Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20elevatus_20bari_20[genbank_20GCA_5F900068365.1_202017- 04-25] 302,727 sequences; 364,783,738 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq18397 93.3 3e-14 seq9228 93.3 3e-14 seq117411 84.2 2e-11 >seq18397 Length=6272 Score = 93.3 bits (102), Expect = 3e-14 Identities = 140/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 43796 GACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTAT--ATCTTTGGTTT 43853 ||||||||| ||||| |||||||| || ||||||||||| | | | || | Sbjct 448 GACTTAGCAGATTGGGAGACATTAAAAGATTGTGAGAAACATTTTATCAAGCAT--GTCT 505 Query 43854 TGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGC 43913 | || || ||||| || || || || || ||||| || ||||| || || | | Sbjct 506 TAGCATTCTTTGCAGCTTCTGATGGTATTGTTAATGAGAACTTGGTGGAGCGTTTCTCAC 565 Query 43914 AAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973 |||| |||||| | | ||||| | || || ||||| ||||||||||| || |||||| Sbjct 566 AAGAGGTTCAAGTGACTGAAGCCAGGTGCTTCTATGGTTTTCAAATTGCTATGGAAAATG 625 Query 43974 TTCATTCGGAAATGTAC 43990 ||||||| || |||||| Sbjct 626 TTCATTCAGAGATGTAC 642 >seq9228 Length=8307 Score = 93.3 bits (102), Expect = 3e-14 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 115031 AATGGTCATACGTGAAGGAAAAGCATGCGGATTAATAATCAAGTCTGGCACTAACCCGTC 115090 ||| |||||||| ||||| | ||||| ||||||||||| | ||||| ||| || || Sbjct 537 AATTGTCATACGAGAAGGGATGGCATGGGGATTAATAATGATATCTGGTGTTAAGCCCTC 596 Query 115091 GGCTGTGAACGGCATGTCGTGCTGATCG-TACATCATTCCACAAGTTCCTTTTTGAGCGG 115149 | ||| |||||||| || | || ||| ||| |||||||| |||||||||||| || Sbjct 597 GCATGTAAACGGCATATC-TTCTTGTCGATACTGGATTCCACAGGTTCCTTTTTGACCGT 655 Query 115150 TAAACGATGCAAATTTATCACCAAT 115174 | || ||||| ||||| ||||| Sbjct 656 GACGAGAAGCAAACTTATCTCCAAT 680 >seq117411 Length=3539 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 |||||||||||||||||||| |||| || | |||||||| ||| || |||| |||| Sbjct 389 CCCAAAATTGTAAATGGTCCACAAATTTTGGACAAATATGTCGGTGAAAGTGAAGCAAAT 448 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACG 19529 | | | ||||||||||| || ||||||||| | ||||| Sbjct 449 ATTAGGAGATTGTTTGCTGATGCCGAAGAAGAAGAGAAACG 489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395989591925635