCGTCGATCGGCGGCTGGACGCTGTCGGACCCATTC--- 28366 || | |||||| | || | || || || || |||||||| | || || ||| Sbjct 988 CGCCCTGAATTGAAGATTCTTCCCTCTATTGGAGGGTGGACGCTTGCCGATCCTTTCTTC 1047 Query 28367 -TTTCACATGCACGACGCGACCGTGCGCCAAACG-TTCATCGATTCCGTCGTGGACTTTC 28424 ||| | || || | | | | | | ||| || | | || || ||| |||| Sbjct 1048 TTTTTAGTTG-ACAAATCTA-AGAG---AACACGATTTGTGCAGTCAGTAAAGGAGTTTC 1102 Query 28425 TGCTGACCTGGAAGTTCTTCGACGGCGTCGACATCGATTGGGAGTTTCCGGGCGGCAAAG 28484 | || || ||||| |||||||| || || || |||||||||||||| || || ||||||| Sbjct 1103 TTCTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGGCAAAG 1162 Query 28485 GAGCCAATCCCGATGTCGG 28503 | || || || || |||| Sbjct 1163 GTGCTAACCCTGACCTCGG 1181 >seq22291 Length=1216 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||||| ||||| |||| ||| | | | ||||||||||| ||||||||||| | Sbjct 970 CCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 911 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || | ||| ||||||| | |||| |||||||| || || ||||| Sbjct 910 AGGGTGCGTCCATCTTCCAATTGCTTACCGGCAAAGATAAGACGCTGCTGATCAGGAGGG 851 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || |||||||| ||| |||| | ||||| | ||| | || || | | ||||| Sbjct 850 ATGCCCTCTTTGTCT-TGAATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCAC 792 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||| || ||||| |||||||||||||| Sbjct 791 TTCCAGGGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 744 Score = 114 bits (126), Expect = 1e-20 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||||| ||||| |||||||| | | | ||||||||||| |||||||||| || Sbjct 1198 CCACCTCGCAGACGCAGTACTAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGT--CTG 1141 Query 138448 ATA--GTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 ||| ||||| || || || || || |||| | |||| ||||| ||||| || || | Sbjct 1140 ATAAGGTACGTCCATCTTCCAGCTGCTTGCCGGCAAAGATAAGACGTTGTTGATCTGGGG 1081 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564 | ||||| ||||| || ||| | || | |||| | ||| | |||||| | || |||| Sbjct 1080 GAATACCCTCTTTATC-TTGAATCTTAGCCTTTACATTTTCAATGGTGTCAGACGGCTCC 1022 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || | || | || || || || || || || ||||| || ||||| Sbjct 1021 ACTTCCAGAGTTATAGTCTTGCCTGTTAGTGTCTTGACAAATATTTGCAT 972 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCT 138446 ||||| || | ||||| |||||||||| | | || ||||||||||| || || || | | Sbjct 514 CCGCCACGAAGCCGCAATACTAAATGTAGGGTAGATTCCTTTTGAATATTATAATCAGAT 455 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||||| || || |||||||| || | | | || || | |||||| || || || Sbjct 454 AAT-GTACGGCCATCTTCCAGTTGTTTTCCAGCAAAAATCAGCCTCTGTTGATCTGGGGG 396 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| |||||||| ||| ||| || | | ||| | ||||||| | || || Sbjct 395 AATACCCTCTTTGTCTTGGATCTTTGCCTTCACATTTTCAATAGTGTCGGAGGGTTCTAC 336 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||||| || || ||||| || ||||| |||||||| Sbjct 335 CTCTAAAGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 288 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||||| | ||||| || | | || || ||||| ||||||||||| Sbjct 742 CCACCTCTTAAACGAAGTACTAAGTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGAT 683 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || | ||| || || | | | || ||||| ||||| |||||||| Sbjct 682 AGTGTACGACCATCTTCTAATTGCTTGCCCGCAAAAATAAGACGTTGTTGATCCGGAGGA 623 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||||||||| |||||| ||| | | ||| | ||||| | | || || Sbjct 622 ATGCCTTCTTTGTCTTGGATTTTAGCTTTCACATTTTCAATTGTGTCAGAAGCTTCAACT 563 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||| || ||||| ||||| || ||||| Sbjct 562 TCTAAAGTAATTGTTTTTCCAGTGAGTGTTTTAACAAAGATTTGCAT 516 >seq84803 Length=1104 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || ||| | |||||||||| | || ||||| |||||||||||||| | Sbjct 362 CCACCTCTCAGACGAAGTACTAAATGTAAAGTAGATTCCTTCTGAATGTTGTAGTCTGAC 303 