Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20elevatus_20bari_20[genbank_20GCA_5F900068365.1_202017- 04-25] 302,727 sequences; 364,783,738 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq7802 181 5e-41 >seq7802 Length=17912 Score = 181 bits (200), Expect = 5e-41 Identities = 307/442 (69%), Gaps = 2/442 (0%) Strand=Plus/Plus Query 25922 TCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTC 25981 || ||| | | |||||| | |||||| ||||| | |||||||| | ||||| |||||| Sbjct 3127 TCTACTCTTTTCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTC 3186 Query 25982 ATTTCTTCTTTTCC-GTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCA 26040 |||||||| || || ||| ||||| |||| ||| ||||| ||||| || || | ||||| Sbjct 3187 ATTTCTTCCTTACCTGTG-TTCTTCTTTAAATCCAAGAATTCAAATATGTCCGCATGCCA 3245 Query 26041 TGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCT 26100 || |||||||| || ||||| || | ||| ||||||||||||||| ||||| Sbjct 3246 AGGCTCTAAATAAATTGCAAATGCGCCGGGACGTTTGTTTCCACCTTGATCTACATATCT 3305 Query 26101 TGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCT 26160 ||||| | || | ||| |||||||||| |||| ||| |||| | || || |||| Sbjct 3306 GGCAGTATTGTTATACACTCTCAACATTGGCACTAGACCATTTGAGACCCCATTAGTGCC 3365 Query 26161 ATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCA 26220 | || | || || | ||| || || | ||| | ||| || |||||||| | Sbjct 3366 AGCTATGTAAGAACCCTGAGCTCTGATGCAATGTGTATGTAAACCTATGCCACCAGCAGA 3425 Query 26221 TTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTT 26280 ||| ||||| |||||| | | | ||||| ||||| |||| |||||||| |||| Sbjct 3426 TTTAGAAATTAATGCACATTGTTTTAAAGTATCAAAAATACCTTCAATGCTATCGTCTTT 3485 Query 26281 CATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGT 26340 ||| ||| | ||||| || || | || | | | ||| ||| || ||||| Sbjct 3486 CATAGCTATAAGGAAACAGGAGGAAAGCTGTGGCCGTGGTGTGGCTGCGGAGAACAATGT 3545 Query 26341 CGGTGTAGCATGAGTATAATAT 26362 || | ||||| ||| ||||| Sbjct 3546 AGGGCTTGCATGTGTAAAATAT 3567 Score = 116 bits (128), Expect = 2e-21 Identities = 351/529 (66%), Gaps = 16/529 (3%) Strand=Plus/Plus Query 24645 CGATATTTT--CTTTTTCTAATGTAAATTGCTTAGCTGATACTGCTGGTTTAGTTC-TAA 24701 || |||||| |||| |||| ||||| || |||| | |||||||||| || | ||| Sbjct 1884 CGTTATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAA 1943 Query 24702 GATAATACATTCCAGTTTTCAATTTCTTCTTCCAACCGTAAAAATGCATTGATGTTAGTT 24761 | || |||||||| ||||| || | | |||||| ||| ||||| || || || |||| Sbjct 1944 G-TAGTACATTCCTGTTTTTAAACCCATTTTCCAAGCGTGGAAATGAATCGACGTAAGTT 2002 Query 24762 TTGCAATGTTTGCTGATTCTAAAAACAAGTTCATCGATTGAGCTTGGCAAACAAAACGTT 24821 || || ||| | | | | | | ||| | |||||| |||| | |||| | Sbjct 2003 TTCCATAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATAAAAGCTC 2062 Query 24822 GTCTATCTGCAGCTAAGTCAATGATCGTTTTCATCGATATATCGTAAGCTGTTTTGTATC 24881 |||||| || || | | ||| ||||||| || || || | | |||||||| Sbjct 2063 CTCTATCAGCTGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACA 2122 Query 24882 TCTCTTTTATCTCAGTTGGAATACTTGCAATATTTTGAACTGATCCATT-TTCTCTC-AA 24939 ||| |||| || | ||||| || |||| | ||| | |||||||| || | | || Sbjct 2123 AATCTCTTATTTCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAA 2182 Query 24940 TA-GATTCAATCTCATATTCGGTGTCCAAAGATTAATTTTT-TCAAGATCTCTAATCAAG 24997 || | || | |||||| ||| | || | |||| ||| | | | Sbjct 2183 TAAGGTT---TTTCATATCTTCATCCCACAAATCAGCCCGAGTCAA-ATCAGTCAGAAGA 2238 Query 24998 TGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTCTTATTGATAA--GTTTGAAG 25055 || | || | | | |||||||||||| || |||||||| ||| ||| ||||| | Sbjct 2239 TGATGGTTCACTACAGGAAATTCTCCAGATAAGACTCTTCT--TTGGTAAATATTTGATG 2296 Query 25056 TGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTA 25115 | || ||||||||| ||||| | || || | ||||| | |||||| || || ||||| Sbjct 2297 TAAAGGGTTCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAG 2356 Query 25116 ATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTTT 25164 ||||| ||||| ||||| | |||||||| ||| | |||| || ||| Sbjct 2357 GAGCTATCAATAGAGAATTGCGCAAACCATGTTTTGCTATCTTTTCTTT 2405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252106412636525