Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ethilla_20aerotome_20[genbank_20GCA_5F001485985.1_20201 5-12-17] 164,030 sequences; 282,526,854 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq20852 277 2e-69 seq20122 134 1e-26 seq22953 104 2e-17 seq5945 96.9 3e-15 >seq20852 Length=11699 Score = 277 bits (306), Expect = 2e-69 Identities = 765/1156 (66%), Gaps = 29/1156 (3%) Strand=Plus/Plus Query 55653 AAAGGCGGTCGATATATAATGACCGTAAAGCTATGCAACTCGGACGGATGCACTTCGAGT 55712 ||||| || |||| |||||| || | || ||||| ||||| |||| ||| ||| Sbjct 2002 AAAGGTGGAAGATACCAAATGACAGTGGAACTTTGCAATGACGACGGCTGCAGTTCAAGT 2061 Query 55713 CAAGCGGTCGAAGTTGTAATCGCAGATACGGACGGTTCTCATCTTGCTCCGCTCTATTAC 55772 | | |||| |||| | || ||||| || || |||| | |||| || | || Sbjct 2062 GATCCCACCGAAATTGTCGTGGCCGATACCGATGGAAGTCATTTACCTCCTCTAGAATAT 2121 Query 55773 GAATATCAGGAATTAAATCAACCTTTCGAAACGCGAGTCGTGGATAAAATCGTTGCCGCA 55832 || ||| |||| | || ||| || | || |||| ||| | || | || Sbjct 2122 ACATTGGGAGAAAAAAATAAGCCGTTC-AAGCAAACATC-TGGA-AAAGTTGTGGGTGCC 2178 Query 55833 TATTTTGTCGAGTGGGGTGTTTATCATAGAAACTTTCCTGTCACTCGAGTTCCCACTCCT 55892 || || || || |||||||| |||| ||| || || || || ||| | || | ||| Sbjct 2179 TACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTGGATCGTATACCTATACCT 2238 Query 55893 AATCTGTCACACATTCTCTACGGATTCATACCGATATGCGGCGGCGACGGCATTAACGAC 55952 ||||| | || | |||||||| || || || || |||||||| |||||||| || || Sbjct 2239 AATCTTACTCATTTGCTCTACGGCTTTATTCCAATTTGCGGCGGTGACGGCATCAATGAT 2298 Query 55953 AGTCTCAAGACGATAACCGGTAGTTTTGAAGCGCTTCAGCGATCGTGTTCGGGTCGAGAC 56012 ||| | || ||| || ||||| |||| || ||||| || ||| || || || Sbjct 2299 AGTTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTACAGCGGTCCTGTAGCGGCCGTGAG 2358 Query 56013 GACTTCAAAGTGTCGATTCATGACCCGTGGGCTGCGGTCCAAAAGCCCCAAAAACAAGTG 56072 ||||| ||||| || || || || || ||||| || | ||||| || |||||| | || Sbjct 2359 GACTTTAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGGATTG 2418 Query 56073 ACCGCATGGAACGAACCATACAAAGGCAACTTTGGACAATTGATGGCAGCTAAACTGGCG 56132 | |||||||||| || ||||||||||||||||| ||||| ||| || |||| || Sbjct 2419 TCTTCATGGAACGAGCCCTACAAAGGCAACTTTGGCCAATTAATGTCACTAAAACAAGC- 2477 Query 56133 AATCCCCATG--TTAAAG-TGCTGCCTTCGATCGGTGGCTGGACTTTATCCGATCC---G 56186 | || || || ||| | || || || || ||||| ||||| | ||||||| Sbjct 2478 --CCGCCCTGAATTGAAGATTCTTCCATCTATTGGTGGGTGGACGCTTGCCGATCCTTTC 2535 Query 56187 TTCTTTTACTTTCACGATGCGGTCAAACGCAAAATTTTTGTCGATTCTGTCGTCGAGTTT 56246 ||||||| || || | | || | | | ||||| | || || ||||| Sbjct 2536 TTCTTTTTAGTTGACAAATC---TAAGAGAACACGATTTGTGCAGTCAGTAAAGGAGTTC 2592 Query 56247 TTACAGACCTGGAAATTTTTCGATGGTGTCGACATCGACTGGGAGTTTCCCGGCGGAAAG 56306 | | || |||||||| ||||||||||| || ||||| |||||||| || || || || Sbjct 2593 CTTCTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGGCAAA 2652 Query 56307 GGGGCCAATTCCAACGTCGGCGATGCCGAACGCGATCGCAACACGTACACGATTCTGTTA 56366 || || || | || |||| | ||| ||| | | || | | || | Sbjct 2653 GGTGCTAACCCTGACCTCGGTAGCCCAGAA---GATGGTGATTGTTATGTAAGTTTGATG 2709 Query 56367 