Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ethilla_20aerotome_20[genbank_20GCA_5F001485985.1_20201 5-12-17] 164,030 sequences; 282,526,854 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq20852 176 4e-39 seq20122 100 2e-16 seq66326 93.3 3e-14 seq22953 87.8 1e-12 >seq20852 Length=11699 Score = 176 bits (194), Expect = 4e-39 Identities = 595/912 (65%), Gaps = 35/912 (4%) Strand=Plus/Minus Query 100328 TAATCGACAACGCCGTCTTCCCAAGTGCCGGTCACGGGCCCGGCAGCTGTGCCTGTGAA- 100386 || || || || ||||||| |||||| || | || || || | ||| |||||||||| Sbjct 3128 TAGTCAACCACTCCGTCTTGCCAAGTTCCTTTGACAGGTCCAGTAGCGTTGCCTGTGAAG 3069 Query 100387 --ATAGTTGTCACCGTCATAGCCCGCCACGCCTGTCCAACCGCGGCCGTACATGGCAACG 100444 | |||||| || || | ||||| |||||||| || || ||||| ||||| Sbjct 3068 GGAATGTTGTCTTTGTAAT---CATGAACGCCAGTCCAACCACGACCATACATAGCAACA 3012 Query 100445 CCCACAATAATTTTGCGCGGGTCCACGCCCTGGTTCGTGAGCAA---TTTCACGGCGTGA 100501 || || | ||| || || | ||| ||||| || ||||| ||| || || Sbjct 3011 CCTACTACAATCTTCTTAGGATTCACTCCCTG---CGCCAGCAAGTATTTTACTCCGAAG 2955 Query 100502 TCCGTGTTGTACAGCTCGTTCGGGTTCCAACTCGGCGCGTAGAGAGTGGTTTGGTAGCCC 100561 || | |||| || || || ||||| |||||||| | | ||||| | | || Sbjct 2954 TCAGATGTGTAAGTTTCCTTGGGATTCCACGCAGGCGCGTACAATGGCGTTTGAT-GTCC 2896 Query 100562 AA----ATCGGTGTTTGACCAGGCGCCTTTAAAATCGTAGCTCAT-AAGAAATATTTTAT 100616 || ||| ||||||||||| || || || ||||| ||||| |||||| || | || Sbjct 2895 AAGAGTATCA---TTTGACCAGGCTCCCTTGAAGTCGTAACTCATCAAGAAA-ATATGAT 2840 Query 100617 CGAGAAGCTTTTGCGCAACGTCGTACTGTACCACAGCAATTTTGTCATAGCCGGAACTGA 100676 | | | ||||| || | |||| | || || ||||| || | || | || | Sbjct 2839 CCATATAATTTTGAGCCTTGCCGTAGTCAACAACTTGGATTTTATCCCATCCAGCGCTAA 2780 Query 100677 TTGCGCTTGTCAACTCGTACGTTTTGCCCGTTTGCAGTTGT-AGCTGGTCCAGCATCGCG 100735 | || || || ||||| | || || | | || || |||| || |||||| | Sbjct 2779 TAGCAGAAGTTAATTCGTATTTCTTACCATTCTT-AGCTGAGAGCTCATCGAGCATCTCA 2721 Query 100736 CGCAATTCCTTCAGTAAAATGTTGTACGTGTCGGCGTCGCGCTCCCCGTTGCCAAGAGTC 100795 || ||||| |||| ||| | || || | || || | | || || ||| Sbjct 2720 CGTAATTCTTTCATCAAACTTACATAACAATCACCATCT---TCTGGGCTACCGAG-GTC 2665 Query 100796 -GGGTTGGCGCCTTTGCCGCCCGGAAACTCCCAGTCAATGTCCACGCCGTCAAAAAACTT 100854 ||||| || |||||||| || || |||||||| || || || || || || || || || Sbjct 2664 AGGGTTAGCACCTTTGCCACCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTT 2605 Query 100855 CCACACCTGCAAAAATTCCTTGACCGAGTCCACAAACACGCGCCGTTTTTCCGCATCGTG 100914 ||| | | || ||||| || || | |||||| || | | | | | || Sbjct 2604 CCATGTTAGAAGGAACTCCTTTACTGACTGCACAAAT---CGTGTTCTCTTAGATTTGTC 2548 Query 100915 CATGAAATAGAAC---GGGTCGGACAACGTCCAGCCGCCGATGGACGGCAGAATTTTGAG 100971 | ||| |||| || |||| | |||||| || || || || || ||||| || | Sbjct 2547 AACTAAAAAGAAGAAAGGATCGGCAAGCGTCCACCCACCAATAGATGGAAGAATCTTCAA 2488 Query 100972 GTGCGGATTGGCCAGCTTGGCCGCCATTAGCTGACCGAAATTGCCCTTGTACGGCTCGTT 101031 | || ||| | || | ||||| || || || ||||| ||||| |||||||| Sbjct 2487 TTCAGGGCGGGCTTGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTT 2428 Query 101032 