Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20elevatus_20bari_20[genbank_20GCA_5F900068365.1_202017- 04-25] 302,727 sequences; 364,783,738 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq84803 134 9e-27 seq22291 118 7e-22 seq84804 114 8e-21 seq19754 104 1e-17 seq40423 100 2e-16 seq20505 100 2e-16 seq22292 95.1 8e-15 seq225328 86.0 4e-12 >seq84803 Length=1104 Score = 134 bits (148), Expect = 9e-27 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | || ||||| | ||| ||||| |||||||| || ||||| Sbjct 362 CCACCTCTCAGACGAAGTACTAAATGTAAAGTAGATTCCTTCTGAATGTTGTAGTCTGAC 303 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | |||||||||||||| || || || || | | ||||||||| || || Sbjct 302 AGTGTACGTCCATCTTCAAGTTGTTTTCCAGCGAAAATAAGCCTCTGTTGGTCTGGGGGA 243 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||| ||| ||| ||||| |||||| | ||||||||| ||| || Sbjct 242 ATCCCCTCCTTATCT-TGAATTTTTGCTTTAACATTTTCAATTGTGTCAGAAGGCTCAAC 184 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || |||||||| || | |||||| |||||||| ||||| Sbjct 183 TTCAAGAGTAATAGTTTTACCAGTAAGCGTTTTTACAAAAATTTGCAT 136 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||||| || || || | ||| ||||||||||| ||||| ||||| Sbjct 134 CCACCTCTTAGACGCAGAACTAAGTGCAAAGTAGATTCCTTTTGAATATTATAGTCTGAC 75 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| ||| | ||||| || ||||| || || || || | | ||||||||| || || Sbjct 74 AATGTGCGCCCATCTTCTAGCTGTTTGCCAGCGAAAATCAGCCTCTGTTGGTCTGGAGGA 15 Query 34600 ACTCCCTCCTTGTC 34613 | || |||||||| Sbjct 14 ATACCTTCCTTGTC 1 Score = 82.4 bits (90), Expect = 5e-11 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 || || || || ||||| ||||| | ||| ||| | ||||| ||||| || ||||| || Sbjct 554 TCTTTCTGGATATTATAGTCTGACAATGTGCGCCCATCTTCCAGTTGCTTTCCGGCGAAA 495 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || | | ||||| || || || | || ||||||||| |||||| | ||||| | Sbjct 494 ATCAGTCTTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTTT-GCCTTAACATT 436 Query 34636 AAA-ATTGTGTCTTC-GCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 || || || ||| || ||||||| || || ||||| || || || ||||||| Sbjct 435 TTCGATAGTATCAGAAGCT-TCTACTTCCAAAGTAATAGTTTTGCCAGTCAATGTTTTCA 377 Query 34694 CAAAAATCTGCAT 34706 ||||||| ||||| Sbjct 376 CAAAAATTTGCAT 364 >seq22291 Length=1216 Score = 118 bits (130), Expect = 7e-22 Identities = 168/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||||||||| ||||| || ||||| || |||||||| || || || ||| Sbjct 286 CCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAA 227 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| | ||| || || || || || ||||| ||||| || || || Sbjct 226 AGAGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGA 167 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| ||| ||| | ||| || | ||| || || || || Sbjct 166 ATGCCTTCCTTGTCT-TGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAAC 108 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT 34712 ||||| || || |||||||| || | ||||||||||| |||||||| ||||| Sbjct 107 TTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTTGAT 54 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||||| || | ||| || || ||||||||| ||||| || || || Sbjct 970 CCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 911 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| | ||| ||||||||||| || | |||||| || || || || Sbjct 910 AGGGTGCGTCCATCTTCCAATTGCTTACCGGCAAAGATAAGACGCTGCTGATCAGGAGGG 851 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTG-TTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||||| |||||| ||| ||| | ||||| | ||| || || | ||||| Sbjct 850 ATGCCCTCTTTGTCT-TGAATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCAC 792 