Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20elevatus_20bari_20[genbank_20GCA_5F900068365.1_202017- 04-25] 302,727 sequences; 364,783,738 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq50497 233 1e-56 seq22291 107 1e-18 seq19754 91.5 1e-13 seq225328 89.7 4e-13 seq84804 89.7 4e-13 seq22292 89.7 4e-13 >seq50497 Length=2916 Score = 233 bits (258), Expect = 1e-56 Identities = 848/1304 (65%), Gaps = 40/1304 (3%) Strand=Plus/Minus Query 5817 TTGCCCAAACCGGTGTTCATTGCATTTAAAAGATCACCGTTGTCCGCGTCTATTTCCCAC 5876 ||||| | ||| ||||||| ||||| | ||||||||||| || ||||| | |||||| Sbjct 1874 TTGCCGAGACCCATGTTCATGGCATTCAGTAGATCACCGTTATCAGCGTCCACTTCCCAA 1815 Query 5877 GCAAATAAACCACCCAAATTTTTGCTCACTACATACTTACCTTTTGCTACCACCGATTGA 5936 || || | |||||| | || || | |||||| ||||| ||| | | || ||| | Sbjct 1814 GCGAAGAGACCACCTAGCTTGTTATTTCTTACATATTTACCCTTTTCAATAACGGATCTA 1755 Query 5937 TCGTTGTCGTACGTAACTAAATCATTATT--ATCGT----AGACGTACGGAGATTGTGCA 5990 | || || || || || | ||| | | || || ||||||| || | ||| || Sbjct 1754 GCATTATCATAGGTTACAAGATCTCCAGTTGATGGTCTGAAGACGTAAGGGGCTTGGGCG 1695 Query 5991 ATGTTATCATA---GAATTGTACACTTTCGTCGTACCTATTTA-----CAATATCTTTAT 6042 | || || || ||| | ||||| | | | | | |||| |||| || | | Sbjct 1694 ACATTGTCGTAATGGAACTCC-CACTTGCCTTG-AGCAATTTCATTCGCAATCTCCCTGT 1637 Query 6043 AATCGATTACGCCGCTTTCCCATGTACCTTTAACGGGAGCGCTAGCTATTCCTGTAAACG 6102 | || | || ||| || ||| || ||||| || || | |||| | ||||| || | Sbjct 1636 AGTCAACAACTCCGTCTTGCCAAGTTCCTTTGACAGGTCCAGTAGCGTTGCCTGTGAAGG 1577 Query 6103 GATTATTGTTTTCG-ACTCGATGCACACCGCTCCAGCCGCGTCCATACATAGCCACACCT 6161 || | |||| |||| | || ||| || || ||||||| || ||||||||||| |||||| Sbjct 1576 GAATGTTGTCTTCGTAATC-ATGAACGCCAGTCCAGCCACGACCATACATAGCAACACCT 1518 Query 6162 ACTACTAATTTAGTCGAATCGACATTTTGATTTAACAA-TCTGTTAATAGCAAAATGGGT 6220 ||||| | || | | || || || | ||| | | ||| | | || | | Sbjct 1517 ACTACAATCTTCTTAGGATTCACTCCCTGCGCCAGCAAGTATTTTACTC-CGAAGTCAGA 1459 Query 6221 TGTGTAATTTTCGTTAACGTCCCACGAAGGAGCGTAAAGCGGTGTTTGAAAACCCAAATT 6280 ||||||| |||| || | ||||| ||| ||||| | || |||||| || | | | Sbjct 1458 TGTGTAAGTTTCCTTGGGATTCCACGCAGGCGCGTACAATGGCGTTTGATGTCCAAGAGT 1399 Query 6281 TTCCATGGACCAAGCGCCTTTAAAATCGTAGGTCATTACAAATATATAATCGAGATAGCG 6340 || | ||||| || || || || ||||| |||| | || |||| ||| | ||| Sbjct 1398 ATCATTTGACCAGGCTCCCTTGAAGTCGTAACTCATCAAGAAAATATGATCCATATAATT 1339 Query 6341 TTGCGCGTCTGTATAATCGACAACGTCGATTTTGTCGTAACCGGCACCGATAGCGCTAGT 6400 ||| || | ||| || ||||| | ||||| || | || |||| ||||| ||| Sbjct 1338 TTGAGCCTTGCCATAGTCAACAACTTGAATTTTATCCCATCCAGCACTAATAGCAGAAGT 1279 Query 6401 TAGTTGCAATCGTTTACCTCTCtttttttCCAATTTGTTGAGCATTTCGCGTAACTCCTT 6460 || || || ||||| |||| | | | | |||||| || |||| || || Sbjct 1278 TAATTCGTATTTCTTACCATTCTTAGCTGAGAGCTCATCGAGCATCTCACGTAGTTCTTT 1219 Query 6461 TAAAAGTATTGTATATGTTTTGCGATCCACTGAAGCGTTGCCCAGCGACGGGTTGGCACC 6520 | | || ||| | | ||| ||| | | || || ||||| ||||| Sbjct 1218 CATCAAACTTACATAACAATCACCATCTTCTGG---GCTACCGAGGTCAGGGTTAGCACC 1162 Query 6521 TTTACCGCCCGGAAACTCCCAATCTATGTCGACGCCGTCGAAAAATTTCCACGTTTCCAA 6580 ||| || || || ||||||||||| || || || || ||||| |||||||| ||| | Sbjct 1161 TTTGCCACCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTCCATGTTAGAAG 1102 Query 6581 AAATTCGCGCACACTATCAACAAA-CGTATTTCGTTTTTCGAC--GTCGTTTAACTGGTA 6637 ||| || || | ||||| ||| || | || || ||| ||| | | Sbjct 1101 AAACTCCTTTACTGACTGCACAAATCGTGTTC---TCTTAGATTTGTCAACTAAAAAGAA 1045 Query 6638 AAACGGATCGCTAAGCGTCCATCCGCCTATCGATGGCAATATTGTTAAATCTGGATTGTG 6697 || |||||| ||||||||| || || || || || | || | || || || ||| Sbjct 1044 GAAAGGATCGGCAAGCGTCCACCCTCCAATAGAGGGAAGAATCTTCAATTCAGGGC-GTG 986 Query 6698 GC-GCTTGATCGCCATTAACTGTCCAAAGTTTCCTTTGTACGGTTCGTTGTAGGCCTCGA 