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || |||||||| || | | || || | ||||||||| || || Sbjct 302 AGTGTACGTCCATCTTCAAGTTGTTTTCCAGCGAAAATAAGCCTCTGTTGGTCTGGGGGA 243 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || || || ||| |||||| ||||| | ||| | ||||| | | ||| || Sbjct 242 ATCCCCTCCTTATCT-TGAATTTTTGCTTTAACATTTTCAATTGTGTCAGAAGGCTCAAC 184 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||||||||| || |||||||||||||| ||||| Sbjct 183 TTCAAGAGTAATAGTTTTACCAGTAAGCGTTTTTACAAAAATTTGCAT 136 >seq22292 Length=1070 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||||| ||||| |||||||| | | | ||||||||||| ||||||||||| Sbjct 233 CCACCTCGCAGACGCAGTACTAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGAT 174 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || || || || |||| | |||| ||||| ||||| || || || Sbjct 173 AAGGTACGTCCATCTTCCAGCTGCTTGCCGGCAAAGATAAGACGTTGTTGATCTGGGGGA 114 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| ||||| || ||| | || | |||| | ||| | |||||| | || |||||| Sbjct 113 ATACCCTCTTTATC-TTGAATCTTAGCCTTTACATTTTCAATGGTGTCAGACGGCTCCAC 55 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || || || || || ||||| || ||||| Sbjct 54 TTCCAGAGTTATAGTCTTGCCTGTTAGTGTCTTGACAAATATTTGCAT 7 >seq20505 Length=7550 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||||||||||||||| || ||||| || || ||||||||||| | | Sbjct 4585 GATTCCTTTTGAATGTTGTAGTCAGACAATGTACGTCCATCTTCTAGTTGTTTACCAGCA 4526 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | ||| || ||||| || || |||||||| || || |||||| ||||| Sbjct 4525 AAGATCAAACGTTGCTGGTCTGGTGGAATACCTTCCTTATCTTGGATTTTAGCTTTTACA 4466 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | || || | | ||||||||| | || | |||||||| || || || || Sbjct 4465 TTTTCTATAGTATCAGAGGCCTCCACCTCAAGGGTAATGGTTTTACCCGTAAGGGTCTTG 4406 Query 138601 ACAAAAATCTGCAT 138614 || ||||| ||||| Sbjct 4405 ACGAAAATTTGCAT 4392 >seq84804 Length=1020 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| | |||||| |||||||| | | |||||||| || || || ||||| | Sbjct 317 CCACCTCTTAGACGCAAGACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCTGAC 258 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || ||| || || ||||| || || | | || || | ||||| || ||||| Sbjct 257 AATGTGCGCCCATCTTCCAGTTGCTTTCCAGCGAAAATCAGTCTTTGTTGATCAGGAGGA 198 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| | |||| ||||| | ||| | ||||| | | ||||| Sbjct 197 ATGCCTTCTTTGTC-CTGAATCTTTGCTTTAACATTTTCGATTGTGTCAGAAGCTTCCAC 139 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||| || ||||| |||||||| ||||| Sbjct 138 TTCTAAGGTAATAGTTTTGCCAGTTAGTGTTTTCACAAAAATTTGCAT 91 >seq19754 Length=5595 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || || || |||||| || |||||| || || ||||| || || | Sbjct 5595 GACTCCTTCTGGATATTATAGTCGGACAATGTACGCCCATCTTCCAGTTGCTTTCCAGCG 5536 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 | || || | ||||| || ||||| || ||||||||||| ||| | |||| |||| Sbjct 5535 AAAATCAGTCTTTGTTGATCAGGAGGAATGCCTTCTTTGTC-CTGAATCTTTGCCTTAAC 5477 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | ||| | ||||| | | ||||| || | || | ||||| |||||||| ||||| Sbjct 5476 ATTTTCGATTGTGTCAGAAGCTTCCACTTCTAAGGTAATAGTTTTGCCAGTCAGTGTTTT 5417 Query 138600 TACAAAAATCTGCAT 138614 |||||||| ||||| Sbjct 5416 CACAAAAATTTGCAT 5402 >seq18397 Length=6272 Score = 82.4 bits (90), Expect = 8e-11 Identities = 91/119 (76%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 52606 TGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGC 52665 |||| |||| || || || |||||| ||||||| || || | ||||||||| || | Sbjct 2938 TGTTACAGGATGCAGTAGCCATCGAACAGGAGTTCTTAACAGACGCGCTGCCAGTGCGCC 2997 Query 52666 TGCTGGGCATGAAC-GCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCT 52723 |||| ||||||||| ||| || |||| | | ||||| ||||||||||| ||||| || Sbjct 2998 TGCTAGGCATGAACTGCGACCTC-ATGTCCAATTACATAGAGTTTGTGGCTGATCGCCT 3055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494384499655440