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||| || || || || |||| ||||| |||||||||||||| Sbjct 791 TTCCAGGGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 744 Score = 104 bits (114), Expect = 1e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||| ||||| || ||||| || || ||||||||||| |||||||| || Sbjct 514 CCGCCACGAAGCCGCAATACTAAATGTAGGGTAGATTCCTTTTGAATATTATAATCAGAT 455 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | ||||| |||||||| || ||||| || | | |||||| || || || Sbjct 454 AATGTACGGCCATCTTCCAGTTGTTTTCCAGCAAAAATCAGCCTCTGTTGATCTGGGGGA 395 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||||| |||||| ||||||| || | | ||| ||||| | || || Sbjct 394 ATACCCTCTTTGTCTTGGATCTTTGCCTTCACATTTTCAATAGTGTCGGAGGGTTCTACC 335 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || ||||| || || | || || ||||| |||||||| Sbjct 334 TCTAAAGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 288 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||||| || ||||| || || ||||||||| ||||| || ||||| Sbjct 1198 CCACCTCGCAGACGCAGTACTAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCTGAT 1139 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| || || || |||||||| || | ||| ||||| || || || Sbjct 1138 AAGGTACGTCCATCTTCCAGCTGCTTGCCGGCAAAGATAAGACGTTGTTGATCTGGGGGA 1079 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||||| || ||| ||||| |||| | ||| ||||| ||||||| Sbjct 1078 ATACCCTCTTTATCTTGAATCTTAGCCTTTACATTTTCAATGGTGTCAGACGGCTCCACT 1019 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||||| || || || |||| || || ||||| || ||||| Sbjct 1018 TCCAGAGTTATAGTCTTGCCTGTTAGTGTCTTGACAAATATTTGCAT 972 >seq84804 Length=1020 Score = 114 bits (126), Expect = 8e-21 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| |||||||| || ||||| | ||| |||||| || || ||||| ||||| Sbjct 317 CCACCTCTTAGACGCAAGACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCTGAC 258 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| ||| | ||||| ||||| || || || || || | | ||||| || || || Sbjct 257 AATGTGCGCCCATCTTCCAGTTGCTTTCCAGCGAAAATCAGTCTTTGTTGATCAGGAGGA 198 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTC-GCTCTCCA 34657 | || || ||||| |||||| | |||||| | |||||||| ||| |||| Sbjct 197 ATGCCTTCTTTGTCCTGAATCTTT-GCTTTAACATTTTCGATTGTGTCAGAAGCT-TCCA 140 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | ||| || ||||| || |||| |||||||||||||| ||||| Sbjct 139 CTTCTAAGGTAATAGTTTTGCCAGTTAGTGTTTTCACAAAAATTTGCAT 91 >seq19754 Length=5595 Score = 104 bits (114), Expect = 1e-17 Identities = 159/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||||||| || || | ||| |||||| || || ||||| || || | ||| ||| Sbjct 4707 AGACGCAACACTAAGTGCAAAGTAGACTCCTTCTGGATATTATAGTCAGACAATGTGCGC 4648 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| ||||| || ||||| || || | | ||||| || || || | || ||| Sbjct 4647 CCATCTTCGAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGAATGCCTTCC 4588 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTC-TTCGCTCTCCACTTCCACGGT 34667 |||||| |||||| |||| | ||||| || ||| |||||||||| || Sbjct 4587 TTGTCTTGAATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGCT-TCCACTTCCAATGT 4529 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 || ||||| || ||||| ||||| || || || |||||| ||| Sbjct 4528 GATGGTTTTCCCAGTTAAAGTTTTTACGAAGATTTGCATGATGA 4485 >seq40423 Length=5538 Score = 100 bits (110), Expect = 2e-16 Identities = 127/173 (73%), Gaps = 4/173 (2%) Strand=Plus/Plus Query 46826 GGATGGCCCGTCAC--TTTTATTACACCCGAAGTGATGGCACGTAACGGATTTTATTATC 46883 |||||||||||||| ||||||| ||||||| | || | || || || ||||||| Sbjct 1166 GGATGGCCCGTCACATTTTTATT--ACCCGAATCACTCGCGAGGAATGGCTTCTATTATC 1223 Query 46884 TTGGAAGAGGTGATGAAGTTCGATGCGCCTTTTGCAAGGTTGAGATCATGCGTTGGGAAG 46943 | || | || |||||||| || ||||| ||||| || || || || ||| |||| | Sbjct 1224 TGGGCCGCGGCGATGAAGTACGCTGCGCGTTTTGTAAAGTAGAAATTATGAAATGGGTTG 1283 Query 46944 AGGGTGATGATCCTGCCGAAGACCATAAACGTTGGGCTCCTCAGTGTCCGTTC 46996 ||| |||||||| ||| | ||||| | || ||||| || ||||| || ||| Sbjct 1284 CGGGCGATGATCCCGCCAAGGACCACCAGCGCTGGGCGCCCCAGTGCCCCTTC 1336 >seq20505 Length=7550 Score = 100 bits (110), Expect = 2e-16 Identities = 163/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 34472 AATCGTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTAT 34531 ||| || || || | ||| || | ||| | ||| | ||| |||||||||||||| | Sbjct 4626 AATAGTTACCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGT 4567 Query 34532 AATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGT 34591 | || || | ||| || | ||||| ||||||||||| ||||| || ||||| || |||| Sbjct 4566 AGTCAGACAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGT 4507 Query 34592 CCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGC 34651 | || || | || ||||| ||| ||| || ||||| | || || || | Sbjct 4506 CTGGTGGAATACCTTCCTTATCTTGGATTTTAGCTTTTACATTTTCTATAGTATCAGAGG 4447 Query 34652 TCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || | ||| || |||||||| || | || || || ||||| ||||| Sbjct 4446 CCTCCACCTCAAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCAT 4392 >seq22292 Length=1070 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||||| || ||||| || || ||||||||| ||||| || || || Sbjct 233 CCACCTCGCAGACGCAGTACTAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGAT 174 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| || || || |||||||| || | ||| ||||| || || || Sbjct 173 AAGGTACGTCCATCTTCCAGCTGCTTGCCGGCAAAGATAAGACGTTGTTGATCTGGGGGA 114 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||||| || ||| ||||| |||| | ||| ||||| ||||||| Sbjct 113 ATACCCTCTTTATCTTGAATCTTAGCCTTTACATTTTCAATGGTGTCAGACGGCTCCACT 54 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||||| || || || |||| || || ||||| || ||||| Sbjct 53 TCCAGAGTTATAGTCTTGCCTGTTAGTGTCTTGACAAATATTTGCAT 7 Score = 87.8 bits (96), Expect = 1e-12 Identities = 157/222 (71%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||| || || || || ||| |||||||| || ||||| || | || || Sbjct 452 AGACGAAGCACTAAGTGCAGGGTTGACTCTTTTTGAATATTGTAATCAGACAAAGTGCGA 393 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||| || || ||||| || | |||||||||||| || || | || ||| Sbjct 392 CCATCTTCCAATTGCTTTCCAGCAAAAATGAGACGCTGTTGGTCTGGGGGGATGCCTTCC 333 Query 34609 TTGT-CTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC--TTCGCTCTCCACTTCCAC 34664 || | |||| || ||| | ||| || | |||||||| | | ||| ||||||| Sbjct 332 TTATCCTGT-AT-TTTAGCTTTCACATTCTCGATTGTGTCAGATGGTTCT--ACTTCCAG 277 Query 34665 GGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| || || || || || || ||||| ||||| || ||||| Sbjct 276 GGTAATGGTCTTTCCAGTCAATGTTTTGACAAATATTTGCAT 235 >seq225328 Length=614 Score = 86.0 bits (94), Expect = 4e-12 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||| | ||||| || || || ||| || ||||| || ||||| || Sbjct 233 CCTCCTCGGAGACGGAGTACCAAGTGCAGGGTTGACTCTTTCTGAATATTGTAATCAGAC 174 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | ||| || || ||||| || | |||||||||||| || || Sbjct 173 AAAGTGCGACCATCTTCCAATTGCTTTCCAGCAAAAATGAGACGCTGTTGGTCTGGGGGG 114 Query 34600 ACTCCCTCCTTGT-CTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC--TTCGCTCTC 34655 | |||||||| | |||| || ||| | ||| || | ||||| || | | ||| Sbjct 113 ATGCCCTCCTTATCCTGT-AT-TTTAGCTTTGACATTCTCGATTGTATCAGATGGTTCT- 57 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||||| ||| || || || || || || ||||| ||||| || ||||| Sbjct 56 -ACTTCCAGGGTAATAGTCTTTCCAGTCAATGTTTTGACAAATATTTGCAT 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 313568409763391