Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20elevatus_20bari_20[genbank_20GCA_5F900068365.1_202017- 04-25] 302,727 sequences; 364,783,738 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq8214 102 1e-16 seq40411 93.3 8e-14 seq128380 87.8 3e-12 >seq8214 Length=8124 Score = 102 bits (112), Expect = 1e-16 Identities = 156/216 (72%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 143094 GGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATATAAATAAACCTCTT 143153 |||||||| || |||||| | |||| || ||| |||| ||||| | || || ||| Sbjct 7251 GGTATATGTGACAATTTATTGACATGTACAGTGCGAGCGTGGGACTTCTCAAAGCCACTT 7192 Query 143154 ATTTTTTGTCCCGCTATGAATAGCCTTATGTGGGAACATCCTATTACAGAAAAACATATA 143213 | || ||||| || ||||| | ||||||||||||||||||||| ||||| ||| Sbjct 7191 GTATTCTGTCCTGCAATGAACACTAGAATGTGGGAACATCCTATTACATCTAAACAAATA 7132 Query 143214 GATGCTTTAAAACATATGGG-TTTCATAGAAATAGAATGCATAGaaaaaaaaC--TAGCC 143270 |||| |||||| || ||| ||||| |||||| | || | || ||||| || Sbjct 7131 GATGTTTTAAAGGATTGGGGCTTTCA-AGAAAT-TCCTCCA-ATAAGTAAAACTTTAATG 7075 Query 143271 TGCGGAGACATAGGAAATGGTGCTATGGCAGAAGTT 143306 || ||||| | ||| ||||| ||||||||||||| Sbjct 7074 TGTGGAGATACAGGCGTTGGTGGTATGGCAGAAGTT 7039 >seq40411 Length=4262 Score = 93.3 bits (102), Expect = 8e-14 Identities = 107/143 (75%), Gaps = 6/143 (4%) Strand=Plus/Plus Query 182419 CAGGTAGACGCTCACAATATAGTACCTTGTTGGGAAGCTTCTGACAAAGAAGAATACGGT 182478 |||||||| ||||||||| | || || ||||||| || ||||| ||| | ||||| Sbjct 917 CAGGTAGATGCTCACAATGTGGTGCCATGTTGGGTGGCCTCTGATAAACAGGAATATTCA 976 Query 182479 GCAAGAACTTTAAGAAAAAAGATATTTGATAAGTTATATGAATATATGACAGAATTTCCT 182538 |||||||| ||||||| || || | ||| ||| |||||||| | |||||||||||| Sbjct 977 GCAAGAACAATAAGAAATAAAATCAATTCTAAATTAGATGAATATCTCACAGAATTTCCT 1036 Query 182539 ---GTTATACGTAAACACCCATA 182558 ||||| |||||| || || Sbjct 1037 CCAGTTAT---TAAACATCCTTA 1056 >seq128380 Length=670 Score = 87.8 bits (96), Expect = 3e-12 Identities = 103/140 (74%), Gaps = 11/140 (8%) Strand=Plus/Minus Query 81643 CAGAGTAAATTCCTTCTGTATATTATAATCAGATAGAG----------TTCTA-CAGTCT 81691 || |||| |||||||||| ||||| ||||||||||| | ||||| | | | Sbjct 279 CAAAGTAGATTCCTTCTGAATATTGTAATCAGATAGTGTGCGTCCATCTTCTAGCTGCTT 220 Query 81692 TCTAACAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGC 81751 || | |||| || |||||||| ||| |||| | ||| | || ||||| ||||| || || Sbjct 219 TCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGAATTCCCTCTTTATCCTGAATTTTCGC 160 Query 81752 TTTTATATTTTCAATCGTAT 81771 ||| | ||||||||| |||| Sbjct 159 TTTAACATTTTCAATTGTAT 140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899992612970720