Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ethilla_20aerotome_20[genbank_20GCA_5F001485985.1_20201 5-12-17] 164,030 sequences; 282,526,854 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq20122 107 1e-18 seq19342 87.8 1e-12 seq22953 86.0 5e-12 >seq20122 Length=23100 Score = 107 bits (118), Expect = 1e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957 || || ||||| | ||| |||||| || | ||| || || |||||||| || | || Sbjct 11103 AAGACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCTGACAATGTGCGCCCATCT 11162 Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017 |||| ||| || || || ||||||| || |||||||| | || | |||||||| || Sbjct 11163 TCCAGTTGCTTTCCAGCGAAAATCAGTCTTTGTTGATCAGGAGGAATGCCTTCTTTGTC- 11221 Query 43018 CTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGT 43076 |||| || | || || | | | |||||| ||| || || |||| || ||||| Sbjct 11222 CTGAATCTTTGCCTTAACATTTTCGATTGTGTCAGAAGCTTCCACTTCTAAGGTAATAGT 11281 Query 43077 TTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||| || || || |||||||||||||||||||| Sbjct 11282 TTTGCCAGTCAGTGTTTTCACAAAAATTTGCAT 11314 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957 || || ||||| | ||| |||||| || | ||| || || |||||||| || | || Sbjct 10875 AAGACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCTGACAATGTGCGACCATCT 10934 Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017 |||| ||| || || || ||||||| || |||||||| | || | |||||| || || Sbjct 10935 TCCAGTTGCTTTCCAGCGAAAATCAGTCTTTGTTGATCTGGAGGAATACCTTCCTTGTCT 10994 Query 43018 CTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTT 43077 || |||| || | | | ||| || ||| || || || | || |||||| Sbjct 10995 TGAATTTTAGCTTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAAAGTGATAGTT 11054 Query 43078 TTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || || || || || || ||||||||||||||| Sbjct 11055 TTCCCAGTCAGTGTCTTTACAAAAATTTGCATT 11087 >seq19342 Length=14378 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 42875 AATCGTCGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGT 42934 ||| || ||||| || |||| | ||| | ||| | ||| |||||||| | |||| Sbjct 4032 AATAGTTACCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGT 4091 Query 42935 AATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGAT 42994 | || |||||||||||| | || || | |||||| || ||||| ||||| || || || | Sbjct 4092 AGTCAGACAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGT 4151 Query 42995 CGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAG 43054 | | || | |||||| || || ||| |||| || | | | || || | Sbjct 4152 CTGGTGGAATACCTTCCTTATCTTGGATTTTAGCTTTTACATTTTCTATAGTATCAGAGG 4211 Query 43055 CCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 |||| || || | || || ||||| || || || || || || |||||||||||| Sbjct 4212 CCTCCACCTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCATT 4267 >seq22953 Length=36863 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | || ||||| || | ||| || ||||| | ||| || ||||| Sbjct 14227 CCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCGGAA 14286 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| |||| || ||||| || || || |||||||| || |||||||| | || Sbjct 14287 AGAGTGCGTCCGTCTTCTAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGA 14346 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || || |||| || | ||| || ||| || || || Sbjct 14347 ATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACT 14406 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || ||||| || || || ||||||||||| || |||||||| Sbjct 14407 TCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTT 14456 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||| || || | ||||||||| ||||| || || |||| ||||||||||| || ||||| Sbjct 13350 CTCTTTCTGAATATTGTAATCAGACAAAGTGCGACCGTCTTCCAATTGTTTTCCAGCAAA 13409 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTC 43036 ||| | |||||||| || | || | || || || || ||| || ||||||| Sbjct 13410 AATGAGACGCTGTTGGTCTGGGGGGATGCCCTCCTTATC-CTGTATTTTAGCTTTGACAT 13468 Query 43037 TGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCA 43096 | ||| |||||| | || || || | || || || ||||| || | ||||| | Sbjct 13469 TCTCAATTGTGTCAGATGGTTCTACTTCCAGGGTAATGGTCTTTCCAGTCAATGTTTTGA 13528 Query 43097 CAAAAATTTGCAT 43109 |||| |||||||| Sbjct 13529 CAAATATTTGCAT 13541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380607198073740