Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ethilla_20aerotome_20[genbank_20GCA_5F001485985.1_20201 5-12-17] 164,030 sequences; 282,526,854 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq66326 250 2e-61 seq20852 158 1e-33 seq20122 102 6e-17 seq19342 93.3 3e-14 seq22953 82.4 6e-11 >seq66326 Length=6876 Score = 250 bits (276), Expect = 2e-61 Identities = 372/520 (72%), Gaps = 22/520 (4%) Strand=Plus/Minus Query 103568 AACGGGTTCTTCTACTTGGGCCGCGGCGACGAAGTGCGCTGCGCGTTTTGCAAAGTGGAG 103627 || || |||| || ||||||||||||| ||||| |||||||||||||| ||||| || Sbjct 5770 AATGGCTTCTATTATCTGGGCCGCGGCGATGAAGTACGCTGCGCGTTTTGTAAAGTAGAA 5711 Query 103628 ATTATGCGCTGGGAGGAGGGCGACGACCCGGCTCGCGATCATCAGAGGTGGGCGCCGCAG 103687 |||||| |||| | ||| ||||| || || || || ||| | |||||||| ||| Sbjct 5710 ATTATGAAATGGGTTGCGGGTGACGATCCCGCCAAGGACCACCAGCGCTGGGCGCCCCAG 5651 Query 103688 TGTCCGTTCCTGaaaaaaaCGGCTG---CTGGC---GCGCTGCCCG---CCG-GCCTTGC 103737 || || |||||| ||| | ||||| | || || || ||| ||| | | Sbjct 5650 TGCCCCTTCCTGCGGCGGCAGGCGGAATCTGGCAACGTGCCGCGCGAGCCCGCGCCCT-C 5592 Query 103738 GATGG-AC-----GGGCAGGACGAGTGCGGCGTGAGCGCGCTGCCGTCCACCAACGCCTG 103791 | | | || || || |||||||||||||| |||||| ||| || | ||| | Sbjct 5591 GCTCGCACCCGCTGGCCACGACGAGTGCGGCGTCCGCGCGCCACCGCCCGC----GCCGG 5536 Query 103792 CGTGC-GCATGCCCGGCCCCGCGCACCCTCGGTTCGCCTCCGAGGCCTCAAGGTTACAAA 103850 || | ||||||||||||||| |||| | || | |||||||||||| | | | | | Sbjct 5535 CGCCCCGCATGCCCGGCCCCGTGCACGCGCGCTACGCCTCCGAGGCGGCCCGCCTGCGCA 5476 Query 103851 CTTTTAAGGATTGGCCCCGGAGTCTGAAACAGAAACCGGAGAAGATGGCCGAAGCCGGAT 103910 || | || ||||| || ||| |||| ||||| || ||| | | |||||||| |||| Sbjct 5475 GCTTCAGCGACTGGCCTCGCAGTATGAAGCAGAAGCCTGAGGAACTCGCCGAAGCGGGAT 5416 Query 103911 TCTACTACACCGGCCACAGCGACAACACGAAATGCTTCTACTGCGACGGTGGTCTAAAGG 103970 ||| |||||||||||| | ||||| || || ||||||||||| ||||| || || |||| Sbjct 5415 TCTTCTACACCGGCCAGGGTGACAAAACTAAGTGCTTCTACTGTGACGGCGGGCTCAAGG 5356 Query 103971 ATTGGGAGCACGATGATGAGCCGTGGCAACAACACGCGCTTTTCTTTCGCCGTTGCGCAT 104030 | |||||| |||| || | ||||||| | || ||||||| | || ||| ||||| | Sbjct 5355 ACTGGGAGAACGACGACGTGCCGTGGGAGCAGCACGCGCGCTGGTTCGACCGGTGCGCCT 5296 Query 104031 ACGTGCTACTTGTCAAGGGCCACGATTATGTACAAAAGGT 104070 |||||| || ||||| |||| || || || || ||||| Sbjct 5295 ACGTGCAGCTGGTCAAAGGCCGAGAGTACGTCCAGAAGGT 5256 >seq20852 Length=11699 Score = 158 bits (174), Expect = 1e-33 Identities = 637/992 (64%), Gaps = 31/992 (3%) Strand=Plus/Plus Query 29072 TGCGTATTTTGTAGAATGGGGCGTATATGGCCGCAACTTTCCGGTAGACAAAGTGCCGCT 29131 ||| || || ||||||||||| || ||| | || || || || || | || | Sbjct 2175 TGCCTACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTGGATCGTATACCTAT 2234 Query 29132 GCCCAACCTCTCGCATCTGTTGTACGGTTTCATACCTATTTGCGGCGGCGACGGGCTCAA 29191 || || || | ||| || | ||||| || || || ||||||||||| ||||| |||| Sbjct 2235 ACCTAATCTTACTCATTTGCTCTACGGCTTTATTCCAATTTGCGGCGGTGACGGCATCAA 2294 Query 29192 