Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20elevatus_20bari_20[genbank_20GCA_5F900068365.1_202017- 04-25] 302,727 sequences; 364,783,738 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq50497 167 2e-36 seq22291 113 3e-20 seq22292 111 1e-19 seq20505 102 6e-17 seq19754 91.5 1e-13 >seq50497 Length=2916 Score = 167 bits (184), Expect = 2e-36 Identities = 771/1210 (64%), Gaps = 45/1210 (4%) Strand=Plus/Minus Query 5735 TGTTACCTA-ACCCTTGATTCATGGAGTTTAACAAGTCGCCGTTGTCCGCGTCGATTTCC 5793 |||| || | |||| || ||||||| || | | || ||||| || ||||| | |||| Sbjct 1876 TGTTGCCGAGACCCATG-TTCATGGCATTCAGTAGATCACCGTTATCAGCGTCCACTTCC 1818 Query 5794 CATCCAAATAGACCCCCCAGCCCCTTTTGGATGACATATTTTCCCTTGGCCGTCACGGAC 5853 || | || ||||| || ||| || | | |||||||| ||||| | | ||||| Sbjct 1817 CAAGCGAAGAGACCACCTAGCTTGTTATTTCTTACATATTTACCCTTTTCAATAACGGAT 1758 Query 5854 CTCTCGTCGTCGTAGGTGACGAGATCGTC-GTTG-TGGT----ACACGTAGGGCGCTTGC 5907 || | | || ||||| || ||||| | |||| |||| | ||||| || ||||| Sbjct 1757 CTAGCATTATCATAGGTTACAAGATCTCCAGTTGATGGTCTGAAGACGTAAGGGGCTTGG 1698 Query 5908 GCCACTCCGTCGTAAT-----------TCGGGTTGGG--ATACCGGTTCGTGATGTCTTT 5954 || || |||||||| | | ||| | || | |||| || || | Sbjct 1697 GCGACATTGTCGTAATGGAACTCCCACTTGCCTTGAGCAATTTCA-TTCGCAATCTCCCT 1639 Query 5955 GTAGTCCACGACACCGTTTTCCCAGGAACCCTTTACGGGACCCGTGGCAGTGCCTGTGAA 6014 |||||| || || |||| || ||| | || || || || || || || |||||||||| Sbjct 1638 GTAGTCAACAACTCCGTCTTGCCAAGTTCCTTTGACAGGTCCAGTAGCGTTGCCTGTGAA 1579 Query 6015 GGGATTGTTGT--TGGTGATGTTGTGGATTCCACGCCATCCCCTGCCGTACATGGCCACG 6072 |||| |||||| | || || || | ||| ||| || | || ||||| || || Sbjct 1578 GGGAATGTTGTCTTCGTAATCATGA--ACGCCAGTCCAGCCACGACCATACATAGCAACA 1521 Query 6073 CCCACCACCAATTTGTTTGGGTTCACGCTCTGATTGAGCAGGCGTTGGACGGCGAACGCG 6132 || || || | || || || ||||| | ||| |||| | || || |||| | Sbjct 1520 CCTACTACAATCTTCTTAGGATTCACTCCCTGCGCCAGCAAGTATTTTACTCCGAAGTCA 1461 Query 6133 GTGGTGTACTTTTCGGTGGGGTTCCATGTGGGCGCGTACAGGGGCGTCTGCAGTCCCAGA 6192 | ||||| |||| |||| ||||| | |||||||||| ||||| || |||| ||| Sbjct 1460 GATGTGTAAGTTTCCTTGGGATTCCACGCAGGCGCGTACAATGGCGTTTGATGTCCAAGA 1401 Query 6193 TCGGTGTTAGACCAGGCTCCCTTGAAATCGTACGTCATGACGAAAATATGATCCAGATAC 6252 || ||||||||||||||||| ||||| |||| | |||||||||||||| ||| Sbjct 1400 GTATCATTTGACCAGGCTCCCTTGAAGTCGTAACTCATCAAGAAAATATGATCCATATAA 1341 Query 6253 TCCTGCACCGCACCGTATTCTACAACGTTTATTTTGTCGTAGCCCCCGCTGATGGCGCTT 6312 | || || || || || ||||| | ||||| || | || | || || || Sbjct 1340 TTTTGAGCCTTGCCATAGTCAACAACTTGAATTTTATCCCATCCAGCACTAATAGCAGAA 1281 Query 6313 GTGAGCAGATACTTGCGACCCGTGCGAGTCTCCAGACCGTCCAGCATGGACCTGAGGTCG 6372 || | || || ||| | || || | || ||||| | || || Sbjct 1280 GTTAATTCGTATTTCTTACCATTCTTAGCTGAGAGCTCATCGAGCATCTCACGTAGTTCT 1221 Query 6373 CCCAAGAGCGCTTGATAGGTGACGCCGTCGACTGTGACGTTTCCTAAGGCAGGATTGGCT 6432 || | | ||| | || || ||| | | || | | |||| || || Sbjct 1220 TTCATCAAACTTACATAACAATCACCATCTTCTG---GGCTACCGAGGTCAGGGTTAGCA 1164 Query 6433 CCCTTGCCTCCGGGAAATTCCCAATCTATGTCCACGCCGTCGAAGAACTTCCAAGTTTCC 6492 || ||||| || || || |||||||| || || || || |||||||| ||||| ||| Sbjct 1163 CCTTTGCCACCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTCCATGTTAGA 1104 Query 6493 AGAAATTCTTCGACGCTCTCTACGAACACCTTTCTTTTAATCGTGTCGTTGAGCTGGTAA 6552 ||||| || | || || || || |||| ||| |||| | | | Sbjct 1103 AGAAACTCCTTTACTGACTGCACAAATCGTGTTCTCTTAGATTTGTCAACTAAAAAGAAG 1044 Query 6553 AAGGGATCGCTCAGCGTCCACCCACCGATCGAGGGCAGGATGGTCAGATGC--GGATTG- 6609 || |||||| ||||||||||| || || ||||| || || ||| || | || || Sbjct 1043 AAAGGATCGGCAAGCGTCCACCCTCCAATAGAGGGAAGAATCTTCA-ATTCAGGGCGTGC 