Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ethilla_20aerotome_20[genbank_20GCA_5F001485985.1_20201 5-12-17] 164,030 sequences; 282,526,854 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq23898 127 3e-24 seq22953 125 1e-23 seq20122 111 2e-19 seq27375 86.0 9e-12 >seq23898 Length=17638 Score = 127 bits (140), Expect = 3e-24 Identities = 145/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 10499 AGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAATCATTC 10558 |||||| || || || ||||| || | ||||| | ||||| | ||||| |||||||| Sbjct 9973 AGCTGGTGTCATAGATGAAGACTACCGTGGAAACATTGGAGTGGTGTTATTCAATCATTC 10032 Query 10559 TAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATATGTGAAAAAAT 10618 | |||||||||| | | || | ||| |||||||| ||||| | |||||||||| ||| Sbjct 10033 CAGTGAAGATTTTGCAGTTAAAAAAGGTGATAGAATTGCTCAACTGATATGTGAAAGAAT 10092 Query 10619 TTTATATCCTAAAATGTTAAAAGTCGATAGTTTATCAGAAACAAAAAGATCTGATTTTGG 10678 ||| || || | || | |||| || | | ||||||||||||||||| || ||| Sbjct 10093 TTTCTACCCAGATATAGTTGAAGTTGACAATCTATCAGAAACAAAAAGAGGGGAAGGTGG 10152 Query 10679 TTTTGGATCTACTGG 10693 |||||| ||||| || Sbjct 10153 TTTTGGGTCTACAGG 10167 >seq22953 Length=36863 Score = 125 bits (138), Expect = 1e-23 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | ||| | |||||||| || | |||||||||||| |||||||| || | Sbjct 14225 TTCCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCGG 14284 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||||||| | | || |||||||| |||||||| |||||||| | ||| ||||| |||| Sbjct 14285 AAAGAGTGCGTCCGTCTTCTAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAG 14344 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 |||| ||||| || ||||| |||||| ||| ||| | Sbjct 14345 GAATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAA 14404 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTT 146280 |||| | || || |||||||| || | |||||| | || || |||||||| Sbjct 14405 CTTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTT 14456 Score = 102 bits (112), Expect = 1e-16 Identities = 98/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 146066 AATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATC 146124 ||||| ||||||| |||||||| ||| || ||||||||||| || | || | || ||| Sbjct 14014 AATACTAAATGTAGGGTAGATTCCTTTTGA-ATATTATAATCAGATAATGTACGGCCATC 14072 Query 146125 ATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATC 146184 || | |||||||||||||||||||| || || ||||| || ||||| || ||||| || Sbjct 14073 TTCCAGTTGTTTTCCAGCAAAAATCAGCCTCTGTTGATCTGGGGGAATACCCTCTTTGTC 14132 Query 146185 TTG 146187 ||| Sbjct 14133 TTG 14135 >seq20122 Length=23100 Score = 111 bits (122), Expect = 2e-19 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||||||||| | || | || | ||||||||||| |||||||| ||||| Sbjct 10176 CCACCTCTAAGTCTGAGAACAAGGTGAAGGGTAGATTCTTTCTGGATATTATAGTCTGAC 10235 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| || | ||| ||||| |||||||||| |||||| ||||| |||||| Sbjct 10236 AATGTGCGCCCATCTTCCAGTTGCTTTCCGGCAAAAATCAGTCTTTGTTGATCTGGAGGA 10295 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || ||||| || ||||| |||||| ||| ||||||| Sbjct 10296 ATGCCTTCCTTGTCTTGAATCTTTGCCTTAACATTTTCGATAGTATCAGAAGCTTCTACT 10355 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || | || || ||||| || || |||||||| | || |||||||| Sbjct 10356 TCCAAAGTAATAGTTTTGCCAGTCAATGTTTTCACAAAAATTTGCAT 10402 Score = 111 bits (122), Expect = 