CGACGCCCTCAAAACCATTCCCGGCAGTTTTGAGGCGCTGCAACGCTCTTGCAAGGGCCG 29251 || | ||| || |||||||| | || || || || || || | ||||| Sbjct 2295 TGATAGTTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTACAGCGGTCCTGTAGCGGCCG 2354 Query 29252 TTCAGATTTCAAAGTCGCTATTCACGATCCGTGGGCCGCGATACAAAAACCGCAAAAGGG 29311 | || || |||||| | || |||||||| ||||| || |||||||||| ||||| || Sbjct 2355 TGAGGACTTTAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGG 2414 Query 29312 CGTGTCTGCGTGGAACGAGCCCTACAAAGGAAACTTCGGTCAGCTAATGGCGGCCAAGCT 29371 ||||| | |||||||||||||||||||| ||||| || || ||||| | || | Sbjct 2415 ATTGTCTTCATGGAACGAGCCCTACAAAGGCAACTTTGGCCAATTAATGTCACTAAAACA 2474 Query 29372 GGCCAATCCGCACCTCAAAATTCTGCCGTCCATCGGCGGCTGGACATTGTCCGACCC--- 29428 ||| || | | || ||||| || || || || || ||||| | |||| || Sbjct 2475 AGCCCGCCCTGAATTGAAGATTCTTCCATCTATTGGTGGGTGGACGCTTGCCGATCCTTT 2534 Query 29429 GTTCTATTTCATGCACGACGCGGAAAAACGGCGTGTGTTTGTGGACTCGGTCAGAGAATT 29488 |||| ||| | || | | | | | || |||||| | || || | || || Sbjct 2535 CTTCTTTTTAGTTGACAAATCTAAGAGAACACG---ATTTGTGCAGTCAGTAAAGGAGTT 2591 Query 29489 TCTGCAGGTGTGGAAGTTTTTTGACGGCGTGGACATAGACTGGGAGTTTCCGGGTGGCAA 29548 || | ||||| || || || || || || || || |||||||| || |||||||| Sbjct 2592 CCTTCTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGGCAA 2651 Query 29549 AGGCGCCAACCC-GACACTTGGCAACGGGGAGCGCGACGCCGACACGTATAACATTTTAC 29607 ||| || ||||| ||| || || | | || || | || ||| | ||| Sbjct 2652 AGGTGCTAACCCTGAC-CTCGGTAGCCCAGA---AGATGGTGATTGTTATGTAAGTTTGA 2707 Query 29608 TAAAGGAATTGCGCGCAATGATGGACGAGTTACAATTGCAAACGGGCAAAACGTACGAGT 29667 | || ||||| || | ||| | || ||| | | | | || || | ||||| | Sbjct 2708 TGAAAGAATTACGTGAGATGCTCGATGAGCTCTCAGCTAAGAATGGTAAGAAATACGAAT 2767 Query 29668 TGACAAGCGCAATCAGTTCCGGACATGACAAGATTGCTGTAGTTAAATACGACGCTGCGC 29727 | || || || || | ||| || || || || ||| | |||| | || | Sbjct 2768 TAACTTCTGCTATTAGCGCTGGATGGGATAAAATCCAAGTTGTTGACTACGGCAAGGCTC 2827 Query 29728 AAAAGTTTCTCGATAAAATATTCCTCATGAGCTACGATTTTAAAGGCGCGTGGTCAAACA 29787 |||| | | | ||| | || ||| | ||||| ||||| || || || || |||||||| Sbjct 2828 AAAATTATATGGATCATATTTTCTTGATGAGTTACGACTTCAAGGGAGCCTGGTCAAA-- 2885 Query 29788 CCGAT----TTGGGCTACCAAACTACTCTCTACGCGCCGAGTTGGAACCCAAACGAACTG 29843 ||| |||| | | ||||| | | |||||||| ||||| || || ||| Sbjct 2886 -TGATACTCTTGGAC-ATCAAACGCCATTGTACGCGCCTGCGTGGAATCCCAAGGAAACT 2943 Query 29844 TACAACACGGACCACGCCGTTA---AGTTGCTCACGAACCAGGGCGTGGACCCGCGCAAA 29900 |||| | ||| || || | | ||||| || ||||| ||| | || || Sbjct 2944 TACACATCTGACTTCGGAGTAAAATACTTGCTGGCG---CAGGGAGTGAATCCTAAGAAG 3000 Query 29901 ATTATTGTGGGCGTCGCCATGTACGGCCGCGGTTGGACAGGCGTGTCGGGTTATGACGGT 29960 ||| | || || || || ||||| || || |||||||| ||||| || | || || Sbjct 3001 ATTGTAGTAGGTGTTGCTATGTATGGTCGTGGTTGGACTGGCGT-TC--ATGATTACAAA 3057 Query 29961 GACAACTAT---TTTACGGGCACAGCTGCTGGGCCCGTGACCGGCACTTGGGAAGACGGC 30017 |||||| | || || |||| ||| |||| || || | || |||||| ||||||| Sbjct 3058 