Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ethilla_20aerotome_20[genbank_20GCA_5F001485985.1_20201 5-12-17] 164,030 sequences; 282,526,854 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq5945 554 6e-153 seq67391 95.1 2e-14 seq46256 89.7 6e-13 seq69558 86.0 8e-12 seq13889 86.0 8e-12 >seq5945 Length=4136 Score = 554 bits (614), Expect = 6e-153 Identities = 1117/1631 (68%), Gaps = 59/1631 (4%) Strand=Plus/Plus Query 62026 TTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGAT 62085 |||||||| | ||||| | || || ||||| | | | ||| ||||| || |||| | Sbjct 1277 TTATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGT 1336 Query 62086 AGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGG 62145 |||||||||| ||||||| ||| | |||| ||| ||||| || ||| ||||| Sbjct 1337 AGTACATTCCTGTTTTTAAACCCATTTTCCAAGCGTGGAAATGAATCGACGTAAGTTTTC 1396 Query 62146 AATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCC 62205 ||| | || | || | ||| || || | |||||||||||| || || || ||||| | Sbjct 1397 CATAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATAAAAGCTCCTC 1456 Query 62206 TGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AACT 62264 | || || ||||| | |||| || ||| ||| ||| ||||| | ||||| || || | Sbjct 1457 TATCAGCTGCCATCTGTATGGATGTTTTTAGTGAAATCTCCCATACGGTTTTGTACAAAT 1516 Query 62265 CGCTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATGGATCCACCATCTACCATAATC 62321 | |||| | |||| |||| ||| | |||| | || |||||| | ||||| Sbjct 1517 CTCTTATT-TCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATA 1575 Query 62322 CTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGG 62381 || || || || |||| ||| || | | || ||| | | || ||||| || Sbjct 1576 AGGTTTTTCATATCTTCATCCCACAAATCAGCCCGAGTCAAATCAGTCAGAAGATGATGG 1635 Query 62382 TTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 62441 || ||||| | ||||||||||| || ||||| | ||||||||| ||| | ||| Sbjct 1636 TTCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAGGGT 1695 Query 62442 TCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 62501 || | || ||| | || || | |||||| ||||| || |||||||||||||| || | | Sbjct 1696 TCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGAGCTATC 1755 Query 62502 AATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGATGTTCCCAATTCC 62559 |||| | ||| | | ||| ||||| || || || ||||| || |||| | || Sbjct 1756 AATAGAGAATTGCGCAAACC--ATGTTTTGCTATCTTTTCTTTAAGGACAGCCCAGTCCC 1813 Query 62560 AAAGATCCGACGG-------TACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTG 62612 |||| || | || | | ||| ||| || || ||||| | || Sbjct 1814 AAAGGTCTGTAGGAGTTTTGTCCCACATATC-------ATACTGGAGGATACCTTGGCTT 1866 Query 62613 GC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGC 62671 || | || ||| |||||| |||| ||||| || ||||||| || |||||| || Sbjct 1867 GCTGGACTC-CCTTGATATGTGCTGTATGCACCTTCTTTTTCAGCTAATTCACAACTAGC 1925 Query 62672 CTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGG 62731 ||||||||||| |||||||| |||||||| || | | ||| ||| | ||||| | Sbjct 1926 TTCTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTGAGAAGTATTGCTTTCTC 1985 Query 62732 GCTATCAAATGGATAATTTAAGAGA-ATAAACGCGTCCGCTAATCCTTGAACACCAATAC 62790 || || | | ||| | | | | | |||||| || || | || ||||||||||||| Sbjct 1986 ACTTTCGTAAG-ATATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATAC 2044 Query 62791 CGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATAT 62850 | ||||||||||||||| |||| || ||| ||||| || | ||||||| |||||| || Sbjct 2045 CAATAGGTCTATGTCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAATTAACAT 2104 Query 62851 CTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 62907 | |||| ||| || | |||| | ||||| ||||| | || || | ||| || Sbjct 