CCATGCGGACACGCCCTTTTGCGGTTTTTGTATTGCGGCCCAGGGATCGTGAATGGCGAC 101091 ||||| |||| || ||||| |||||||||| ||| ||||| |||||||| || | ||| Sbjct 2427 CCATGAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGAC 2368 Query 101092 TTTGAAATCTGAACGACCCTTGCAGGAGCGCTGCAGCGCTTCAAAACTGCCGGGAATGGT 101151 ||| || || ||| || | ||||| ||||| || |||| |||||||| || Sbjct 2367 TTTAAAGTCCTCACGGCCGCTACAGGACCGCTGTAGTGCTTGGAAACTGCCTTCGATCTC 2308 Query 101152 TTTGAGGGCGTCGTTGAGGCCGTCGCCGCCGCAAATGGGTATGAACCCGTACAACAGATG 101211 ||| | || |||| |||||| ||||||||||| || || || ||||| | || ||| Sbjct 2307 TTTTAAACTATCATTGATGCCGTCACCGCCGCAAATTGGAATAAAGCCGTAGAGCAAATG 2248 Query 101212 CGAGAGATTGGG 101223 | ||||| || Sbjct 2247 AGTAAGATTAGG 2236 >seq20122 Length=23100 Score = 100 bits (110), Expect = 2e-16 Identities = 163/234 (70%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| |||| || || || || | |||||| ||||| || || ||||| |||||||| | Sbjct 11542 TTCCACCTCTCAGCCGTAGTACTAGGTGCAAAGTAGATTCTTTCTGAATGTTGTAATCAG 11601 Query 18873 CCATTGTTTTGGCGTCC----TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCC 18928 | ||| |||||| || ||||| || || ||| |||||||||| |||||||| Sbjct 11602 ATAGTGT----GCGTCCATCTTCTAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCT 11657 Query 18929 ACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGC 18988 ||| | |||||||| || ||||||| ||| || | | | ||||| |||| Sbjct 11658 GGGGGAATTCCCTCTTTATCCTGAATTTTCGCTTTAACATTTTCAATTGTATCAGAAGGC 11717 Query 18989 TCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || ||| | || || || || || || | || || || |||||||||||| Sbjct 11718 TCAACTTCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTTACGAAAATTTGCATT 11771 Score = 87.8 bits (96), Expect = 1e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 ||||| | |||||| ||||| ||||| || ||||| || || | || ||| | || Sbjct 11787 AACACTAAGTGCAAAGTAGATTCCTTCTGGATATTATAGTCTGACAGTGTGCGCCCATCT 11846 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 ||||| || || || || |||| ||||| || ||||| || | ||| || ||||| Sbjct 11847 TCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGAATGCCTTCCTTGTCT 11906 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 ||| || ||||| | ||| ||||| || ||| ||| | || || ||| Sbjct 11907 TGAATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGCTTCCACTTCCAATGTGATAGTT 11966 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCATTTTAAATCT 19050 || || ||||||||||| || || |||||||| | ||||| Sbjct 11967 TTCCCAGTTAAAGTTTTTACGAAGATTTGCATGATGAATCT 12007 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/209 (69%), Gaps = 8/209 (4%) Strand=Plus/Plus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC----TCCA 18893 |||||| ||||| |||||||||||||| || || | || || |||||| || | Sbjct 10655 GTGCAAAGTAGATTCCTTTTGAATATTATAGTCAGACAGAGT----GCGTCCATCTTCTA 10710 Query 18894 GCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAA 18953 ||||||| || ||| |||| || ||||| || || || | ||||||||| || || Sbjct 10711 GCTGTTTGCCAGCAAAAATCAGCCTCTGTTGGTCTGGAGGAATGCCCTCTTTATCCTGAA 10770 Query 18954 TTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTAC 19013 |||| || || | | | ||||| || ||| ||| | || || ||||| | Sbjct 10771 TTTTTGCCTTAACATTTTCAATTGTATCAGAAGCTTCCACTTCCAAAGTGATAGTTTTCC 10830 Query 19014 CTGTTAAAGTTTTGACAAAAATTTGCATT 19042 | || | || || ||||||||||||||| Sbjct 10831 CAGTCAGTGTCTTTACAAAAATTTGCATT 10859 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 ||||| ||||||||||| || ||||| || || | || ||| | || ||||| || Sbjct 11112 TGCAAAGTAGACTCCTTCTGGATATTATAGTCTGACAATGTGCGCCCATCTTCCAGTTGC 11171 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || || || |||| ||||| || ||||| || | ||| |||||||| ||| || Sbjct 11172 TTTCCAGCGAAAATCAGTCTTTGTTGATCAGGAGGAATGCCTTCTTTGTCCTGAATCTTT 11231 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018 || || | ||| || || || ||| ||| | |||||| ||||| || || Sbjct 11232 GCCTTAACATTTTCGATTGTGTCAGAAGCTTCCACTTCTAAGGTAATAGTTTTGCCAGTC 11291 Query 19019 AAAGTTTTGACAAAAATTTGCAT 19041 | ||||| |||||||||||||| Sbjct 11292 AGTGTTTTCACAAAAATTTGCAT 11314 >seq66326 Length=6876 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25230 CGCAAAAACGGGCATTGCGGCGCCCATTTTTGATGATCGCGAGCCGGGTCGTCGCCCGCC 25289 |||| || ||||| || |||||||| || || || || || ||||| ||||| Sbjct 5637 CGCAGGAAGGGGCACTGGGGCGCCCAGCGCTGGTGGTCCTTGGCGGGATCGTCACCCGCA 5696 Query 25290 TCCCAGCGCATAATCTCCACTTTGCAAAACGCGCAGCGCACTTCGTCGCCGCGTCCCAAG 25349 |||| |||||| || ||||| |||||||||||||| ||||| |||||||| |||| Sbjct 5697 ACCCATTTCATAATTTCTACTTTACAAAACGCGCAGCGTACTTCATCGCCGCGGCCCAGA 5756 Query 25350 TAGTAGAACCCATT 25363 || ||||| ||||| Sbjct 5757 TAATAGAAGCCATT 5770 >seq22953 Length=36863 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||| |||||||||||||| ||||| | | ||| | | || ||||| ||||| || Sbjct 14029 GTAGATTCCTTTTGAATATTATAATCAGATAATGTACGGCCATCTTCCAGTTGTTTTCCA 14088 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| |||| || ||||| ||||| ||| | ||||||||||| || || || Sbjct 14089 GCAAAAATCAGCCTCTGTTGATCTGGGGGAATACCCTCTTTGTCTTGGATCTTTGCCTTC 14148 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | ||| ||| ||| || || || | || |||||||| ||||| | ||| Sbjct 14149 ACATTTTCGATAGTGTCGGACGGTTCTACCTCTAAAGTGATGGTTTTTCCTGTAAGAGTC 14208 Query 19025 TTGACAAAAATTTGCATT 19042 || ||||| || |||||| Sbjct 14209 TTAACAAAGATCTGCATT 14226 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | ||||| || ||||| || |||||||||||||| | || || |||| || Sbjct 13332 CACTAAGTGCAGGGTTGACTCTTTCTGAATATTGTAATCAGACAAAGTGCGACCGTCTTC 13391 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 || ||||| || ||| |||| || | ||| || || ||| | |||||| || || Sbjct 13392 CAATTGTTTTCCAGCAAAAATGAGACGCTGTTGGTCTGGGGGGATGCCCTCCTTATCCTG 13451 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||||| ||| || | | | || || || || ||| | ||||||||| || Sbjct 13452 TATTTTAGCTTTGACATTCTCAATTGTGTCAGATGGTTCTACTTCCAGGGTAATGGTCTT 13511 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || ||||||||||| |||||||| Sbjct 13512 TCCAGTCAATGTTTTGACAAATATTTGCAT 13541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413744021037820