6756 | || | | |||||| || |||||||| ||||| || || ||||| | | || Sbjct 985 CTTGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTATAGGGCTCGTTCCATGAA--GA 928 Query 6757 CA--CCTTTTTGTGGTTTTTGAAGCGCTCCCCATATATCATGAATGGTTACTTTGAAATC 6814 || ||||||||||||||||| | ||| ||||| ||| || || | |||||||| || Sbjct 927 CAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTGAAGTC 868 Query 6815 TTTTCGGCCGGCGCACGATTTTTGCAACGCCTC-AAACGAACTGGGTATTTGTTGTTTAA 6873 | |||||| || || || | || | |||| || | || | || |||| Sbjct 867 CTCACGGCCGCTACAGGACCGCTGTAGTGCTTGGAAACTGCCTTCG-ATCTCTT--TTAA 811 Query 6874 GCGCATCGTTTACACCATCGCCGCCACAAATTGGTATAAACCCGTACAACAAATGTGTAA 6933 | ||| || | ||||| ||||| |||||||| ||||| ||||| | ||| || |||| Sbjct 810 ACT-ATCATTGATGCCATCACCGCCGCAAATTGGAATAAAGCCGTAGAGCAAGTGAGTAA 752 Query 6934 GATTAGGAATGGGAATTTTGTCGGCGGGATATTGTCTATCGTAAACACCCCATTCCACAA 6993 ||||||| || || || || |||| ||| ||| || ||||||||||| || | Sbjct 751 GATTAGGTATAGGTATACGATCCACGGGGAATTTCCTAGGATAGACACCCCATTCTACGA 692 Query 6994 AGTAAGCGCCCACAACATTATCGGTAATTTTTTCGAACGGTACATTGTTTTCCGACCACA 7053 |||| || |||||||| || | | ||| | |||||| ||| ||||| | | Sbjct 691 AGTAGGCACCCACAACTTTTCCAGATGTTTGCTTGAACGGCTTATTTTTTTCTCCCAATG 632 Query 7054 TATATTTTATAGGATTTAAATGCGAACCGTCTGTATCGGCCACG 7097 |||||| | |||| |||||| || || |||||||||||| Sbjct 631 TATATTCCAGAGGAGGTAAATGACTTCCATCGGTATCGGCCACG 588 >seq22291 Length=1216 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| |||||| || | ||| ||||||||| ||||| || || | Sbjct 286 CCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAA 227 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | |||| | || |||||||| || || | ||||| ||||| || ||||| | || Sbjct 226 AGAGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGA 167 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||| ||||| ||||| ||| | | | | || || | ||| || Sbjct 166 ATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACT 107 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||||||||| ||||||||||| | ||||| || ||||||||||| Sbjct 106 TCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCAT 60 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||||| ||||| || |||||||| ||||||||| || || || || | Sbjct 742 CCACCTCTTAAACGAAGTACTAAGTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGAT 683 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | || |||| || ||||| || || ||||||| | ||| || ||||||| || Sbjct 682 AGTGTACGACCATCTTCTAATTGCTTGCCCGCAAAAATAAGACGTTGTTGATCCGGAGGA 623 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||||||||| ||||| ||| | | | | |||||| | ||| || Sbjct 622 ATGCCTTCTTTGTCTTGGATTTTAGCTTTCACATTTTCAATTGTGTCAGAAGCTTCAACT 563 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || |||||||||||||| || || | ||||| || ||||| ||||| Sbjct 562 TCTAAAGTAATTGTTTTTCCAGTGAGTGTTTTAACAAAGATTTGCAT 516 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||||| ||||||||| | ||| | || || ||||| || || || || | | Sbjct 970 CCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 911 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | |||| |||| |||||||| || ||| |||| || | |||||||||||| | || Sbjct 910 AGGGTGCGTCCATCTTCCAATTGCTTACCGGCAAAGATAAGACGCTGCTGATCAGGAGGG 851 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||| |||||||| ||||| ||| | | | | || || | | |||||| Sbjct 850 ATGCCCTCTTTGTCTTGAATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACT 791 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| ||||| || || || |||| ||||| || || |||||||| Sbjct 790 TCCAGGGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 744 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| || | |||| ||| ||||| | || ||| ||||| ||||||||||| | Sbjct 