2105 CAATAACTTTGTTTAAATTTTGAGTTACAAT--CTTTGTG-ATTTCTTTTAATTTTTTAA 2161 Query 62908 AATCAAATCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGG 62967 ||| ||||| || | ||||||||||| | ||| | || || || || ||||| | Sbjct 2162 AATTAAATCTGTTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTG 2221 Query 62968 CTACCTCATTAGCATCCGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGA 63024 | || |||| | || | | ||||| | | ||||||||||||||| ||||| || | Sbjct 2222 CCACTTCAT---CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAA 2278 Query 63025 TAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATG 63084 |||| || | ||||| ||||||||||||| ||||||| ||||||||||| | ||| ||| Sbjct 2279 TAGTGCCAAGATTTTTTTGATTACTCTTTCTGTTACAAGCATCCTTATACAACATGTATG 2338 Query 63085 GAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTA 63144 | |||||||| || | || | ||||||||||| ||||| | || |||| | | | Sbjct 2339 GTGTACCAGTCTCCACTTGGGCTTCTATAATCGACTTCCATAACTCTTGAGCTCTGACTT 2398 Query 63145 TAGATTTGTATCTCCTTTCTCTT--TCGTATAGAGTATACAATCGTTCGAACTCGTCTCC 63202 | ||| || || ||| |||| || ||| ||||| | | ||| || || ||||| Sbjct 2399 --GTTTTATAAATCGTTTTTCTTCTTCATATTTGGTATATAGTTCTTCAAATTCCTCTCC 2456 Query 63203 CCAAACATTGTCCAAT-CTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCAT 63261 || || | | | | |||||| |||| |||||||| | ||| || |||| Sbjct 2457 A-AAGCAGTCAGCGAGGCCAGGACAGTCATGAGGACACATGAGACTCCAAACT---TCAT 2512 Query 63262 CCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTG 63318 |||| |||| ||||||||| ||||| || ||||| | ||| ||| || ||||| | Sbjct 2513 CCTTTTCTACTCTTTTCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAG 2572 Query 63319 TTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAAT 63378 ||| ||| || || ||||| ||||| || | ||| | ||| | | || || | || Sbjct 2573 CTCTCATTTCTTCCTTACCTGTGTTCTTCTTTAAATCCAAGAATTCAAATATGTCCGCAT 2632 Query 63379 GCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGT 63438 |||| || || || || || || | | || || ||||||||||| || ||||||| | Sbjct 2633 GCCAAGGCTCTAAATAAATTGCAAATGCGCCGGGACGTTTGTTTCCACCTTGATCTACAT 2692 Query 63439 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGG 63498 |||| || || || ||||| |||||||||||||| | | ||| ||||| | ||||| | Sbjct 2693 ATCTGGCAGTATTGTTATACACTCTCAACATTGGCACTAGACCATTTGAGACCCCATTAG 2752 Query 63499 TACCGGAGATATAGCCTCCACTG-GCACGAAT---ATTACTAATTGATAGACCTATTCCC 63554 | || | || || || ||| || | || || || || || |||||| || Sbjct 2753 TGCCAGCTATGTAAGAACC-CTGAGCTCTGATGCAATGTGTA--TG-TAAACCTATGCCA 2808 Query 63555 CCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTA 63614 || || |||||| |||||||| ||| ||||||| || ||| | || ||||| |||||| Sbjct 2809 CCAGCAGATTTAGAAATTAATGCACATTGTTTTAAAGTATCAAAAATACCTTCAATGCTA 2868 Query 63615 TCATCGATCAT 63625 || || |||| Sbjct 2869 TCGTCTTTCAT 2879 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 63807 TTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 63866 || || ||||| |||||||| || ||| ||||||||||||| |||||||||||||||||| Sbjct 3407 TTATTTTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAGTTGTAT 3466 Query 63867 GAAAAGTCTCGTTCGTAAATAAT 63889 ||| |||| || |||| ||| Sbjct 3467 TTAAAATCTCTATCATAAACAAT 3489 >seq67391 Length=3680 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 64017 ttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCC 64076 || || || || || |||| ||| ||||| ||||||||||| || | |||||||||||| Sbjct 3413 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCG 3354 Query 64077 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 64136 ||||| | ||| || ||| ||||| ||||| || || ||| | || | || | ||| Sbjct 3353 GGATGATCTGTGGTCTTAGTAGCTGCAATTTCAGCAGCTAGATTATCAAGCTCAGCAGTT 