Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20elevatus_20bari_20[genbank_20GCA_5F900068365.1_202017- 04-25] 302,727 sequences; 364,783,738 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq50497 205 8e-48 seq22292 107 2e-18 seq225328 100 2e-16 seq22291 100 2e-16 seq128380 86.0 5e-12 >seq50497 Length=2916 Score = 205 bits (226), Expect = 8e-48 Identities = 631/965 (65%), Gaps = 21/965 (2%) Strand=Plus/Plus Query 109141 GCGTACTTTGTCGAATGGGGTGTGTACGGCCGCAATTTTCCCGTGGACAAAGTGCCGTTG 109200 || ||||| || ||||||||||| || | || || |||||||| | || | Sbjct 685 GCCTACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTGGATCGTATACCTATA 744 Query 109201 CCCAATTTATCGCATTTGCTGTACGGTTTTATTCCAATATGTGGCGGCGACGGCATCAAC 109260 || ||| | | || ||||| ||||| ||||||||||| || ||||| || |||||||| Sbjct 745 CCTAATCTTACTCACTTGCTCTACGGCTTTATTCCAATTTGCGGCGGTGATGGCATCAAT 804 Query 109261 GACGCCCTCAAAACCATTCCCGGCAGTTTTGACGCTTTGCAACGATCGTGCCGCGGTCGC 109320 || | ||| || |||||||| | || | || || || || |||| || Sbjct 805 GATAGTTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTACAGCGGTCCTGTAGCGGCCGT 864 Query 109321 GACGATTTCAAAGTGTCCATACACGACATTTGGGCCGCGGTGCAAAAACCGCAAAAAGGC 109380 || || |||||||| || || ||||| ||||| || | |||||||| |||||||| Sbjct 865 GAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGGA 924 Query 109381 GTGACCGCGTGGAACGAGCCGTACAAAGGCAACTTTGGACAATTGATGGCGGCCAAATTG 109440 || | | ||||||||||| || |||||||||||||| ||||| ||| | ||| Sbjct 925 TTGTCTTCATGGAACGAGCCCTATAAAGGCAACTTTGGCCAATTAATGTCACTAAAACAA 984 Query 109441 GCAAATCCTCACGTTAAAATTCTACCGTCCATAGGCGGGTGGACG-TTGTCGGACCCGTT 109499 ||| ||| | | || ||||| || || || || ||||||||| ||| || || | Sbjct 985 GCACGCCCTGAATTGAAGATTCTTCCCTCTATTGGAGGGTGGACGCTTGCCGATCCTTTC 1044 Query 109500 TTATTTT--ATGCACGATTCGGCGAAAAGAGCCACATTCGTTGAATCGGTGCGCGAATTT 109557 || |||| | || | | | || ||| | ||| || | || || || ||| Sbjct 1045 TTCTTTTTAGTTGACAAAT---CTAAGAGAACACGATTTGTGCAGTCAGTAAAGGAGTTT 1101 Query 109558 TTACAAGTGTGGAAATTCTTTGACGGCGTCGACATTGATTGGGAGTTTCCGGGCGGCAAG 109617 | | | ||||||||||| || || || || || ||||||||||| || || ||||| Sbjct 1102 CTTCTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGGCAAA 1161 Query 109618 GGTGCCAATCCGAGTCTCGGCGACGCA-ACGCGCGACAGCAAAACGTACATTGCGTTGTT 109676 ||||| || || ||||| | || | | | | | ||| | ||| | Sbjct 1162 GGTGCTAACCCTGACCTCGGTAGCCCAGAAGATGGTGATTGTTATGTAAGT----TTGAT 1217 Query 109677 AAAAGAGTTGCGCGCCATGTTGGACGACTTGCAAACGGCCACCAA---CAAAACGTACGA 109733 ||||| | || | ||| | || || || | || | || || | ||||| Sbjct 1218 GAAAGAACTACGTGAGATGCTCGATGA---GCTCTCAGCTAAGAATGGTAAGAAATACGA 1274 Query 109734 ATTGACGAGCGCCATTAGCGCCGGTTACGATAAAATTGACGTGGTCGATTACGCGTCGGC 109793 ||| || || ||||| || || | ||||||||| | || || || || | ||| Sbjct 1275 ATTAACTTCTGCTATTAGTGCTGGATGGGATAAAATTCAAGTTGTTGACTATGGCAAGGC 1334 Query 109794 GCAACAATATTTGGACAAAATATTTTTAATGACATACGATTTCAAAGGCGCTTGGTCAAA 109853 ||| | ||| |||| | || || || |||| ||||| ||||| || || |||||||| Sbjct 1335 TCAAAATTATATGGATCATATTTTCTTGATGAGTTACGACTTCAAGGGAGCCTGGTCAAA 1394 Query 109854 