Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20elevatus_20bari_20[genbank_20GCA_5F900068365.1_202017- 04-25] 302,727 sequences; 364,783,738 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq9228 100 4e-16 seq182296 82.4 1e-10 >seq9228 Length=8307 Score = 100 bits (110), Expect = 4e-16 Identities = 143/195 (73%), Gaps = 10/195 (5%) Strand=Plus/Minus Query 192926 AACGGAAACAGTATCTCATACATTAAATTATCCACAAAAACCCCTTGTTACCACA-GATA 192984 || ||| ||| || | ||| | | |||||||||| || ||||| || || ||| ||| Sbjct 1242 AATGGATACATTAGCCCATGTACTCTATTATCCACATAAGCCCCTGGTCACAACACGATC 1183 Query 192985 T-TGCAAAATTTAATAAATTAGACGATTATCCAAATGGTATTAATGCTATTGTTGCTATA 193043 | || || ||||| | ||||| || | || |||||| ||| |||||||||| || Sbjct 1182 TATGGAATATTTACGAT-TTAGA-GAGTTGCCTGCTGGTATCAATTCTATTGTTGCAATT 1125 Query 193044 GCTTGCTATACTGGTTATAATCAAGAAGACAGTATTATTTTAAATAAAGCTTC---TATT 193100 || |||||||| || ||||||||||| ||| | ||||||||| ||||| | || Sbjct 1124 TTATGTTATACTGGATACAATCAAGAAGATAGTGTCATTTTAAAT---GCTTCAGCTGTT 1068 Query 193101 GAAAGAGGATTATTT 193115 ||||||||||| ||| Sbjct 1067 GAAAGAGGATTCTTT 1053 >seq182296 Length=3944 Score = 82.4 bits (90), Expect = 1e-10 Identities = 85/109 (78%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 51957 ACATTTAAAATGAATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAA 52016 |||||| ||||||||| | ||| |||| |||||||||||||| || || ||| Sbjct 2867 ACATTTCGTATGAATTTGAGTTGCACTTCGCCATACAATGCTGATTTTGACGGCGACGAA 2808 Query 52017 ATGAATTTACATGTTCCTCAATCATATGG-AGCTACTGCTGAATTACAA 52064 |||||||||||||| |||||||| ||||| | || ||||||| || || Sbjct 2807 ATGAATTTACATGTACCTCAATC-TATGGAAACTCGTGCTGAAGTAGAA 2760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632774032383560