985 Query 6610 -TGTTTTCGTATGGCCATAAGCTGACCGAAATTACCCTTGTA----CATTTCCGAGTAGG 6664 |||||| || | ||| | || || || || || || || |||| | || Sbjct 984 TTGTTTTAGT---GACATTAATTGGCCAAAGTTGCCTTTATAGGGCTCGTTCCATGAAGA 928 Query 6665 CCTCGACGCCCTTCTGGGGTTTTTGTAGTGCGCCCCATATATCGTGTATGGACACCTTGA 6724 | | || || || |||||||||| ||| ||||| |||||| || || || |||| Sbjct 927 C----AATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTGA 872 Query 6725 AGTCGTCTCGTCCCTCGCACGATCGCTGCAGAGCTTCGAACGAGCCCGGCACCTGTTTCA 6784 |||| || || || || || ||||| || |||| ||| ||| | || ||| | Sbjct 871 AGTCCTCACGGCCGCTACAGGACCGCTGTAGTGCTTGGAAACTGCCTTCGATCTCTTTTA 812 Query 6785 GAGCGTCGTTGATACCATCCCCTCCGCACATGGGCACGAATCCGTACAGCAGATGTGTGA 6844 | || ||||| ||||| || ||||| || || | || ||||| |||| || || | Sbjct 811 AACTATCATTGATGCCATCACCGCCGCAAATTGGAATAAAGCCGTAGAGCAAGTGAGTAA 752 Query 6845 GATTGGGAATGGGGATTCTGTCGGCGGGAAACTGTCTGTCGTAAACACCCCACTCCACGA 6904 |||| || || || || | || |||| || | || || |||||||| || |||| Sbjct 751 GATTAGGTATAGGTATACGATCCACGGGGAATTTCCTAGGATAGACACCCCATTCTACGA 692 Query 6905 AGTAAGCTCC 6914 |||| || || Sbjct 691 AGTAGGCACC 682 >seq22291 Length=1216 Score = 113 bits (124), Expect = 3e-20 Identities = 168/237 (71%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160 ||||| ||| || |||| ||| | || || || ||||| || ||||||||||||||| Sbjct 980 TATTTGCATACCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTT 921 Query 44161 GTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220 ||| || | || ||| | || |||| ||||| ||||||||||| | ||||||||| Sbjct 920 GTAGTCAGACAGGGTGCGTCCATCTTCCAATTGCTTACCGGCAAAGATAAGACGCTGCTG 861 Query 44221 ATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGC 44280 ||| | ||| | || || || || || || || | || | || || || | Sbjct 860 ATCAGGAGGGATGCCCTCTTTGTCTTGAATTTTAGCTTTTACATTTTCAATAGTATCAGA 801 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||||| |||| ||||| |||||||| || ||||| || || || || ||||| Sbjct 800 GGGTTCCACTTCCAGGGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 744 Score = 109 bits (120), Expect = 4e-19 Identities = 167/237 (70%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160 ||||| ||| || |||| ||| | || || | ||||| || ||||||||||||||| Sbjct 1208 TATTTGCATACCACCTCGCAGACGCAGTACTAAATGAAGGGTAGACTCCTTTTGGATGTT 1149 Query 44161 GTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220 ||| || | | || | || ||||||||||| ||||||||||| | ||| || || Sbjct 1148 GTAGTCTGATAAGGTACGTCCATCTTCCAGCTGCTTGCCGGCAAAGATAAGACGTTGTTG 1089 Query 44221 ATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGC 44280 ||||| || | ||| || || || ||||| ||| | || | |||||||| | Sbjct 1088 ATCTGGGGGAATACCCTCTTTATCTTGAATCTTAGCCTTTACATTTTCAATGGTGTCAGA 1029 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| |||| || || ||||| || || || ||||| || || |||||||| Sbjct 1028 CGGCTCCACTTCCAGAGTTATAGTCTTGCCTGTTAGTGTCTTGACAAATATTTGCAT 972 >seq22292 Length=1070 Score = 111 bits (122), Expect = 1e-19 Identities = 170/239 (71%), Gaps = 5/239 (2%) Strand=Plus/Minus Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160 ||||| ||| || |||| ||| | || || | ||||| || ||||||||||||||| Sbjct 243 TATTTGCATACCACCTCGCAGACGCAGTACTAAATGAAGGGTAGACTCCTTTTGGATGTT 184 Query 44161 GTAATCGGCGAGTTGG--CGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGC 44218 ||| || ||| || || | || ||||||||||| ||||||||||| | ||| || Sbjct 183 GTAGTC--CGATAAGGTACGTCCATCTTCCAGCTGCTTGCCGGCAAAGATAAGACGTTGT 126 Query 44219 TGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCG 44278 ||||||| || | ||| || || || ||||| ||| | || | |||||||| Sbjct 125 TGATCTGGGGGAATACCCTCTTTATCTTGAATCTTAGCCTTTACATTTTCAATGGTGTCA 66 Query 44279 GCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | | ||||| |||| || || ||||| || || || ||||| || || |||||||| Sbjct 65 GACGGCTCCACTTCCAGAGTTATAGTCTTGCCTGTTAGTGTCTTGACAAATATTTGCAT 7 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| | |||| ||| || || || |||||||| | ||| || | || ||| Sbjct 899 ACCAAGTGCAACGTGGACTCTTTCTGAATATTGTAATCAGAGAGAGTACGACCATCCTCC 840 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || || || | ||| || ||||||| || | ||| || || || Sbjct 839 AGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCTGGGGGAATACCCTCTTTGTCTTGG 780 Query 44249 ATCTTCTGCTTCAA-TGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| |||| || || | || ||||| | || ||| || || | || || || || Sbjct 779 ATCTT-GGCTTTAACATTTTCAATAGTGTCTGAGGGTTCAACTTCTAATGTGATAGTTTT 721 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||||| || ||||| ||||| Sbjct 720 CCCTGTGAGTGTCTTTACAAAGATCTGCAT 691 >seq20505 Length=7550 Score = 102 bits (112), Expect = 6e-17 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 |||||||| |||||||| || | | | || | || || || || || || |||||| Sbjct 4582 TCCTTTTGAATGTTGTAGTCAGACAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAG 4523 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 |||||||| ||||| |||| || | ||||||||| || || || || | || Sbjct 4522 ATCAAACGTTGCTGGTCTGGTGGAATACCTTCCTTATCTTGGATTTTAGCTTTTACATTT 4463 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 |||| || || | || |||||||| | ||||| || || ||||| |||||||| ||| Sbjct 4462 TCTATAGTATCAGAGGCCTCCACCTCAAGGGTAATGGTTTTACCCGTAAGGGTCTTGACG 4403 Query 44327 AAGATTTGCATGATGTGA 44344 || |||||||| ||||| Sbjct 4402 AAAATTTGCAT--TGTGA 4387 >seq19754 Length=5595 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| || | || | |||||| | ||| | || |||||| ||||| || || Sbjct 4723 TTGCATTCCACCCCGTAGACGCAACACTAAGTGCAAAGTAGACTCCTTCTGGATATTATA 4664 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | | | |||| | || || || ||||| ||||| || |||| | || ||||| Sbjct 4663 GTCAGACAATGTGCGCCCATCTTCGAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATC 4604 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || ||| | |||||||| || ||||| ||| | || | || || || | | Sbjct 4603 TGGAGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGC 4544 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 |||||| |||| || || || || || || | || || |||||||||||||||||| Sbjct 4543 TTCCACTTCCAATGTGATGGTTTTCCCAGTTAAAGTTTTTACGAAGATTTGCATGATG 4486 Score = 86.0 bits (94), Expect = 4e-12 Identities = 164/238 (69%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160 ||||| |||||| |||||||| | | || ||||| | || || || || ||||| Sbjct 4954 TATTTGCATTCCACCTCTCAGCCGTAGTACTAGGTGCAAAGTAGATTCTTTCTGAATGTT 4895 Query 44161 GTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220 |||||| | ||| ||| | || || |||||||| || ||||| || | | ||||| Sbjct 4894 GTAATCAGATAGTGTGCGTCCATCTTCTAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTG 4835 Query 44221 ATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAA-TGTTCCTATGGTGTCGG 44279 ||||| || | || || || ||| || ||| |||| || || | || || || | Sbjct 4834 ATCTGGGGGAATTCCCTCTTTATCCTGAATTTTC-GCTTTAACATTTTCAATTGTATCAG 4776 Query 44280 CGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || |||| || || ||||| || || || ||||| ||||| |||||||| Sbjct 4775 AAGGCTCAACTTCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTTACGAAAATTTGCAT 4718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358662220706559