CACGGACT-TAGGCTATCACACGACTGTGTACGCGCCCACGTGGAATCCAAACGAATTGT 109912 ||| | || |||| ||| | |||||||||| |||||||||| || ||| | Sbjct 1395 -TGATACTCTTGGACATCAAACGCCATTGTACGCGCCTGCGTGGAATCCCAAGGAAACTT 1453 Query 109913 ACACGACCGATGTGGCGGTCAAAGAGCTGTTCAAACAAAAAGTGTCGCCTaaaaaaaTTA 109972 |||| | || | | || ||| | || | || |||| ||||| || ||| Sbjct 1454 ACACATCTGACTTCGGAGTAAAATACTTGCTGGCGCAGGGAGTGAATCCTAAGAAGATTG 1513 Query 109973 TAATTGGCGTAGCGATGTACGGCCGCGGCTGGACGGGCG-TCGTGCACGCCGACGACGCG 110031 || | || || || ||||| || || |||||||| |||| || || | ||| ||| Sbjct 1514 TAGTAGGTGTTGCTATGTATGGTCGTGGCTGGACTGGCGTTCATG-ATTACGAAGACAAC 1572 Query 110032 AATCCGTTTTTGGGCATCGCCTCCGGTCCCGTGGAAGGCACTTGGGAAAACGGCGTGGTG 110091 | ||| || |||| ||| | || || || |||| |||||| || |||| || || Sbjct 1573 ATTCCCTTCACAGGCAACGCTACTGGACCTGTCAAAGGAACTTGGCAAGACGGAGTTGTT 1632 Query 110092 GACTA 110096 ||||| Sbjct 1633 GACTA 1637 >seq22292 Length=1070 Score = 107 bits (118), Expect = 2e-18 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 101029 CACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTC 101088 ||| | ||||| ||||| |||||||||||||||||||| | || ||| |||||| Sbjct 444 CACTAAGTGCAGGGTTGACTCTTTTTGAATATTGTAATCAGACAAAGTGCGACCATCTTC 385 Query 101089 CAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGC 101148 |||||| || || ||| | || || | ||||||||| ||| | |||||| || || Sbjct 384 CAATTGCTTTCCAGCAAAAATGAGACGCTGTTGGTCTGGGGGGATGCCTTCCTTATCCTG 325 Query 101149 AATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGT--TTCGACGGTAATAGTT 101206 ||||| |||||||| | | || || | | ||| | ||| | |||||| || Sbjct 324 TATTTTAGCTTTCACATTCTCGATTGTGTCAGATG--GTTCTACTTCCAGGGTAATGGTC 267 Query 101207 TTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 || || ||||||||||| | ||| |||||||| Sbjct 266 TTTCCAGTCAATGTTTTGACAAATATTTGCAT 235 >seq225328 Length=614 Score = 100 bits (110), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 101030 ACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCC 101089 |||| ||||| ||||| ||||| |||||||||||||| | || ||| ||||||| Sbjct 215 ACCAAGTGCAGGGTTGACTCTTTCTGAATATTGTAATCAGACAAAGTGCGACCATCTTCC 156 Query 101090 AATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCA 101149 ||||| || || ||| | || || | ||||||||| ||| | ||| || || || Sbjct 155 AATTGCTTTCCAGCAAAAATGAGACGCTGTTGGTCTGGGGGGATGCCCTCCTTATCCTGT 96 Query 101150 ATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGT--TTCGACGGTAATAGTTT 101207 ||||| ||| |||| | | || || | | ||| | ||| | ||||||||| | Sbjct 95 ATTTTAGCTTTGACATTCTCGATTGTATCAGATG--GTTCTACTTCCAGGGTAATAGTCT 38 Query 101208 TGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 | || ||||||||||| | ||| |||||||| Sbjct 37 TTCCAGTCAATGTTTTGACAAATATTTGCAT 7 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || ||||| || | ||| |||| ||||||||| || ||||| ||||||||||| || | Sbjct 461 CCTCCTCGTAAACGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAG 402 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| | ||| |||| || ||||| || | || || | |||||| ||| ||| Sbjct 401 AGAGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCTGGGGGA 342 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--G 101189 | || |||||||| || || ||| |||| | | || |||| || ||| Sbjct 341 ATACCCTCTTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCTGAGG--GTTCAA 284 Query 101190 TTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 ||| | || |||||||| || |||| ||| || | ||| || ||||| Sbjct 283 CTTCTAATGTGATAGTTTTCCCTGTCAGTGTCTTTACAAAGATCTGCAT 235 >seq22291 Length=1216 Score = 100 bits (110), Expect = 2e-16 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 101035 GTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGA--ATCTTCCAAT 101092 ||||||||| ||||||||||| || ||||| || | ||||| | || |||||| ||| Sbjct 719 GTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAG--ATAGTGTACGACCATCTTCTAAT 662 Query 101093 TGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATT 101152 || ||||||||| | ||||| | |||||| || || | |||||||||||| ||| Sbjct 661 TGCTTGCCCGCAAAAATAAGACGTTGTTGATCCGGAGGAATGCCTTCTTTGTCTTGGATT 602 Query 101153 TTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTGCCC 101212 || |||||||| | | || || | | ||| | ||||| ||||| || Sbjct 601 TTAGCTTTCACATTTTCAATTGTGTCAGAAGCTTCAACTTCTAAAGTAATTGTTTTTCCA 542 Query 101213 GTCAATGTTTTAATAAAAATTTGCAT 101238 || | |||||||| ||| |||||||| Sbjct 541 GTGAGTGTTTTAACAAAGATTTGCAT 516 >seq128380 Length=670 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| || | || |||| |||||||| ||||| || |||||||||||||| | Sbjct 305 CCACCTCTCAGCCGTAGTACCAGATGCAAAGTAGATTCCTTCTGAATATTGTAATCAG-- 248 Query 101072 ATAGTTTTGG--AATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGG 101129 ||||| | | |||||| | || || || ||| | ||||| ||||| || ||| || Sbjct 247 ATAGTGTGCGTCCATCTTCTAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGG 188 Query 101130 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTG 101189 | | || ||||| || |||||| ||| |||| | | || || | | | Sbjct 187 GAATTCCCTCTTTATCCTGAATTTTCGCTTTAACATTTTCAATTGTATCAGAAGGCTCAA 128 Query 101190 TTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCATT 101239 ||| | || ||||| ||||| |||||||| || | |||||||||||| Sbjct 127 CTTCTAAAGTGATAGTCTTGCCAGTCAATGTCTTTACGAAAATTTGCATT 78 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 101035 GTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTG 101094 ||| ||||| ||||| || ||||||||||| || | || || |||||| | || Sbjct 510 GTGTAAAGTAGATTCCTTCTGAATATTGTAGTCAGACAGTGTGCGTCCATCTTCAAGCTG 451 Query 101095 TTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTT 101154 || || ||| | |||||||||||||||||| || | ||||| || || |||||| Sbjct 450 CTTTCCAGCAAAAATAAGCCTTTGTTGGTCTGGAGGAATTCCTTCCTTATCTTGAATTTT 391 Query 101155 TTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTGCCCGT 101214 || |||| | | || || | || | ||| | || ||||||||||| || Sbjct 390 GGCCTTAACATTTTCGATTGTGTCAGAGGGCTCAACTTCCAGTGTGATAGTTTTGCCAGT 331 Query 101215 CAATGTTTTAATAAAAATTTGCATT 101239 || ||| || | ||| ||||||||| Sbjct 330 CAGTGTCTTTACAAATATTTGCATT 306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408149362495293