CGAGATTTACGCGAAGCGCTAGACCGA---CTAAGCCTCGAAACGAATCGAACATACGAG 56423 ||| ||||| || ||| || || || ||| ||| | | ||| |||||| Sbjct 2710 AAAGAATTACGTGAGATGCTCGA-TGAGCTCTCAGCTAAGAATGGTA-AGAA-ATACGAA 2766 Query 56424 CTAACCAGCGCCATTAGCGCCGGCGATGACAAAATCACGGTCGTCGACTACACAGCCGCT 56483 |||| || |||||||| || || |||||| || || |||||| ||| Sbjct 2767 TTAACTTCTGCTATTAGCGCTGGATGGGATAAAATCCAAGTTGTTGACTACGGCAAGGCT 2826 Query 56484 CAAAAATATTTAGATTATAtttttttGATGACATACGATTTTAAAGGCGCTTGGTCGAAT 56543 ||||| ||| | ||| ||||||| ||||||| ||||| || || || || ||||| ||| Sbjct 2827 CAAAATTATATGGATCATATTTTCTTGATGAGTTACGACTTCAAGGGAGCCTGGTCAAAT 2886 Query 56544 AGCGATCTGGGCTATCAGACGACTTTGTACGCGCCTGCGTTTAATCCTAAAGAACACTAT 56603 ||| || |||| ||| | |||||||||||||||| ||||| || ||| || Sbjct 2887 GATACTCTTGGACATCAAACGCCATTGTACGCGCCTGCGTGGAATCCCAAGGAAACTTAC 2946 Query 56604 ACGACCGATTTTGCGGT-TCGTGCTCTGCTTAAACAAAAAGTCGAGAATAAAAAGATTGT 56662 || | || || | || | || |||| || ||| | ||| |||||||| Sbjct 2947 ACATCTGACTTCGGAGTAAAATACT-TGCTGGCGCAGGGAGTGAATCCTAAGAAGATTGT 3005 Query 56663 AGTCGGCGTAGCTATGTACGGTCGCGGGTGGACCGGCGTCGGTGATTTCGTCGACAAAAA 56722 ||| || || |||||||| ||||| || ||||| ||||| ||||| | ||| || Sbjct 3006 AGTAGGTGTTGCTATGTATGGTCGTGGTTGGACTGGCGTTCATGATTACAAAGAC---AA 3062 Query 56723 CAATCCATTTTCCGGCACGGCCAAGGGACCTGTCAAAGGTACCTGGGAAGACGGAGTCGT 56782 || ||| || | |||| || | |||||||||||||| || ||| |||||||||| || Sbjct 3063 CATTCCCTTCACAGGCAACGCTACTGGACCTGTCAAAGGAACTTGGCAAGACGGAGTGGT 3122 Query 56783 TGATTTTAGAGAAATT 56798 ||| | || || ||| Sbjct 3123 TGACTACAGGGAGATT 3138 >seq20122 Length=23100 Score = 134 bits (148), Expect = 1e-26 Identities = 169/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| |||||| | ||||| ||| | |||||| | ||||| || || Sbjct 11314 ATGCAAATTTTTGTGAAAACACTGACTGGCAAAACTATTACCTTAGAAGTGGAAGCTTCT 11255 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | || || ||||||| |||||||||||||| ||||| |||||| Sbjct 11254 GACACAATCGAAAATGTTAAGGCAAAGATTCAGGACAAAGAAGGCATTCCTCCTGATCAA 11195 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAG--AAACGTCAGCGATTATA 24168 || |||||||||| || || |||||||| ||||||| | | |||| || |||| Sbjct 11194 CAAAGACTGATTTTCGCTGGAAAGCAACTGGAAGATGGGCGCACATTGTCA--GACTATA 11137 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 | || || || || ||||| | |||||||| || | | ||||| ||| Sbjct 11136 ATATCCAGAAGGAGTCTACTTTGCATTTAGTCTTGCGTCTAAGAGGTGGA 11087 Score = 129 bits (142), Expect = 5e-25 Identities = 177/244 (73%), Gaps = 5/244 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| |||||||| ||||| ||| | ||||| | ||||| || || Sbjct 10402 ATGCAAATTTTTGTGAAAACATTGACTGGCAAAACTATTACTTTGGAAGTAGAAGCTTCT 10343 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || ||||| | || || ||||||| ||||| |||||||| ||||| |||||| Sbjct 10342 GATACTATCGAAAATGTTAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAA 10283 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGATTATA 24168 || |||||||||| | ||| |||||||| ||||||| | | ||||| | |||| Sbjct 10282 CAAAGACTGATTTTTGCCGGAAAGCAACTGGAAGATGGGCGCACATTGTCAG--ACTATA 10225 