Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20elevatus_20bari_20[genbank_20GCA_5F900068365.1_202017- 04-25] 302,727 sequences; 364,783,738 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq22291 107 1e-18 seq84804 102 6e-17 seq20505 86.0 4e-12 >seq22291 Length=1216 Score = 107 bits (118), Expect = 1e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 |||||||| || ||||||||||| ||||| || ||| ||||| | || || ||| Sbjct 57 AAAATGCAGATCTTTGTGAAAACACTTACGGGTAAAACCATTACTTTGGAAGTTGAACCT 116 Query 27847 ACCG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| || || | ||| || ||| ||||| ||||| ||||| |||| | Sbjct 117 TCCGATACTATTGAAAAT--GTAAAAGCCAAAATTCAAGACAAGGAAGGCATTCCTCCAG 174 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||||| || ||||| || ||||| |||||||| |||| ||||| | || || | Sbjct 175 ATCAACAACGTTTGATTTTCGCTGGAAAGCAATTGGAAGACGGACGCACTCTTTCTGACT 234 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| || |||||||| ||| | || ||||| |||||| | ||||| || Sbjct 235 ACAATATTCAAAAAGAATCTACTCTTCACTTGGTATTGCGTCTTCGTGGTGG 286 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| ||||| || ||||| || ||||| | || || ||| | | Sbjct 744 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAGACCATTACCCTGGAAGTGGAACCCTCT 803 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| || ||| ||||| |||||||| || | || || | Sbjct 804 GATACTATTGAAAAT--GTAAAAGCTAAAATTCAAGACAAAGAGGGCATCCCTCCTGATC 861 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || |||||||| || |||||||| || | ||||| | |||| || |||| Sbjct 862 AGCAGCGTCTTATCTTTGCCGGTAAGCAATTGGAAGATGGACGCACCCTGTCTGACTACA 921 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| || | ||| | || ||||| |||| || || Sbjct 922 ACATCCAAAAGGAGTCTACCCTTCATCTAGTACTGCGTCTGCGAGGTGG 970 Score = 86.0 bits (94), Expect = 4e-12 Identities = 152/220 (69%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| ||||| || ||||| ||| ||||| | || || ||| | Sbjct 516 ATGCAAATCTTTGTTAAAACACTCACTGGAAAAACAATTACTTTAGAAGTTGAAGCTTCT 575 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| || ||| ||||| ||||||||||| |||| ||| | Sbjct 576 GACACAATTGAAAAT--GTGAAAGCTAAAATCCAAGACAAAGAAGGCATTCCTCCGGATC 633 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| | |||||||| || || ||||| || || | || | | || || |||| Sbjct 634 AACAACGTCTTATTTTTGCGGGCAAGCAATTAGAAGATGGTCGTACACTATCTGACTACA 693 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTT 28007 ||||||||||||| |||||||| || || | ||||| Sbjct 694 ACATCCAAAAAGAATCTACTTTGCACTTAGTACTTCGTTT 733 >seq84804 Length=1020 Score = 102 bits (112), Expect = 6e-17 Identities = 155/221 (70%), Gaps = 10/221 (5%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||||||||| || ||||| ||| |||||| | || || ||| | Sbjct 91 ATGCAAATTTTTGTGAAAACACTAACTGGCAAAACTATTACCTTAGAAGTGGAAGCTTCT 150 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| ||||||| || ||| ||| || ||||||||||| |||| | Sbjct 151 GAC-----ACAATCGAAAATGTTAAAGCAAAGATTCAGGACAAAGAAGGCATTCCTCCTG 205 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||| | | ||||| || ||||| ||| |||| || | |||| ||||| || | Sbjct 206 ATCAACAAAGACTGATTTTCGCTGGAAAGCAACTGGAAGATGGGCGCACATTGTCAGACT 265 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGT 28005 | || ||||| || ||| ||||||||||| || |||||| Sbjct 266 ATAATATCCAGAAGGAGTCTACTTTGCATTTAGTCTTGCGT 306 >seq20505 Length=7550 Score = 86.0 bits (94), Expect = 4e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||| || || || ||||| || ||| ||||| |||| || || | | Sbjct 4391 AATGCAAATTTTCGTCAAGACCCTTACGGGTAAAACCATTACCCTTGAGGTGGAGGCCTC 4450 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 || | || || || ||| ||||| || || |||||| |||| || || Sbjct 4451 TGATACTATAGAAAATGTAAAAGCTAAAATCCAAGATAAGGAAGGTATTCCACCAGACCA 4510 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 |||||| || || ||||| || |||||| | || || | ||| | ||||| || ||||| Sbjct 4511 GCAACGTTTGATCTTTGCTGGTAAACAACTAGAAGATGGACGTACATTGTCTGACTACAA 4570 Query 27969 CATCCAAAAAGAGAGCACTTTGCAT 27993 ||| ||||| || ||| |||||| Sbjct 4571 CATTCAAAAGGAATCCACATTGCAT 4595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354549450901929