514 CCGCCACGAAGCCGCAATACTAAATGTAGGGTAGATTCCTTTTGAATATTATAATCAGAT 455 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || || |||| |||| |||||| || ||||||| | | ||| ||||| | ||| Sbjct 454 AATGTACGGCCATCTTCCAGTTGTTTTCCAGCAAAAATCAGCCTCTGTTGATCTGGGGGA 395 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || |||||||| || ||| || | | | | ||||| | | ||| || Sbjct 394 ATACCCTCTTTGTCTTGGATCTTTGCCTTCACATTTTCAATAGTGTCGGAGGGTTCTACC 335 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||| || ||||| || || | ||| || || ||||||||||| Sbjct 334 TCTAAAGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 288 >seq19754 Length=5595 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| || || |||||||| || || || |||||||| || | | Sbjct 4716 CCACCCCGTAGACGCAACACTAAGTGCAAAGTAGACTCCTTCTGGATATTATAGTCAGAC 4657 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| || | ||| || ||| | ||||| | | || ||||| | || Sbjct 4656 AATGTGCGCCCATCTTCGAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGA 4597 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||| ||||| || ||| || | | | | ||| || | |||||| Sbjct 4596 ATGCCTTCCTTGTCTTGAATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGCTTCCACT 4537 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||| || || ||||| || |||||||||||||||||||| |||||| Sbjct 4536 TCCAATGTGATGGTTTTCCCAGTTAAAGTTTTTACGAAGATTTGCATG 4489 >seq225328 Length=614 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| ||||| | |||||| ||||||||| ||||| || ||||| || || | Sbjct 461 CCTCCTCGTAAACGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAG 402 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | || |||| |||| || || || | ||||| | ||| || ||||| | ||| Sbjct 401 AGAGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCTGGGGGA 342 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || |||||||| || || ||||| | | | ||||||| | ||| || Sbjct 341 ATACCCTCTTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCTGAGGGTTCAACT 282 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || || ||||| || || | || ||||| ||||||||||| Sbjct 281 TCTAATGTGATAGTTTTCCCTGTCAGTGTCTTTACAAAGATCTGCAT 235 >seq84804 Length=1020 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| | ||||| || ||||||||||| || || || |||||||| || | | Sbjct 317 CCACCTCTTAGACGCAAGACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCTGAC 258 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| |||| ||| || || | ||||| | | || ||||| | || Sbjct 257 AATGTGCGCCCATCTTCCAGTTGCTTTCCAGCGAAAATCAGTCTTTGTTGATCAGGAGGA 198 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||||||||| || ||| ||||| | | | |||||| | |||||| Sbjct 197 ATGCCTTCTTTGTCCTGAATCTTTGCTTTAACATTTTCGATTGTGTCAGAAGCTTCCACT 138 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || ||||| ||||| || |||| ||||| || || || ||||| Sbjct 137 TCTAAGGTAATAGTTTTGCCAGTTAGTGTTTTCACAAAAATTTGCAT 91 >seq22292 Length=1070 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| ||||| || ||||| ||||| ||| ||||| || ||||| ||||| | Sbjct 917 CCTCCTCGTAAACGTAGAACCAAGTGCAACGTGGACTCTTTCTGAATATTGTAATCAGAG 858 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | || |||| |||| || || || | ||||| | ||| || ||||| | ||| Sbjct 857 AGAGTACGACCATCCTCCAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCTGGGGGA 798 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || |||||||| || || ||||| | | | ||||||| | ||| || Sbjct 797 ATACCCTCTTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCTGAGGGTTCAACT 738 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || || ||||| || || | || ||||| ||||||||||| Sbjct 737 TCTAATGTGATAGTTTTCCCTGTGAGTGTCTTTACAAAGATCTGCAT 691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346087984962791