GACAACATTCCCTTCACAGGCAACGCTACTGGACCTGTCAAAGGAACTTGGCAAGACGGA 3117 Query 30018 GTTGTCGACTATCGCCAAATTGAAAACGAAAT 30049 || || ||||| | | |||| || ||||| Sbjct 3118 GTGGTTGACTACAGGGAGATTGCGAATGAAAT 3149 >seq20122 Length=23100 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||| ||||| | || |||||||| |||||| | ||| ||| ||| Sbjct 11314 ATGCAAATTTTTGTGAAAACACTGACTGGCAAAACTATTACCTTAGAAGTGGAAGCTTCT 11255 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || ||||||| || ||||||||| | || ||||| Sbjct 11254 GACACAATCGAAAATGTTAAGGCAAAGATTCAGGACAAAGAAGGCATTCCTCCTGATCAA 11195 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || ||||| |||| || || || || ||||| || | ||| || | ||||| || Sbjct 11194 CAAAGACTGATTTTCGCTGGAAAGCAACTGGAAGATGGGCGCACATTGTCAGACTATAAT 11135 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 || || ||||||||||| ||||| | || ||| | | |||| |||| Sbjct 11134 ATCCAGAAGGAGTCTACTTTGCATTTAGTCTTGCGTCTAAGAGGTGGAA 11086 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || || ||||||||||| || ||||| || || | ||| ||| ||| Sbjct 11998 ATGCAAATCTTCGTAAAAACTTTAACTGGGAAAACTATCACATTGGAAGTGGAAGCTTCT 11939 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | ||||| ||||||| || || |||||| | || ||||| Sbjct 11938 GATACAATCGAAAACGTAAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAA 11879 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || ||||| |||| || || || || ||||| || | ||| || | ||||| || Sbjct 11878 CAAAGACTGATTTTCGCCGGAAAGCAACTGGAAGATGGGCGCACACTGTCAGACTATAAT 11819 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 || || ||||| ||||| |||||| | |||||| | | || || |||| Sbjct 11818 ATCCAGAAGGAATCTACTTTGCACTTAGTGTTGCGTCTACGGGGTGGAA 11770 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||| ||||| || || |||||||| ||||| | ||| || ||| Sbjct 10402 ATGCAAATTTTTGTGAAAACATTGACTGGCAAAACTATTACTTTGGAAGTAGAAGCTTCT 10343 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| ||| | || || ||||||| || || |||||| | || ||||| Sbjct 10342 GATACTATCGAAAATGTTAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAA 10283 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || ||||| |||| ||| || || || ||||| || | ||| || | ||||| || Sbjct 10282 CAAAGACTGATTTTTGCCGGAAAGCAACTGGAAGATGGGCGCACATTGTCAGACTATAAT 10223 Query 107736 ATTCAAAAGGAGTCTAC 107752 || || || || ||||| Sbjct 10222 ATCCAGAAAGAATCTAC 10206 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/221 (69%), Gaps = 10/221 (5%) Strand=Plus/Minus Query 107543 TAAGAGGTTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGA 107602 |||||||| || ||||||||||||| || || | || || ||||| || || | || Sbjct 10869 TAAGAGGTGGAA--TGCAAATTTTTGTAAAGACACTGACTGGGAAAACTATCACTTTGGA 10812 Query 107603 AACGGAGGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGT 107662 | ||| ||| ||||| | | | || || ||| ||| |||||||| ||| | Sbjct 10811 AGTGGAAGCTTCTGATACAATTGAAAATGTTAAGGCAAAAATTCAGGATAAAGAGGGCAT 10752 Query 107663 GCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAA 107718 || || || ||||| || |||| ||| || |||||||| || |||||| | Sbjct 10751 TCCTCCAGACCAACAGAGGCTGATTTTTGCTGGCAAACAGCTAGAAGATGGACGC----A 10696 Query 107719 CAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCAC 107759 | || | ||||| || ||||||||||| ||||| |||||| Sbjct 10695 CTCTGTCTGACTATAATATTCAAAAGGAATCTACTTTGCAC 10655 Score = 87.8 bits (96), Expect = 1e-12 Identities = 171/252 (68%), Gaps = 12/252 (5%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||||||||| || || || | || ||||| || || || | ||| ||| || Sbjct 11771 AATGCAAATTTTCGTAAAGACACTGACTGGCAAGACTATCACTTTGGAAGTTGAGCCTTC 11712 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || ||| || ||| |||||||| || | ||| ||||| Sbjct 11711 TGATACAATTGAAAATGTTAAAGCGAAAATTCAGGATAAAGAGGGAATTCCCCCAGATCA 11652 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGACT 107730 ||| |||||||||| ||| || || ||||| || |||||| ||| | | || | Sbjct 11651 GCAAAGACTTATTTTTGCTGGAAAGCAGCTAGAAGATGGACGC----ACACTATCTGATT 11596 Query 107731 ACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATA 107790 |||||||||| || || ||||| |||||| | || | | || |||| || ||| Sbjct 11595 ACAACATTCAGAAAGAATCTACTTTGCACCTAGTACTACGGCTGAGAGGTGG----AATG 11540 Query 107791 AAAATATTTGTA 107802 ||||||||||| Sbjct 11539 CAAATATTTGTA 11528 >seq19342 Length=14378 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||||||||| ||||| || | || || |||||||||||| |||| |||||| Sbjct 4267 AATGCAAATTTTCGTCAAGACCCTTACGGGTAAAACCATTACCCTCGAGGTGGAGGCCTC 4208 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | |||||| || || ||||| ||||| | || || || Sbjct 4207 TGATACTATAGAAAATGTAAAAGCTAAAATCCAAGATAAGGAAGGTATTCCACCAGACCA 4148 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| | | || | ||| |||||||| || || || | ||| || | |||||||| Sbjct 4147 GCAACGTTTGATCTTTGCTGGTAAACAACTAGAAGATGGACGTACATTGTCTGACTACAA 4088 Query 107735 CATTCAAAAGGAGTCTACGTTGCA 107758 |||||||||||| || || ||||| Sbjct 4087 CATTCAAAAGGAATCCACATTGCA 4064 >seq22953 Length=36863 Score = 82.4 bits (90), Expect = 6e-11 Identities = 166/246 (67%), Gaps = 4/246 (2%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| |||||||| || |||||||||| || || || | ||| |||| | Sbjct 13769 ATGCAAATATTTGTCAAGACACTAACAGGCAAGACTATAACTCTGGAAGTGGAGCCATCT 13710 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | ||||| |||||| |||||||| || | ||| ||||| Sbjct 13709 GACACCATTGAAAATGTAAAGGCTAAGATTCAAGATAAAGAGGGTATTCCCCCAGATCAA 13650 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || | ||||| | ||| || |||||||| || || | || || | ||||||||| Sbjct 13649 CAACGTCTTATCTTTGCTGGCAAACAGCTAGAAGATGGTCGCACCCTGTCTGACTACAAC 13590 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAAAAT 107795 || ||||| |||||||| | || | || || | ||||||| || || |||| Sbjct 13589 ATCCAAAAAGAGTCTACTCTTCATTTAGTACTGCGTCTGCGAGGTGG----TATGCAAAT 13534 Query 107796 ATTTGT 107801 |||||| Sbjct 13533 ATTTGT 13528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398079399156670