Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ethilla_20aerotome_20[genbank_20GCA_5F001485985.1_20201 5-12-17] 164,030 sequences; 282,526,854 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq5945 558 4e-154 seq13889 141 1e-28 seq46256 122 1e-22 seq112584 107 2e-18 seq69558 107 2e-18 >seq5945 Length=4136 Score = 558 bits (618), Expect = 4e-154 Identities = 1196/1787 (67%), Gaps = 23/1787 (1%) Strand=Plus/Plus Query 46964 TAATTTGTCTTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATA 47023 || ||| |||| || |||||||||| ||| | ||| |||| |||||| ||||| || Sbjct 1278 TATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGTA 1337 Query 47024 ATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGA 47083 ||||| || || |||||||| | |||| | | |||||| || || | ||| Sbjct 1338 GTACATTCCTGTTTTTAAACCCATTTTCCAAGCGTGGAAATGAATCGACGTAAGTTTTCC 1397 Query 47084 ATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCT 47143 ||| |||||| | || ||| || |||| ||||||||| || || ||||| || ||||| Sbjct 1398 ATAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATAAAAGCTCCTCT 1457 Query 47144 ATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTG 47203 |||||||||||| | || || ||| ||||||||||| ||||| || | | Sbjct 1458 ATCAGCTGCCATCTGTATGGATGTTTTTAGTGAAATCTCCCATACGGTTTTGTACAAATC 1517 Query 47204 TTTAATGTCTTCTGGGAGATT---AGTATTTTGAATAGATCCTCCgttttctataatttt 47260 | | || |||| || | || | | | ||| |||||||| ||| | |||||| Sbjct 1518 TCTTATTTCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATAAG 1577 Query 47261 gttttttaa---ttcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGG 47317 |||||| | ||||| || || || ||| || | | ||||||| | Sbjct 1578 GTTTTTCATATCTTCATCCCACAAATCAGCCCG---AGTCAAATCAGTCAGAAGATGATG 1634 Query 47318 ATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGG 47377 || || | ||||||||||||||| ||||| | || ||||| |||| | || Sbjct 1635 GTTCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAGGG 1694 Query 47378 TTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAAC 47437 ||| | ||||||| | || |||| |||||| ||||| || || || ||||| | || | Sbjct 1695 TTCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGAGCTAT 1754 Query 47438 TAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCA 47497 |||| ||| | | |||| |||| ||||| ||| ||||| Sbjct 1755 CAATAGAGAATTGCGCAAACCATGTTTTGCTATCTTTTCTTTAAGGACAGCCCAGTCCCA 1814 Query 47498 AAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGA 47557 ||| |||| ||| | ||| | |||||| || || || |||| ||| ||| Sbjct 1815 AAGGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCTTGGCTTGCTGGACT 1874 Query 47558 ACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGC 47617 || | |||||| | || | ||| | | || ||| | ||||||||| ||||| ||||| Sbjct 1875 CCCTTGATATGTGCTGTATGCACCTTCTTTTTCAGCTAATTCACAACTAGCTTCTAATGC 1934 Query 47618 ACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTT-CTGATGATTCAA 47676 || |||||| |||||||||||||||| | || ||| |||||| || | ||| Sbjct 1935 ACCATAATAAATTGTTTCAAATATTTGTTGATTGAGAAGTATTGCTTTCTCACT-TTCGT 1993 Query 47677 AAGGATANNNNNNNNNNNNNAAT-GTATCTGCCAATCCTTGAACACCAATACCAATTGGT 47735 ||| ||| || | |||||||| || ||||||||||||||||| ||| Sbjct 