Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ethilla_20aerotome_20[genbank_20GCA_5F001485985.1_20201 5-12-17] 164,030 sequences; 282,526,854 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq66326 187 2e-42 seq20122 104 2e-17 seq20852 91.5 1e-13 >seq66326 Length=6876 Score = 187 bits (206), Expect = 2e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 13216 ACTGGCCCCGTTGTATGAAGCAGAGACCCGAGCAGATGGCGGATGCCGGTTTCTTCTACA 13275 ||||||| || |||||||||||| || ||| | | || || || || |||||||||| Sbjct 5466 ACTGGCCTCGCAGTATGAAGCAGAAGCCTGAGGAACTCGCCGAAGCGGGATTCTTCTACA 5407 Query 13276 CTGGCTACGGTGACAATACAAAGTGCTTCTATTGTGACGGCGGATTGAAAGATTGGGAGC 13335 | ||| | |||||||| || ||||||||||| ||||||||||| | || || |||||| Sbjct 5406 CCGGCCAGGGTGACAAAACTAAGTGCTTCTACTGTGACGGCGGGCTCAAGGACTGGGAGA 5347 Query 13336 CGGAAGATGTACCTTGGGAACAGCATGTAAGATGGTTCGACCGTTGCGCCTACGTTCAGC 13395 || || || || ||||| ||||| | | ||||||||||| ||||||||||| |||| Sbjct 5346 ACGACGACGTGCCGTGGGAGCAGCACGCGCGCTGGTTCGACCGGTGCGCCTACGTGCAGC 5287 Query 13396 TAGTCAAGGGTAGAGACTACGTACAGAAAGTCATCACGGAAGCCTGCG 13443 | ||||| || |||| ||||| ||||| || |||||||| || |||| Sbjct 5286 TGGTCAAAGGCCGAGAGTACGTCCAGAAGGTGATCACGGAGGCGTGCG 5239 >seq20122 Length=23100 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| | | ||| || || | || |||||||||||||||||||| | Sbjct 10404 CCACCTCTCAGACGAAGTACTAAATGTAAAGTAGATTCCTTCTGAATGTTGTAGTCTGAC 10463 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| ||| | || || ||||||||||| ||||| || | || ||||||||| ||||| Sbjct 10464 AGTGTGCGTCCATCTTCAAGTTGTTTTCCAGCGAAAATAAGCCTCTGTTGGTCTGGAGGA 10523 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||| || ||||||| ||||| | | |||| | ||| || Sbjct 10524 ATCCCCTCCTTATCTTGAATTTTTGCTTTAACATTTTCAATTGTGTCAGAAGGCTCAACT 10583 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||||| || || || || || || || ||||| |||||||| Sbjct 10584 TCAAGAGTAATAGTTTTACCAGTAAGTGTTTTTACAAAAATTTGCAT 10630 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || || ||||||| || |||||||| || || ||||| |||| ||| | || Sbjct 11787 AACACTAAGTGCAAAGTAGATTCCTTCTGGATATTATAGTCTGACAGTGTGCGCCCATCT 11846 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||||||| ||||||||||| |||| | ||||| || ||||| | || |||||||| Sbjct 11847 TCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGAATGCCTTCCTTGTCT 11906 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| ||| ||| || | | | || | | ||||| |||| || || || Sbjct 11907 TGAATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGCTTCCACTTCCAATGTGATAGTT 11966 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 || || || | ||| || || |||||||||||| || Sbjct 11967 TTCCCAGTTAAAGTTTTTACGAAGATTTGCATGATG 12002 >seq20852 Length=11699 Score = 91.5 bits (100), Expect = 1e-13 Identities = 323/500 (65%), Gaps = 10/500 (2%) Strand=Plus/Minus Query 6850 GTTCGCTCCCTTTCCTCCCGGAAACTCCCAGTCAATATCCACTCCGTCGAAAAACTTCCA 6909 ||| || || || || || || |||||||| || ||||| || || ||||| || ||||| Sbjct 2661 GTTAGCACCTTTGCCACCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTCCA 2602 Query 6910 CGTCTCCAGAAACTCGCGCACGCTCTGCACAAACACCCGACGCTTGGCGGAGTCGTGCAT 6969 || || ||||| || ||||||||| | ||| | | | || || Sbjct 2601 TGTTAGAAGGAACTCCTTTACTGACTGCACAAATCGTGTTCTCTTAG---ATTTGT-CAA 2546 Query 6970 CTT----GTAGAAGGGGTCGCTAAGCGTCCACCCGCCTATGGAGGGTAGTATAGTCAGAT 7025 || | |||| || ||| |||||||||||| || || || || || || ||| | Sbjct 2545 CTAAAAAGAAGAAAGGATCGGCAAGCGTCCACCCACCAATAGATGGAAGAATCTTCAATT 2486 Query 7026 TGGGGTTGTGGTGTTTGATGGCCATCAGCTGGCCAAAATTACCCTTATACGGCTCGTCGT 7085 ||| | ||||| | | ||| | |||||||| || || || || ||||||| Sbjct 2485 CAGGGCGGGCTTGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCC 2426 Query 7086 ACGCCTCCACACCCTTTTGTGGTTTCTGTACGGCGCCCCACAAATCGTGTATACTCACTT 7145 | | || || ||||||||||| |||| || |||| |||||| || |||| Sbjct 2425 ATGAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTT 2366 Query 7146 TGAAATCGTCTCGGCCCGCGCACGATCTTTGCAACGCTT-CAAACGACCCCGGCACCTGT 7204 | || || || ||||| || || | || | |||| |||| || | | || | Sbjct 2365 TAAAGTCCTCACGGCCGCTACAGGACCGCTGTAGTGCTTGGAAACTGCCTTCG-ATCTCT 2307 Query 7205 TTCAAGGCGTCGTTGAGTCCGTCTCCCCCGCAAATGGGCACAAATCCGTACAGCAAATGG 7264 || || || |||| ||||| || |||||||| || | ||| ||||| |||||||| Sbjct 2306 TTTAAACTATCATTGATGCCGTCACCGCCGCAAATTGGAATAAAGCCGTAGAGCAAATGA 2247 Query 7265 CTGAGATTGGGCACGGGCACCTTGTCTGCGGGAAACTGCCGTCCGTACACACCCCACTCC 7324 | ||||| || | || | || |||| || | || || |||||||| || Sbjct 2246 GTAAGATTAGGTATAGGTATACGATCCACGGGGAATTTCCTAGGATAGACACCCCATTCT 2187 Query 7325 ACAAAGTACGCCGCCACCAC 7344 || ||||| || |||| || Sbjct 2186 ACGAAGTAGGCACCCACAAC 2167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394285398994630