3294 Query 64137 GTTACTCCATTATATATTCC 64156 ||||| ||| |||||| || Sbjct 3293 GTTACACCAGAATATATGCC 3274 >seq46256 Length=4484 Score = 89.7 bits (98), Expect = 6e-13 Identities = 245/370 (66%), Gaps = 9/370 (2%) Strand=Plus/Plus Query 155252 TTATGACTCCA--ATTAATCCCATGTTAGCGGAATCATGTGATTCTGTCAATAAGGCGTT 155309 ||||||||||| |||| || |||||||| ||| | || | || || | | ||| | Sbjct 1328 TTATGACTCCAGTATTA--CCAATGTTAGCTGAAGCTTGCAAGTCAGTTGAAATGGCTAT 1385 Query 155310 TAAAAAATTTCCATCAGGAATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTACAAGT 155369 ||||||| |||| || |||||| | || | ||||| ||||| ||| | || ||||| Sbjct 1386 GAAAAAATGTCCAAATGGCATGTTTTCTGAGATAAAATATGATGGAGAACGGGTTCAAGT 1445 Query 155370 TCATaaaaaaaaTAACGAGTTTGCATTCTTTAGTAGAAACATGAAACCAGTACTCTCTCA 155429 |||||||| || ||||| || ||| | | | ||||| ||| | |||| Sbjct 1446 CCATAAAAAGGGAAATGAGTTCAAATATTTTTCCCGTGCCTTAAAACCGGTAATGGCTCA 1505 Query 155430 TAAAGTGGATTATCTCAAAGAATACATACCGAAAGCATTT-AAAAAAGCTACGTCTATCG 155488 ||||| | || | ||||| || |||| ||||||||| ||| | | | || | Sbjct 1506 CAAAGTTAGTCATTTTAAAGATTATTTACCTAAAGCATTTCCTAAAGGAGATGACT-TGA 1564 Query 155489 TATTGGATTCTGAAATTGTTCTTGTAGACGAACATAATG---TACCGCTACCGTTTGGAA 155545 | |||||| ||||| | || | || || | ||| || ||| | || || || | Sbjct 1565 TTTTGGATGCTGAAGTACTTATGGTTGATGTCAATACTGGAAAACCATTGCCTTTCGGTA 1624 Query 155546 GTTTAGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTTTG 155605 ||||||||| |||||| | ||||| |||| | || | | || || | | |||| Sbjct 1625 CTTTAGGTATTCACAAACAATCAGAATTTAAAGATGCTCAAGTTTGCTTATATATATTTG 1684 Query 155606 ACTGTTTATA 155615 | || ||||| Sbjct 1685 ATTGCTTATA 1694 >seq69558 Length=3257 Score = 86.0 bits (94), Expect = 8e-12 Identities = 244/370 (66%), Gaps = 9/370 (2%) Strand=Plus/Plus Query 155252 TTATGACTCCA--ATTAATCCCATGTTAGCGGAATCATGTGATTCTGTCAATAAGGCGTT 155309 ||||||||||| |||| || |||||||| ||| | || | || || | | ||| | Sbjct 735 TTATGACTCCAGTATTA--CCGATGTTAGCTGAAGCTTGCAAGTCAGTTGAAATGGCTAT 792 Query 155310 TAAAAAATTTCCATCAGGAATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTACAAGT 155369 ||||||| |||| || |||||| | || | ||||| || || ||| | || ||||| Sbjct 793 GAAAAAATGTCCAAATGGTATGTTTTCTGAGATAAAATATGACGGAGAACGGGTTCAAGT 852 Query 155370 TCATaaaaaaaaTAACGAGTTTGCATTCTTTAGTAGAAACATGAAACCAGTACTCTCTCA 155429 |||||||| || ||||| || ||| | | | ||||||||| | |||| Sbjct 853 CCATAAAAAGGGAAATGAGTTCAAATATTTTTCCCGTGCCTTAAAACCAGTAATGGCTCA 912 Query 155430 TAAAGTGGATTATCTCAAAGAATACATACCGAAAGCATTT-AAAAAAGCTACGTCTATCG 155488 ||||| | || | ||||| || |||| ||||||||| ||| | | | || | Sbjct 913 CAAAGTTAGTCATTTTAAAGATTATTTACCCAAAGCATTTCCTAAAGGAGATGACT-TGA 971 Query 155489 TATTGGATTCTGAAATTGTTCTTGTAGACGAACATAATGTA---CCGCTACCGTTTGGAA 155545 | |||||| ||||| | || | || || | ||| || | || | || || || | Sbjct 972 TTTTGGATGCTGAAGTACTTATGGTTGATGTCAATACTGGAAAGCCATTGCCTTTCGGTA 1031 Query 155546 GTTTAGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTTTG 155605 |||||||| |||||| | ||||| |||| | || | | || || | | |||| Sbjct 1032 CATTAGGTATTCACAAACAATCAGAATTTAAAGATGCTCAAGTTTGCTTATATATATTTG 1091 Query 155606 ACTGTTTATA 155615 | || ||||| Sbjct 1092 ATTGCTTATA 1101 >seq13889 Length=23247 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 34068 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 34127 || |||| || |||||||| | |||||||| ||||| || || ||||||||||| | | Sbjct 22535 TTGGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGC 22476 Query 34128 CAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 || || || |||||||||||||||| ||||| || Sbjct 22475 CATATATCTGGATATTGGATTGGGAATATAACGAA 22441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628526237738400