Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20elevatus_20bari_20[genbank_20GCA_5F900068365.1_202017- 04-25] 302,727 sequences; 364,783,738 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq84804 147 5e-30 seq84803 138 3e-27 seq19754 138 3e-27 seq20505 132 1e-25 seq22291 122 2e-22 seq128380 114 3e-20 seq91707 100 7e-16 >seq84804 Length=1020 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| |||||||| || || || ||||| || ||| | || |||||| || ||| Sbjct 94 CAAATTTTTGTGAAAACACTAACTGGCAAAACTATTACCTTAGAAGTGGAAGCTTCTGAC 153 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || ||| ||||||||||||||||||||| || ||||| || || ||| Sbjct 154 ACAATCGAAAATGTTAAAGCAAAGATTCAGGACAAAGAAGGCATTCCTCCTGATCAACAA 213 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || ||||| ||||| || || |||||||| | || | | || ||||| || Sbjct 214 AGACTGATTTTCGCTGGAAAGCAACTGGAAGATGGGCGCACATTGTCAGACTATAATATC 273 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || || || || ||||| | || ||| | || ||| Sbjct 274 CAGAAGGAGTCTACTTTGCATTTAGTCTTGCGTCTAAGA 312 >seq84803 Length=1104 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| |||||||| | || || ||||| || || | || || ||| || || Sbjct 367 CAAATTTTTGTGAAAACATTGACTGGCAAAACTATTACTTTGGAAGTAGAAGCTTCTGAT 426 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || ||||||||| ||||| ||||| || ||||| || || ||| Sbjct 427 ACTATCGAAAATGTTAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAACAA 486 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || ||||||||||| || || |||||||| | || | | || ||||| || Sbjct 487 AGACTGATTTTCGCCGGAAAGCAACTGGAAGATGGGCGCACATTGTCAGACTATAATATC 546 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || |||||||| || || || |||||| | ||||| ||| Sbjct 547 CAGAAAGAATCTACCCTTCACCTTGTTCTCAGACTTAGA 585 >seq19754 Length=5595 Score = 138 bits (152), Expect = 3e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| |||||||| || || || ||||| || ||| | || |||||| || ||| Sbjct 5405 CAAATTTTTGTGAAAACACTGACTGGCAAAACTATTACCTTAGAAGTGGAAGCTTCTGAC 5464 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || ||||||||||||||||||||| || ||||| || || ||| Sbjct 5465 ACAATCGAAAATGTTAAGGCAAAGATTCAGGACAAAGAAGGCATTCCTCCTGATCAACAA 5524 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || ||||| ||||| || || |||||||| | || | |||| ||||| || Sbjct 5525 AGACTGATTTTCGCTGGAAAGCAACTGGAAGATGGGCGTACATTGTCCGACTATAATATC 5584 Query 178104 CAAAAAGAATC 178114 || || || || Sbjct 5585 CAGAAGGAGTC 5595 Score = 131 bits (144), Expect = 4e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| |||||| | || || ||||| ||||| | || |||||| || || Sbjct 4493 CAAATCTTCGTAAAAACTTTAACTGGGAAAACCATCACATTGGAAGTGGAAGCTTCTGAT 4552 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || ||||||||| ||||| ||||| || ||||| || || ||| Sbjct 4553 ACAATCGAAAACGTAAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAACAA 4612 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || ||||||||||| || ||||||||||| | || | | || ||||| || Sbjct 4613 AGACTGATTTTCGCCGGAAAGCAACTCGAAGATGGGCGCACATTGTCTGACTATAATATC 4672 Query 178104 CAAAAAGAATCAACACTGCA 178123 || || || || || |||| Sbjct 4673 CAGAAGGAGTCTACTTTGCA 4692 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || || || || || || ||||| | || || || || || Sbjct 4721 CAAATTTTCGTAAAGACACTGACTGGCAAGACTATCACTTTGGAAGTTGAGCCTTCTGAT 4780 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || |||||||| ||||| ||||| || || || |||||| Sbjct 4781 ACAATTGAAAATGTTAAAGCGAAAATTCAGGATAAAGAGGGAATTCCCCCAGATCAGCAA 4840 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||| || || ||||| ||||| ||||||||| | || || | ||||| ||| | Sbjct 4841 AGACTTATTTTTGCTGGAAAGCAGCTAGAAGATGGACGCACACTATCTGATTACAACATT 4900 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || |||||||| || |||| || || Sbjct 4901 CAGAAAGAATCTACTTTGCACCTAGT 4926 >seq20505 Length=7550 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || || || || ||||| || ||||| |||||||| ||| || Sbjct 4395 CAAATTTTCGTCAAGACCCTTACGGGTAAAACCATTACCCTTGAGGTGGAGGCCTCTGAT 4454 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || || || || || ||||| || || || ||||||||| Sbjct 4455 