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTATAATGAT 24228 | || || ||||||||||| |||| | || | ||| | ||||| || | ||| | | Sbjct 10224 ATATCCAGAAAGAATCTACCCTTCACCTTGTTCTCAGACTTAGAGGTGGTGTGTAAAG-T 10166 Query 24229 TCTT 24232 |||| Sbjct 10165 TCTT 10162 Score = 114 bits (126), Expect = 1e-20 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | |||||||||||| | ||||| ||| | ||||| | ||||| ||| | Sbjct 10630 ATGCAAATTTTTGTAAAAACACTTACTGGTAAAACTATTACTCTTGAAGTTGAGCCTTCT 10571 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || ||| ||| ||| || || || || || ||||| || ||| Sbjct 10570 GACACAATTGAAAATGTTAAAGCAAAAATTCAAGATAAGGAGGGGATTCCTCCAGACCAA 10511 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAAC-GTCAGCGATTATA 24168 ||||| || |||| || || || ||||| |||||| ||| | || |||| || || | Sbjct 10510 CAGAGGCTTATTTTCGCTGGAAAACAACTTGAAGATGGACGCACACTGTCA--GACTACA 10453 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||||| || |||||||| | |||||||| | | ||||||| || Sbjct 10452 ACATTCAGAAGGAATCTACTTTACATTTAGTACTTCGTCTGAGAGGTGG 10404 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | |||||||||||| | ||||| || | || || | ||||| ||| || Sbjct 11543 AATGCAAATATTTGTAAAAACACTGACTGGCAAGACTATCACACTGGAAGTTGAGCCCTC 11484 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | || || || ||| || || ||||| || ||||| || || Sbjct 11483 TGACACAATTGAAAATGTTAAGGCCAAAATTCAAGATAAGGAAGGAATTCCTCCAGACCA 11424 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAAC-GTCAGCGATTAT 24167 ||| || || |||| | || ||||| || |||||| ||| | || ||| || || Sbjct 11423 ACAAAGGCTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGTACACTGTC--TGACTAC 11366 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || ||||| || |||||||| | |||||||| | | ||||||| || Sbjct 11365 AATATTCAGAAGGAATCTACTTTACATTTAGTACTTCGTCTGAGAGGTGG 11316 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || ||||| ||| | ||||| || | || || | ||||| ||| | Sbjct 11771 AATGCAAATTTTCGTAAAGACACTGACTGGCAAGACTATCACTTTGGAAGTTGAGCCTTC 11712 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || || | || ||| || ||| || ||||| || || || || ||||| Sbjct 11711 TGATACAATTGAAAATGTTAAAGCGAAAATTCAGGATAAAGAGGGAATTCCCCCAGATCA 11652 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG-ACAGAAACGTCAGCGATTATA 24168 || ||||| |||| | || ||||| || ||||||| || | || | ||||| | Sbjct 11651 GCAAAGACTTATTTTTGCTGGAAAGCAGCTAGAAGATGGACGCACAC-TATCTGATTACA 11593 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||||| ||||||||||| | || |||| || | ||||||| ||| Sbjct 11592 ACATTCAGAAAGAATCTACTTTGCACCTAGTACTACGGCTGAGAGGTGGA 11543 >seq22953 Length=36863 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| || || | || |||||| | || || | || || || | Sbjct 14226 AATGCAGATCTTTGTTAAGACTCTTACAGGAAAAACCATCACTTTAGAGGTAGAACCGTC 14167 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||| ||||| | || || |||||| |||||||| || || || || ||||| Sbjct 14166 CGACACTATCGAAAATGTGAAGGCAAAGATCCAAGACAAAGAGGGTATTCCCCCAGATCA 14107 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 |||||| ||||||| | || || ||||| ||||||| | | || | | | ||||||| Sbjct 14106 