2e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| || | || ||| | || |||||||||||||| || || ||||| | Sbjct 11542 TTCCACCTCTCAGCCGTAGTACTAGGTGCAAAGTAGATTCTTTCTGAATGTTGTAATCAG 11601 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || || | | ||| |||| || |||||||||||||| | |||||||||||| || | Sbjct 11602 ATAGTGTGCGTCCATCTTCTAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGG 11661 Query 146169 GAATTCCTTCTTTATCTTG 146187 ||||||| |||||||| || Sbjct 11662 GAATTCCCTCTTTATCCTG 11680 Score = 111 bits (122), Expect = 2e-19 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | || | || || || || ||||||||||| || |||||||| |||| Sbjct 11770 TTCCACCCCGTAGACGCAACACTAAGTGCAAAGTAGATTCCTTCTGGATATTATAGTCTG 11829 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || || | | ||| || | ||| ||||| || ||||||| |||||| ||||| |||| Sbjct 11830 ACAGTGTGCGCCCATCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAG 11889 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 |||| ||||| || ||||| ||||| ||| ||| | Sbjct 11890 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGCTTCCA 11949 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| | |||||| ||||| || ||||| ||||| | ||| |||||||| Sbjct 11950 CTTCCAATGTGATAGTTTTCCCAGTTAAAGTTTTTACGAAGATTTGCAT 11998 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| || | | ||| ||||||||||||||||| || ||||| || || || Sbjct 11316 CCACCTCTCAGACGAAGTACTAAATGTAAAGTAGATTCCTTCTGAATATTGTAGTCAGAC 11375 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| || | || |||||||||||||| | ||||| || || |||||| Sbjct 11376 AGTGTACGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGCCTTTGTTGGTCTGGAGGA 11435 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| |||||||| Sbjct 11436 ATTCCTTCCTTATCTTG 11452 Score = 98.7 bits (108), Expect = 1e-15 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATT-CTTTAGATATATTATAATCTGA 146109 |||||||| || | | || || || |||||||||| |||| || |||||||| || || Sbjct 10632 CCACCTCTTAGACGCAGAACTAAGTGCAAAGTAGATTCCTTTTGA-ATATTATAGTCAGA 10690 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||| | | ||| |||| ||||| ||||||||||||| || || || || ||||| Sbjct 10691 CAGAGTGCGTCCATCTTCTAGCTGTTTGCCAGCAAAAATCAGCCTCTGTTGGTCTGGAGG 10750 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| || |||||||| || Sbjct 10751 AATGCCCTCTTTATCCTG 10768 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| || | | ||| ||||||||||||||||| || || || || ||||| Sbjct 10404 CCACCTCTCAGACGAAGTACTAAATGTAAAGTAGATTCCTTCTGAATGTTGTAGTCTGAC 10463 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| || | |||||||||||| ||||| | || || || || |||||| Sbjct 10464 AGTGTGCGTCCATCTTCAAGTTGTTTTCCAGCGAAAATAAGCCTCTGTTGGTCTGGAGGA 10523 Query 146171 ATTCCTTCTTTATCTTG 146187 || || || |||||||| Sbjct 10524 ATCCCCTCCTTATCTTG 10540 >seq27375 Length=13220 Score = 86.0 bits (94), Expect = 9e-12 Identities = 96/127 (76%), Gaps = 6/127 (5%) Strand=Plus/Minus Query 27418 GTAGATTCTCATAATATTATACCAGTATGGGTAACTTCAGATAAACAGGAATATAACGCA 27477 |||||| |||| ||| | | ||| ||||| |||| ||||||||||||||| ||| Sbjct 2224 GTAGATGCTCACAATGTGGTGCCATGTTGGGTGGCTTCTGATAAACAGGAATATTCAGCA 2165 Query 27478 AGAACAATAAGGATTAAAATAAA---TAAATTAAAAGATCAATATTTAATCGAATTTCCT 27534 ||||||||||| | |||||| || |||||| |||| ||||| | | ||||||||| Sbjct 2164 AGAACAATAAGAAATAAAATCAATTCTAAATT---AGATGAATATCTCACAGAATTTCCT 2108 Query 27535 AAAGTTA 27541 ||||| Sbjct 2107 CCAGTTA 2101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742001892057600