1994 AAG-ATATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATACCAATAGGT 2052 Query 47736 CTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATT 47795 ||||| | |||| ||| | ||||| || | ||||| || | ||| |||| | Sbjct 2053 CTATGTCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAATTAACATCAATAACT 2112 Query 47796 TTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTG 47855 || |||| | |||||| ||||||| ||||||| ||| || Sbjct 2113 TTGTTTAAATTTTGAGTTACAATCTTTGTGATTTCTTTTAATTTTTTAAAATTAAATCTG 2172 Query 47856 TTATTTATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTT 47915 |||||| ||||||| | ||||||||||| || || || || || || || || |||| | Sbjct 2173 TTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCATCT 2232 Query 47916 GGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTT 47975 ||| ||||| | | |||| || ||||| | |||||| ||||| || | |||| Sbjct 2233 TCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCAAGATTT 2292 Query 47976 TGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCT 48035 | |||||| | ||||||| || ||||| || | ||| | ||||| ||||| || Sbjct 2293 TTTTGATTACTCTTTCTGTTACAAGCATCCTTATACAACATGTATGGTGTACCAGTCTCC 2352 Query 48036 ATCTGAGATTCAATGATAGATTTCCAAACAGTCCT-AGCCTTTATAACAGCTCTAGCTTT 48094 | || | ||| || || || ||||| | | || | ||| | | | || | Sbjct 2353 ACTTGGGCTTCTATAATCGACTTCCATA-ACTCTTGAGCTCTGACTTGTTTTATAAATCG 2411 Query 48095 ATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAA 48154 || || | ||| ||||| ||||||| | |||||||| || ||| | | | | | Sbjct 2412 TTTTTCTTCTTCATATTTGGTATATAGTTCTTCAAATTCCTCTCCAAAGCAGTCAGCGAG 2471 Query 48155 CCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCAT 48214 |||||||| |||| ||||||||| | |||| | ||||| |||| |||||| |||| Sbjct 2472 GCCAGGACAGTCATGAGGACACATGAGACTCCAAACTTCATCCTTTTCTACTCTTTTCAT 2531 Query 48215 AAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCC 48274 ||| | |||||||||||| | ||| ||| | || |||| ||| | |||||| || || Sbjct 2532 AAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCATTTCTTCCTTACC 2591 Query 48275 ACTATTCCT-TTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATA 48333 | ||| | ||||| | |||| || || | ||| || |||||||| || |||||||| | Sbjct 2592 TGTGTTCTTCTTTAAATCCAAG-AATTCAAATATGTCCGCATGCCAAGGCTCTAAATAAA 2650 Query 48334 TTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTAT 48393 |||| | | | || || ||||| || || |||||||||| |||||||||||||||||||| Sbjct 2651 TTGCAAATGCGCCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAGTATTGTTAT 2710 Query 48394 AAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTC 48453 | ||||| |||||||| || | ||||||||| | ||||| || || | || ||| | Sbjct 2711 ACACTCTCAACATTGGCACTAGACCATTTGAGACCCCATTAGTGCCAGCTATGTAAGAAC 2770 Query 48454 CACTAGCTCTTAT---ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTA 48510 | |||||| || || || || || |||||| ||||| || |||||| |||| Sbjct 2771 CCTGAGCTCTGATGCAATGTGTA--TGTAA-ACCTATGCCACCAGCAGATTTAGAAATTA 2827 Query 48511 GAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATA 48570 ||||| |||| | |||||| |||| ||||| || ||||| ||| ||||| || | Sbjct 2828 ATGCACATTGTTTTAAAGTATCAAAAATACCTTCAATGCTATCGTCTTTCATAGCTATAA 2887 Query 48571 GAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCAT 48630 | ||||| || | || || | || ||| || | ||| || ||||| Sbjct 2888 GGAAACAGGAGGAAAGCTGTGGCCGCGGTGTGGCTGCGGAGAACAGTGTAGGGCTTGCAT 2947 Query 48631 GAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATT 48690 | |||| |||||||||| | || ||||| || | || || ||| || || Sbjct 2948 GTGTAAAATATTTCTCTGACATCATATTATAAGTATTGATTGCACTATCAATGTCTTCAC 3007 Query 48691 GATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCA 48737 ||| || ||||| || || | ||| | ||| | |||||| |||||| Sbjct 3008 CATGAATGCCTATGGAGACTCTCATAAGCATGTGTTGAGGCCTTTCA 3054 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 48744 TTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTAT 48803 || || ||||| ||||| | ||||||| ||||||| ||||| |||||||||||||||||| Sbjct 3407 TTATTTTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAGTTGTAT 3466 Query 48804 GAAAAGTCGTTATCATTAATAATTGATGAATTTATTCTTTCCTTATGTTT 48853 ||| || |||||| || ||| | || | || | | ||||| | ||| Sbjct 3467 TTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTGTTTTT 3516 >seq13889 Length=23247 Score = 141 bits (156), Expect = 1e-28 Identities = 158/210 (75%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 19233 ATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAA 19292 ||||| || || |||||| |||||| |||||||||| |||||| ||||| || ||||| Sbjct 22898 ATATGTGTCAATTAATAAAGAGTACATCTCTGAATGAACATTTTCCATAGCAATTTGAAA 22839 Query 19293 TCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATT 19352 ||| || || || || ||||| || | || || || | || | || ||||| || Sbjct 22838 TCCATAGAAGCACCTGGCTTCAGTCACTTGAACCTCTTGTGAGAAACGCTCCACCAAGTT 22779 Query 19353 TTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTT 19412 |||||||| || |||||| ||||||||| |||||||| ||||| || ||||||||||| Sbjct 22778 CTCATTAACAATACCATCAGAAGCTGCAAAGAATGCTAAGACATGCTTGATAAAATGTTT 22719 Query 19413 TTC---ATCTGAGGTTAATGTATTCCAATC 19439 || |||| ||||||| | |||||| Sbjct 22718 CTCACAATCT---TTTAATGTCTCCCAATC 22692 Score = 96.9 bits (106), Expect = 4e-15 Identities = 84/103 (82%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 19442 TAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTAT 19501 ||||| ||| ||||| ||||||||||| | |||||||| || || || |||||||||| Sbjct 22542 TAATACCTTG-GATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTAT 22484 Query 19502 ACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 |||| | ||||||||| ||||||| || || |||||||| || Sbjct 22483 ACATCTGCCATATATCTGGATATTGGATTGGGAATATAACGAA 22441 >seq46256 Length=4484 Score = 122 bits (134), Expect = 1e-22 Identities = 249/365 (68%), Gaps = 9/365 (2%) Strand=Plus/Plus Query 136634 ATGACTCC--TATTAACCCAATGTTGGCAGAATCATGTGAATCTGTAGATAAAGCATTTA 136691 |||||||| ||||| |||||||| || ||| | || | || || || | || | | Sbjct 1330 ATGACTCCAGTATTA--CCAATGTTAGCTGAAGCTTGCAAGTCAGTTGAAATGGCTATGA 1387 Query 136692 AAAAGTTTCCAAATGGAATATTTGCAGAAATAAAATATGACGGAGAACGTGTACAGGTTC 136751 |||| | ||||||||| || ||| | || ||||||||||| |||||||| || || || | Sbjct 1388 AAAAATGTCCAAATGGCATGTTTTCTGAGATAAAATATGATGGAGAACGGGTTCAAGTCC 1447 Query 136752 ACAAGAATGGAAACCACTTTGCATTTTTTAGTAGAAACATGAAACCCGTAACAAAACATA 136811 | || || ||||| | || || |||| | | | ||||| |||| || | Sbjct 1448 ATAAAAAGGGAAATGAGTTCAAATATTTTTCCCGTGCCTTAAAACCGGTAATGGCTCACA 1507 Query 136812 AAGTTGATTATCTTAATGAGTATATACCTAAAGCCTTTAAAAATGTATCATCTCTT-ATT 136870 ||||| | || |||| || ||| |||||||||| ||| || | | || ||| ||| Sbjct 1508 AAGTTAGTCATTTTAAAGATTATTTACCTAAAGCATTTCCTAAAGGA-GATGACTTGATT 1566 Query 136871 TTAGATTCAGAAATAGTACTAGTAGATAAAAATAAT---AAACCATTACCATTTGGCAGT 136927 || ||| | ||| || | | || ||| |||| | |||||||| || || || | | Sbjct 1567 TTGGATGCTGAAGTACTTATGGTTGATGTCAATACTGGAAAACCATTGCCTTTCGGTACT 1626 Query 136928 TTGGGTATACATAAAAAGAAGGAATATAATGATTCATCACTATGTTTATTTGTATTTGAT 136987 || ||||| || ||| | |||| ||| ||| | | | || |||| | |||||||| Sbjct 1627 TTAGGTATTCACAAACAATCAGAATTTAAAGATGCTCAAGTTTGCTTATATATATTTGAT 1686 Query 136988 TGTTT 136992 || || Sbjct 1687 TGCTT 1691 >seq112584 Length=656 Score = 107 bits (118), Expect = 2e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| || ||| || | |||||| || || || || |||||||| |||| ||||| Sbjct 59 CCTCATCCCTAGAAATAAGTTCATTGCTGAAAGTCAATCCGGGCATCAGACCTCGTTTTT 118 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | ||||| ||||| |||||||| || || || ||||| || || || |||||||||| Sbjct 119 TCAACCAAAATATTGAAGCAAAGCTGCCTGAGAAAAATATTCCCTCAACCGCTGCAAAAG 178 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162 ||| || | ||||||| | |||| || | ||||| | | ||||| || | Sbjct 179 CAATTATACGTTCTCCAAATGTAGCCGTCTTGCTGCCGATCCACTGTAACGCCCAGTCTG 238 Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204 ||||||| || |||||||| | || || || | ||| |||| Sbjct 239 CCTTCTTCTTAACACATGGTAGAGTTTCAATTGCATTGAATA 280 >seq69558 Length=3257 Score = 107 bits (118), Expect = 2e-18 Identities = 246/365 (67%), Gaps = 9/365 (2%) Strand=Plus/Plus Query 136634 ATGACTCC--TATTAACCCAATGTTGGCAGAATCATGTGAATCTGTAGATAAAGCATTTA 136691 |||||||| ||||| || ||||| || ||| | || | || || || | || | | Sbjct 737 ATGACTCCAGTATTA--CCGATGTTAGCTGAAGCTTGCAAGTCAGTTGAAATGGCTATGA 794 Query 136692 AAAAGTTTCCAAATGGAATATTTGCAGAAATAAAATATGACGGAGAACGTGTACAGGTTC 136751 |||| | ||||||||| || ||| | || |||||||||||||||||||| || || || | Sbjct 795 AAAAATGTCCAAATGGTATGTTTTCTGAGATAAAATATGACGGAGAACGGGTTCAAGTCC 854 Query 136752 ACAAGAATGGAAACCACTTTGCATTTTTTAGTAGAAACATGAAACCCGTAACAAAACATA 136811 | || || ||||| | || || |||| | | | ||||| |||| || | Sbjct 855 ATAAAAAGGGAAATGAGTTCAAATATTTTTCCCGTGCCTTAAAACCAGTAATGGCTCACA 914 Query 136812 AAGTTGATTATCTTAATGAGTATATACCTAAAGCCTTTAAAAATGTATCATCTCTT-ATT 136870 ||||| | || |||| || ||| |||| ||||| ||| || | | || ||| ||| Sbjct 915 AAGTTAGTCATTTTAAAGATTATTTACCCAAAGCATTTCCTAAAGGA-GATGACTTGATT 973 Query 136871 TTAGATTCAGAAATAGTACTAGTAGATAAAAATAAT---AAACCATTACCATTTGGCAGT 136927 || ||| | ||| || | | || ||| |||| | || ||||| || || || | Sbjct 974 TTGGATGCTGAAGTACTTATGGTTGATGTCAATACTGGAAAGCCATTGCCTTTCGGTACA 1033 Query 136928 TTGGGTATACATAAAAAGAAGGAATATAATGATTCATCACTATGTTTATTTGTATTTGAT 136987 || ||||| || ||| | |||| ||| ||| | | | || |||| | |||||||| Sbjct 1034 TTAGGTATTCACAAACAATCAGAATTTAAAGATGCTCAAGTTTGCTTATATATATTTGAT 1093 Query 136988 TGTTT 136992 || || Sbjct 1094 TGCTT 1098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560956266169200