Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20elevatus_20bari_20[genbank_20GCA_5F900068365.1_202017- 04-25] 302,727 sequences; 364,783,738 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq5489 170 6e-37 seq182296 134 4e-26 seq7802 132 1e-25 seq9228 86.0 2e-11 >seq5489 Length=17120 Score = 170 bits (188), Expect = 6e-37 Identities = 341/497 (69%), Gaps = 10/497 (2%) Strand=Plus/Plus Query 288849 CCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGC 288908 ||||||||| ||||||| | ||| ||| |||||| || || ||||||| || || Sbjct 15611 CCTATCAAATCTACCAGGTCTTAATAAGGCTTTGTCTAAAATGTCCACTCTGTTAGTGGC 15670 Query 288909 TGCCAATACAACAATAGATTCGGT-TTGC-TTAAATCCATCCATACTTGTTAAAATTTGA 288966 || ||||| |||| | || | | ||| || || |||||||| || || ||| Sbjct 15671 AGCTAATACTACAACA--TTGGTTGTTGTATTGAAACCATCCATTTCCACTAGAAGCTGA 15728 Query 288967 TTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttt 289026 ||||| || | ||| ||| || ||||| || | | | || ||| ||||| Sbjct 15729 TTAAGAGTATTTTCTTGTTCTGAATG---ACCTCCAAAA-CTTCTGCCTC-CTC-TTTTT 15782 Query 289027 ttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 ||||||||||||| ||||| ||||| || | | ||| |||| || || | || ||| Sbjct 15783 CTACCAACAGCATCTATTTCATCAATAAATAATATACAGGGAGCATGTTTCCGTGCCATT 15842 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 | || | || || || | || | |||| ||||||| ||||||||| ||| || ||| Sbjct 15843 GAGAACATATCCCTGACCCTAGAGGGACCAACACCAACAAACATTTCTAAAAACTCTGAA 15902 Query 289147 GCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | |||||| ||| || | ||||| || || || ||| ||| | || ||||| || Sbjct 15903 CCTGATACTGTAATAAAGGGAACATTAGCCTCTCCAGCTGTTGCTTTAGCTAGAAGAGTT 15962 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGAC 289266 ||||| |||||||| ||||| ||||| ||||||| || | ||| || || | Sbjct 15963 TTACCAGTTCCAGGGGGTCCTGTTAATAAGGCTCCCTTAGGAATTTTAGCTCCTAAATCA 16022 Query 289267 TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326 |||||| || |||| |||| || || | |||| |||| || |||| ||| || || Sbjct 16023 ATATATTGCTGAGGGTTCTTCAAGAAATTGACAAATTCCATAATTTCAATTTTAGCTTCC 16082 Query 289327 TCACATCCTGCTACATC 289343 ||||| || || ||||| Sbjct 16083 TCACAACCAGCAACATC 16099 >seq182296 Length=3944 Score = 134 bits (148), Expect = 4e-26 Identities = 210/295 (71%), Gaps = 8/295 (3%) Strand=Plus/Plus Query 302553 ATCATAACCAATCATAA-TGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAG 302611 ||||||| | ||||| || || ||||| ||| ||||||||||||||||| ||||||| Sbjct 1680 ATCATAATGTACCATAACTGACT-CCATAGCCTTTATTAAACGACGCTGAATGTAACCAG 1738 Query 302612 TTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGA 302671 || || ||||||||||| |||||||| ||||| ||||||| |||||||| ||||| Sbjct 1739 TTTCAGCAGTTTTTACAGCAGTATCAATGAGACCTTCACGACCTCCCATAGCGTGGAAAT 1798 Query 302672 ATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGG 302731 | | ||| ||| | || ||| | || | || |||||||| | | || | Sbjct 1799 AAAACTCAGAGGGTGTCAAGCCAGCAAGGTAAGAATTTTCGACGAAACCTCTAGATTCTG 1858 Query 302732 G--CG-AATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGA 302788 | || ||||||| ||| | || ||||||| || || || | | ||| | || | Sbjct 1859 GACCGTAATCGTC---TTTGATGAAATGTGGCAATGTTCTTTTACGAAAACCGAACGGAA 1915 Query 302789 TACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 |||||||||| ||||||||||| || || | || | ||| | ||| || || || Sbjct 1916 TACGCTTTCCTTCAACGTTCTGTTGCCCTACACAAGCAATAACCTGTGAGATGTT 1970 >seq7802 Length=17912 Score = 132 bits (146), Expect = 1e-25 Identities = 576/897 (64%), Gaps = 32/897 (4%) Strand=Plus/Plus Query 155475 GGGTAAAAATTCACATCAATAATGTTATTTAAATTT---GTAACCAATACCTTGGTTACG 155531 || |||||||| |||||||||| || ||||||||| || || ||| ||| || | Sbjct 2698 GGATAAAAATTAACATCAATAACTTTGTTTAAATTTTGAGTTAC-AAT--CTTTGTGATT 2754 Query 155532 TCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACATACCAAGACCAATA 155591 ||| |||||| | | | |||| | |||| ||| |||||||| ||| | || Sbjct 2755 TCTTTTAATTTTTTAAAATTAAATCTGTTATTTTCA---ACAAACATGTTAAGTGCTATG 2811 Query 155592 GACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAGCAC 155651 || || || || || || || || | || |||||| |||| |||| ||| Sbjct 2812 GAAGCAAGGTTGCACACTGCCACTTCATCTTCTGAAGTGTATTGCACAACCTCAGTGCAA 2871 Query 155652 AGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCC 155711 || || || || || ||||| | ||| || || ||| || ||||||||||||||| Sbjct 2872 AGATTGCTACATTTAATAGTGCCAAGATTTTTTTGATTACTCTTTCTGTTACAAGCATCC 2931 Query 155712 TTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAAT---CTTTAGCCAG 155768 || || | |||||||| || || ||||||| || || || | ||| ||| ||| Sbjct 2932 TTATACAACATGTATGGTGTACCAGTCTCCACTTGGGCTTCTATAATTGACTT---CCAT 2988 Query 155769 AGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGC 155828 | || | || | | ||| || | ||| ||| |||||||| |||| | Sbjct 2989 AACTCTTGAGCTCTGACTTGTTTTATAAATCGTTTTTCTTCTTCATATTTGGTATATA-- 3046 Query 155829 GTTCGGTAA--TCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACA 155886 |||| || ||||| || | || ||| || ||||| || | || || || | | Sbjct 3047 GTTCTTCAAATTCCTCTCCAAAGCAGTCAGCGAGGCCAGGACAGTCATGAGGACACATGA 3106 Query 155887 GCGACCAAATTTTATTACCGAT--TACACGCTCCATAAATACATCACTCGCCCAAATAGC 155944 | ||||| || || || | ||| | | |||||| | ||| ||| | ||| Sbjct 3107 GACTCCAAACTTCAT--CCTTTTCTACTCTTTTCATAAACAGATCTGGTATCCATAAAGC 3164 Query 155945 ATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCC-GTGATTCTTCCGTAGCTCTAAGA 156003 ||| || || || || || | || || | || ||| |||||| || || |||| Sbjct 3165 ATAAAACAGTTCTCTAGCTCTCATTTCTTCCTTACCTGTG-TTCTTCTTTAAATCCAAGA 3223 Query 156004 ATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACC---ATTCCTCT 156060 |||| || || | ||| ||||| | ||| || ||||| || | | | Sbjct 3224 ATTCAAATATGTCCGCATGCCAAGGCTCTAAATAAATTGCAAATGCGCCGGGACGTTTGT 3283 Query 156061 TGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATAC 156120 | ||||| ||||||||||| | ||||| || || | || | | ||| || | | || Sbjct 3284 TTCCACCTTGATCTACATATCTGGCAGTATTGTTATACACTCTCAACATTGGCACTAGAC 3343 Query 156121 CATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACAT--TATGAAT 156178 |||| || ||||| || || || | ||||| ||||| || ||| | Sbjct 3344 CATTTGAGACCCCATTAGTGCCAGCTATGTAAGAACC--CTGAGCTCTGATGCAATGTGT 3401 Query 156179 ATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAA 156238 ||||| || || ||||| | ||||||||||| || |||| |||| ||||| || Sbjct 3402 ATGTAAACCTATGCCACCAGCAGATTTAGAAATTAATGCACATTGTTTTAAAGTATCAAA 3461 Query 156239 AATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCG 156298 |||||||||||| ||| |||| ||| | || || | || || | || || || Sbjct 3462 AATACCTTCAATGCTATCGTCTTTCATAGCTATAAGGAAACAGGAGGAAAGCTGTGGCCG 3521 Query 156299 TGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACAT 156355 |||||| | ||| ||| | |||||| ||||||| ||||||| || | ||||| Sbjct 3522 TGGTGTGGCTGCGGAGAACAATGTAGGGCTTGCATGTGTAAAATATTTCTCTGACAT 3578 >seq9228 Length=8307 Score = 86.0 bits (94), Expect = 2e-11 Identities = 109/145 (75%), Gaps = 4/145 (3%) Strand=Plus/Plus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 || ||||||||| || || ||||||||||| || ||||| || ||| | | || || Sbjct 538 ATTGTCATACGAGAAGGGATGGCATGGGGATTAATAATGATATCTGGTGTTAAGCCCTC- 596 Query 251905 GCA-GTGAAGGGCATATCCTTTTCCTCAATAATGT-TTCCAATAGTTCCCTTTTGTCCGT 251962 ||| || || |||||||| | || || ||| || ||||| ||||| ||||| |||| Sbjct 597 GCATGTAAACGGCATATCTTCTTG-TCGATACTGGATTCCACAGGTTCCTTTTTGACCGT 655 Query 251963 GACGAGAACTGAACTTATCACCAAT 251987 |||||||| |||||||| ||||| Sbjct 656 GACGAGAAGCAAACTTATCTCCAAT 680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1466108876252999