ACTATAGAAAATGTAAAAGCTAAAATCCAAGATAAGGAAGGTATTCCACCAGACCAGCAA 4514 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || ||||| || ||||||||| | || | | || || ||| | Sbjct 4515 CGTTTGATCTTTGCTGGTAAACAACTAGAAGATGGACGTACATTGTCTGACTACAACATT 4574 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| ||||| ||| |||||||||| Sbjct 4575 CAAAAGGAATCCACATTGCATCTTGT 4600 >seq22291 Length=1216 Score = 122 bits (134), Expect = 2e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| ||||| |||||||| || || | || || ||| || ||| Sbjct 519 CAAATCTTTGTTAAAACACTCACTGGAAAAACAATTACTTTAGAAGTTGAAGCTTCTGAC 578 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || || || ||||||||||| || |||||||| || ||| Sbjct 579 ACAATTGAAAATGTGAAAGCTAAAATCCAAGACAAAGAAGGCATTCCTCCGGATCAACAA 638 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| || || || || || | |||||||| | || || | || || ||| || Sbjct 639 CGTCTTATTTTTGCGGGCAAGCAATTAGAAGATGGTCGTACACTATCTGACTACAACATC 698 Query 178104 CAAAAAGAATCAACACTGCA 178123 ||||||||||| || |||| Sbjct 699 CAAAAAGAATCTACTTTGCA 718 Score = 118 bits (130), Expect = 3e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||||| ||||||||||| ||||| | ||||| ||| ||| ||| Sbjct 291 CAGATCTTTGTTAAGACTCTTACAGGAAAAACCATCACTTTAGAGGTAGAACCCTCCGAC 350 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || |||||| || |||||||| || || || || || || || Sbjct 351 ACTATTGAAAATGTGAAGGCAAAGATCCAAGACAAAGAGGGTATTCCCCCAGATCAACAG 410 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || || || || |||||||| || |||||||| | || | | |||||||| | Sbjct 411 AGGCTGATTTTTGCTGGAAAACAACTGGAAGATGGCCGTACATTATCTGATTATAATATT 470 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||||| ||||| || || ||| | || ||| Sbjct 471 CAAAAGGAATCTACCCTACATTTAGTATTG 500 Score = 105 bits (116), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || |||||||| || || || ||||| || || | || || ||| Sbjct 57 AAAATGC---AGATCTTTGTGAAAACACTTACGGGTAAAACCATTACTTTGGAAGTTGAA 113 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || || || || || || ||| || ||||| ||||| ||||| || ||||| Sbjct 114 CCTTCCGATACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAGGAAGGCATTCCTCCA 173 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || || ||||| | || ||||| ||||| || | ||||| ||| | |||||| | || Sbjct 174 GATCAACAACGTTTGATTTTCGCTGGAAAGCAATTGGAAGACGGACGCACTCTTTCTGAC 233 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || || | ||||||||||| || || || |||| Sbjct 234 TACAATATTCAAAAAGAATCTACTCTTCA-CTTG 266 >seq128380 Length=670 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || | || || || || ||||| | || || || || || Sbjct 82 CAAATTTTCGTAAAGACATTGACTGGCAAGACTATCACTTTAGAAGTTGAGCCTTCTGAT 141 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || |||||||| ||||| ||||| || || || |||||| Sbjct 142 ACAATTGAAAATGTTAAAGCGAAAATTCAGGATAAAGAGGGAATTCCCCCAGATCAGCAA 201 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||| || || ||||| ||||| ||||||||| | || || | ||||| || | Sbjct 202 AGACTTATTTTTGCTGGAAAGCAGCTAGAAGATGGACGCACACTATCTGATTACAATATT 261 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || ||||||| || Sbjct 262 CAGAAGGAATCTACTTTGCATCTGGT 287 Score = 109 bits (120), Expect = 1e-18 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||| |||| |||||||| || || || ||||| || ||| | || |||||| || ||| Sbjct 538 CAAGTTTTTGTGAAAACACTGACTGGCAAAACTATTACCTTAGAAGTGGAAGCTTCTGAC 597 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || ||| ||||||||||||||||||||| || ||||| || || ||| Sbjct 598 ACAATCGAAAATGTTAAAGCAAAGATTCAGGACAAAGAAGGCATTCCTCCTGATCAACAA 657 Query 178044 CGACTTATCTTCG 178056 |||| || |||| Sbjct 658 AGACTGATTTTCG 670 >seq91707 Length=5726 Score = 100 bits (110), Expect = 7e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| || || || || || |||||||| ||||| || ||| ||| Sbjct 2073 CAGATTTTCGTGAAAACCCTAACGGGTAAGACCATCACCCTTGAGGTCGAGCCCTCGGAC 2014 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| ||||| ||||| || || ||||| ||||| || || ||||||||| Sbjct 2013 ACTATCGAGAATGTCAAGGCCAAGATCCAAGATAAAGAGGGAATTCCCCCAGACCAGCAA 1954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1199062300208038