ACAGAGGCTGATTTTTGCTGGAAAACAACTGGAAGATGGCCG-TACATTATCTGATTATA 14048 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 | |||||||| |||||||| | |||||||| || Sbjct 14047 ATATTCAAAAGGAATCTACCCTACATTTAGTATT 14014 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||||||||| | ||||| |||||| | || || ||| | ||||| | ||||| || | Sbjct 14457 CAAAATGCAGATCTTTGTGAAAACACTTACGGGTAAAACCATTACTTTGGAAGTTGAACC 14398 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 ||| || || || | || ||| || ||| ||||| |||||||| ||||| || Sbjct 14397 TTCCGATACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAGGAAGGCATTCCTCCAGA 14338 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 |||||| | |||||| || || |||||| | ||||| | | | | ||| || Sbjct 14337 TCAACAACGTTTGATTTTCGCTGGAAAGCAATTAGAAGACGGACGCACTCTTTCCGACTA 14278 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||| ||||||||||||||||| |||| || || || Sbjct 14277 TAATATTCAAAAAGAATCTACTCTTCACTTGGTATT 14242 >seq5945 Length=4136 Score = 96.9 bits (106), Expect = 3e-15 Identities = 335/515 (65%), Gaps = 11/515 (2%) Strand=Plus/Plus Query 132197 AGATGTTGATTTACTATTTGATATTCACCCGATAAGACTCTTCGTACGTACAAATTACTA 132256 ||||| || || |||| || |||| || ||||||||||||| | ||| | ||| Sbjct 1627 AGATGATGGTTCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGAT 1686 Query 132257 GTAAACGGCTCGAACGATTCGTTGTTTCCCAATATTTGAGCTGTCGTTGCCGTCGGCATG 132316 ||||| || || || ||||| |||| || | ||||| || || | || |||||||| Sbjct 1687 GTAAAGGGTTCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATA 1746 Query 132317 TAGGCAATCAATAATGAATTGCGCAGCCCGTGTATGGCCATTTGCCGTTTAAGCTCGTCC 132376 || ||||||| |||||||||| || ||| | || || | |||||| | || Sbjct 1747 GGAGCTATCAATAGAGAATTGCGCAAACCATGTTTTGCTATCTTTTCTTTAAGGACAGCC 1806 Query 132377 CAGTTCCACAGATCATTCGATTGAGAGATATTCCACAAATCAAACTGTAAATGACCGCTA 132436 |||| ||| || || | | ||| | | ||||| |||| |||| | ||| Sbjct 1807 CAGTCCCAAAGGTCTGTAG---GAGTTTTGTCCCACATATCATACTGGAGGATACCTTGG 1863 Query 132437 CTTGCAGGAGATCCGTTATAAGAATCGTATGCTCCGTGTAATTTGGCAAGTTCTATGCTC 132496 ||||| ||| || | ||| | |||||| || | | || || | ||| || Sbjct 1864 CTTGCTGGACTCCCTTGATATGTGCTGTATGCACCTTCTTTTTCAGCTAATTCACAACT- 1922 Query 132497 TGACTC-AGGGCACCATAATAAATAGTCTCTGAGATTTTTCTATTCAATTCCCTTGCTTG 132555 | || | |||||||||||||| || || | |||| | ||| | |||||| Sbjct 1923 AGCTTCTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTGAGAAGTATTGCTTT 1982 Query 132556 TTGACTGTCGTAGGGCAAATT-TAA--AATAGCGAACGCATCGGCAAGTCCCTGAATGCC 132612 | ||| ||||| | | ||| | | || | | |||||||| || | ||||||| || Sbjct 1983 CTCACTTTCGTAAG--ATATTCTCATCAACA-CAAACGCATCTGCCATGCCCTGAACACC 2039 Query 132613 GATACCGATGGGTCTATGTTTAAAATTCGATACTTGTGCGCTAGTCAGCGGATAAAAGTT 132672 ||||| || ||||||||| | | ||| || || ||| || | |||||||| || Sbjct 2040 AATACCAATAGGTCTATGTCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAATT 2099 Query 132673 TTTGTCTATTATTTTATTGAGATTGTTAGTGACAA 132707 || || | ||| || | ||| | ||| |||| Sbjct 2100 AACATCAATAACTTTGTTTAAATTTTGAGTTACAA 2134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429076508224650