Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20elevatus_20bari_20[genbank_20GCA_5F900068365.1_202017- 04-25] 302,727 sequences; 364,783,738 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq225328 111 1e-19 seq22292 102 8e-17 seq84803 100 3e-16 seq22291 89.7 5e-13 seq20505 89.7 5e-13 seq19754 84.2 2e-11 seq128380 82.4 7e-11 >seq225328 Length=614 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||| |||||| |||| |||| ||| ||| |||||||| || ||||| ||| Sbjct 461 CCTCCTCGTAAACGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAG 402 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || ||||||||||| ||||| || || || ||||| || | |||| Sbjct 401 AGAGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCTGGGGGA 342 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||| |||| | || | || |||| ||| | | |||||| | || || Sbjct 341 ATACCCTCTTTGT-CTTGGATCTTGGCTTTAACATTTTCAATAGTGTCTGAGGGTTCAAC 283 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || ||||| || ||||| |||||||| || |||||||| Sbjct 282 TTCTAATGTGATAGTTTTCCCTGTCAGTGTCTTTACAAAGATCTGCAT 235 >seq22292 Length=1070 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||| ||||| |||| |||| |||| ||| |||||||| || || || ||| Sbjct 917 CCTCCTCGTAAACGTAGAACCAAGTGCAACGTGGACTCTTTCTGAATATTGTAATCAGAG 858 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || ||||||||||| ||||| || || || ||||| || | |||| Sbjct 857 AGAGTACGACCATCCTCCAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCTGGGGGA 798 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||| |||| | || | || |||| ||| | | |||||| | || || Sbjct 797 ATACCCTCTTTGT-CTTGGATCTTGGCTTTAACATTTTCAATAGTGTCTGAGGGTTCAAC 739 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || ||||| || || || |||||||| || |||||||| Sbjct 738 TTCTAATGTGATAGTTTTCCCTGTGAGTGTCTTTACAAAGATCTGCAT 691 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || | ||| || || |||||| || ||||| ||||| || Sbjct 233 CCACCTCGCAGACGCAGTACTAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGAT 174 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||| || | || || |||||||||||||| || || || || ||||| || | |||| Sbjct 173 AAGGTACGTCCATCTTCCAGCTGCTTGCCGGCAAAGATAAGACGTTGTTGATCTGGGGGA 114 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||| || | | ||| | || || | || | | ||||| || |||||| Sbjct 113 ATACCCTCTTTAT-CTTGAATCTTAGCCTTTACATTTTCAATGGTGTCAGACGGCTCCAC 55 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| ||||| || || || || || ||||| || || || ||||| Sbjct 54 TTCCAGAGTTATAGTCTTGCCTGTTAGTGTCTTGACAAATATTTGCAT 7 >seq84803 Length=1104 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 |||||||||||||| ||||| || || || || | || || || || || || ||||| Sbjct 326 TCCTTCTGAATGTTGTAGTCTGACAGTGTACGTCCATCTTCAAGTTGTTTTCCAGCGAAA 267 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 || || | ||||||||| | ||||| | |||||| | | ||| ||||||||| ||| Sbjct 266 ATAAGCCTCTGTTGGTCTGGGGGAATCCCCTCCTTAT-CTTGAATTTTTGCTTTAACATT 208 Query 41792 GAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | ||||| | ||| || || | || || |||||||| || ||||| ||||| Sbjct 207 TTCAATTGTGTCAGAAGGCTCAACTTCAAGAGTAATAGTTTTACCAGTAAGCGTTTTTAC 148 Query 41851 GAAAATCTGCAT 41862 ||||| ||||| Sbjct 147 AAAAATTTGCAT 136 >seq22291 Length=1216 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| || |||| || || || || || ||||| || ||||| || Sbjct 286 CCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAA 227 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || | ||||| || ||||| |||| || ||||| || | ||| Sbjct 226 AGAGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGA 167 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCAC 41814 | || |||||||| ||| |||| |||| || || ||| ||| | || || Sbjct 166 ATGCCTTCCTTGTCT-TGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAAC 108 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||| || || ||||||||||| || || || || || |||||||| || Sbjct 107 TTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTT 57 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || || |||||| || ||||| ||||| || Sbjct 970 CCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 911 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || | ||||| ||||| || || || ||||| || || | || Sbjct 910 AGGGTGCGTCCATCTTCCAATTGCTTACCGGCAAAGATAAGACGCTGCTGATCAGGAGGG 851 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCAC 41814 | || ||| ||||| ||| |||| |||| || || ||| || | ||||| Sbjct 850 ATGCCCTCTTTGTCT-TGAATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCAC 792 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || || || || || || ||||||||||| Sbjct 791 TTCCAGGGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 744 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || | ||| || || |||||| || ||||| ||||| || Sbjct 1198 CCACCTCGCAGACGCAGTACTAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCTGAT 1139 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||| || | || || |||||||||||||| || || || || ||||| || | |||| Sbjct 1138 AAGGTACGTCCATCTTCCAGCTGCTTGCCGGCAAAGATAAGACGTTGTTGATCTGGGGGA 1079 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||| || | | ||| | || || | || | | ||||| || |||||| Sbjct 1078 ATACCCTCTTTAT-CTTGAATCTTAGCCTTTACATTTTCAATGGTGTCAGACGGCTCCAC 1020 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| ||||| || || || || || ||||| || || || ||||| Sbjct 1019 TTCCAGAGTTATAGTCTTGCCTGTTAGTGTCTTGACAAATATTTGCAT 972 >seq20505 Length=7550 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | ||| ||||||| ||| ||||| |||||||| ||||| || Sbjct 4618 CCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAGAC 4559 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || || || || || || || || |||| || || ||||| | ||| Sbjct 4558 AATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGTGGA 4499 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||| || |||||| |||| || | | ||| || | |||||| Sbjct 4498 ATACCTTCCTTATCTTGGATTTTA-GCTTTTACATTTTCTATAGTATCAGAGGCCTCCAC 4440 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || ||||||||||| || ||||| |||||||| ||||| Sbjct 4439 CTCAAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCAT 4392 >seq19754 Length=5595 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| || ||||||||||| | || ||| | || || || ||||| || ||||| Sbjct 5593 CTCCTTCTGGATATTATAGTCGGACAATGTACGCCCATCTTCCAGTTGCTTTCCAGCGAA 5534 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 ||||| | ||||| || | |||| || || |||||| ||| | ||||| | ||| Sbjct 5533 AATCAGTCTTTGTTGATCAGGAGGAATGCCTTCTTTGTCC-TGAATCTTTGCCTTAACAT 5475 Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | ||||| | ||||| || | || || ||||| || ||||| || || | Sbjct 5474 TTTCGATTGTGTCAGAAGCTTCCACTTCTAAGGTAATAGTTTTGCCAGTCAGTGTTTTCA 5415 Query 41850 CGAAAATCTGCAT 41862 | ||||| ||||| Sbjct 5414 CAAAAATTTGCAT 5402 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 || ||||||||||| || || || || ||||| | || || |||||||| || || || Sbjct 4908 TCTTTCTGAATGTTGTAATCAGATAGTGTGCGTCCATCTTCTAGCTGCTTTCCAGCAAAA 4849 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 || || | || || || | ||||| | ||| || ||| ||| |||| |||| ||| Sbjct 4848 ATAAGTCTTTGCTGATCTGGGGGAATTCCCTCTTTATCC-TGAATTTTCGCTTTAACATT 4790 Query 41792 GAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | || || | ||| || |||| || || || || || ||||| |||||||| Sbjct 4789 TTCAATTGTATCAGAAGGCTCAACTTCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTTAC 4730 Query 41851 GAAAATCTGCAT 41862 |||||| ||||| Sbjct 4729 GAAAATTTGCAT 4718 >seq128380 Length=670 Score = 82.4 bits (90), Expect = 7e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || |||| |||||||||| || ||||||||||| || || || || || ||||| Sbjct 296 AGCCGTAGTACCAGATGCAAAGTAGATTCCTTCTGAATATTGTAATCAGATAGTGTGCGT 237 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||| || || || || || | || || || | ||||| | ||| Sbjct 236 CCATCTTCTAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGAATTCCCTCT 177 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 || ||| ||| |||| |||| ||| | | || || | ||| || || | || Sbjct 176 TTATCC-TGAATTTTCGCTTTAACATTTTCAATTGTATCAGAAGGCTCAACTTCTAAAGT 118 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || |||| |||||||||||||| ||||| Sbjct 117 GATAGTCTTGCCAGTCAATGTCTTTACGAAAATTTGCAT 79 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 ||||||||||| || ||||| || || ||||| | || || |||||||| || || || Sbjct 497 TCCTTCTGAATATTGTAGTCAGACAGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAA 438 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 || || | |||||||| | |||| | ||||| | | ||| |||| || | ||| Sbjct 437 ATAAGCCTTTGTTGGTCTGGAGGAATTCCTTCCTTAT-CTTGAATTTTGGCCTTAACATT 379 Query 41792 GAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | ||||| | ||| || |||| || || ||||| || ||||| |||||||| Sbjct 378 TTCGATTGTGTCAGAGGGCTCAACTTCCAGTGTGATAGTTTTGCCAGTCAGTGTCTTTAC 319 Query 41851 GAAAATCTGCAT 41862 || || ||||| Sbjct 318 AAATATTTGCAT 307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 460554601212400