Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ethilla_20aerotome_20[genbank_20GCA_5F001485985.1_20201 5-12-17] 164,030 sequences; 282,526,854 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq20852 358 6e-94 seq20122 105 6e-18 seq22953 104 2e-17 >seq20852 Length=11699 Score = 358 bits (396), Expect = 6e-94 Identities = 926/1390 (67%), Gaps = 42/1390 (3%) Strand=Plus/Plus Query 59754 TCTAAAGGCGGTCGATATAAAAATGACCGTCAAACTATGTAATTCGGACGGATGCACTTC 59813 || ||||| || |||| ||| |||| || |||| || ||| ||||| |||| ||| Sbjct 1999 TCGAAAGGTGGAAGATACCAAA-TGACAGTGGAACTTTGCAATGACGACGGCTGCAGTTC 2057 Query 59814 GAGTCAGCCGGTCGATGTTGTCATTGCAGATACCGACGGCTCTCATCTCGCTCCGTTATA 59873 ||| | || ||| ||||| | || |||||||| || |||| | |||| || | Sbjct 2058 AAGTGATCCCACCGAAATTGTCGTGGCCGATACCGATGGAAGTCATTTACCTCCTCTAGA 2117 Query 59874 TTATGAATATCAAGAACTGAACCAGCCCTTCGAAAGTCGAGTAGTGGATAAAGTCGTTGC 59933 ||| || |||| || |||| ||| ||| | |||| ||||| || | Sbjct 2118 ATATACATTGGGAGAAAAAAATAAGCCGTTC--AAGCAAACATCTGGA-AAAGTTGTGGG 2174 Query 59934 CGCATATTTTGTCGAATGGGGTGTTTATCCTAGAAATTTTCCTGTAGATCGAGTGCCCAC 59993 || || || || ||||||||||| |||||||| || || || || ||||| | || | Sbjct 2175 TGCCTACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTGGATCGTATACCTAT 2234 Query 59994 TCCTAATCTATCGCATATTCTATACGGATTTATTCCGATATGCGGCGGCGACGGTATCAA 60053 |||||||| | ||| | || ||||| |||||||| || |||||||| ||||| ||||| Sbjct 2235 ACCTAATCTTACTCATTTGCTCTACGGCTTTATTCCAATTTGCGGCGGTGACGGCATCAA 2294 Query 60054 CGACAGTCTTAAAACCATAACCGGTAGTTTCGAAGCGCTTCAGCGATCGTGTTCAGGTCG 60113 || ||| | ||| || || |||||| |||| || ||||| || ||| || || Sbjct 2295 TGATAGTTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTACAGCGGTCCTGTAGCGGCCG 2354 Query 60114 AGACGACTTTAAAGTATCAATTCACGATCCATGGGCCGCCGTCCAGAAACCCCAAAAACA 60173 || ||||||||||| ||||| |||||||||||||| || | || ||||| |||||| Sbjct 2355 TGAGGACTTTAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGG 2414 Query 60174 AGTAACCGCTTGGAACGAACCATACAAAGGTAATTTCGGACAATTAATGGCAGCCAAACT 60233 | | | | |||||||| || |||||||| || || || ||||||||| || |||| Sbjct 2415 ATTGTCTTCATGGAACGAGCCCTACAAAGGCAACTTTGGCCAATTAATGTCACTAAAACA 2474 Query 60234 GGCAAATCCCCACATCAAAGTGTTGCCCTCGATCGGAGGTTGGACTCTATCCGATCCGTT 60293 || || | | || | | || || || || || ||||| || ||||||| || Sbjct 2475 AGCCCGCCCTGAATTGAAGATTCTTCCATCTATTGGTGGGTGGACGCTTGCCGATCCTTT 2534 Query 60294 CTTTTACTTTCACGATACGGATAAACGA--AAGATTTTTGTAGATTCTGTCGTGGAGTTT 60351 ||| | || || | ||| || | ||||| || || || || |||||| Sbjct 2535 CTTCTTTTTAGTTGACAAATCTAAGAGAACACGATTTGTGCAG--TCAGTAAAGGAGTTC 2592 Query 60352 CTACAGACGTGGAAATTTTTCGACGGTGTCGACATCGACTGGGAGTTTCCCGGCGGAAAA 60411 || | || |||||||| ||||| ||||| || ||||| |||||||| || || || ||| Sbjct 2593 CTTCTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGGCAAA 2652 Query 60412 GGTGCCAATCCCAACGTAGGCGACGCCGAACGCGATCGCGAAACGTACACCATTCTGTTG 60471 ||||| || || || | || | | ||| ||| | || || | | || || Sbjct 2653 GGTGCTAACCCTGACCTCGGTAGCCCAGAA---GATGGTGATTGTTATGTAAGTTTGATG 2709 Query 60472 AAAGATTTACGCGAGGCGCTAGATCGATTAACCCTC-GAAACGAATCGAACG---TACGA 60527 ||||| ||||| ||| || ||||| | | ||| | | |||| | | | ||||| Sbjct 2710 AAAGAATTACGTGAGATGC----TCGATGAGCTCTCAGCTAAGAATGGTAAGAAATACGA 2765 Query 60528 GTTGACCAGCGCAATTAGCGCCGGCGATGACAAAATCGCCGTCGTCGACTACACCGCTGC 60587 || || || |||||||| || || |||||| || || |||||| | || Sbjct 2766 ATTAACTTCTGCTATTAGCGCTGGATGGGATAAAATCCAAGTTGTTGACTACGGCAAGGC 2825 Query 60588 TCAAGAATATTTAGATTTAAtttttttGATGACGTACGATTTTAAAGGAGCCTGGTCGAA 60647 |||| | ||| | ||| ||||| ||||||| ||||| || || ||||||||||| || Sbjct 2826 TCAAAATTATATGGATCATATTTTCTTGATGAGTTACGACTTCAAGGGAGCCTGGTCAAA 2885 Query 60648 TAACGATCTGGGCTATCAGACTACTCTATACGCTCCTTCGTTTAATCCTAAAGAACATTA 60707 | | ||| || |||| || | | ||||| ||| ||| ||||| || ||| ||| Sbjct 2886 TGATACTCTTGGACATCAAACGCCATTGTACGCGCCTGCGTGGAATCCCAAGGAAACTTA 2945 Query 60708 TACTACCGATTTTGCCGT-TCGTGCTCTACTCAAGCAAAAAGTCGAGAATaaaaaaaTTA 60766 || | || || | || | || | || ||| ||| | ||| || ||| Sbjct 2946 CACATCTGACTTCGGAGTAAAATACT-TGCTGGCGCAGGGAGTGAATCCTAAGAAGATTG 3004 Query 60767 TTGTCGGCGTGGCCATGTACGGTCGCGGCTGGACCGGCGTAAGCGATTTTGTTGACGATA 60826 | || || || || ||||| ||||| || ||||| ||||| |||| | || | Sbjct 3005 TAGTAGGTGTTGCTATGTATGGTCGTGGTTGGACTGGCGTTCATGATT---ACAAAGACA 3061 Query 60827 ATAATCCATTTTCCGGAACGGCCAAGGGACCGGTCAAAGGAACATGGGAAGACGGAGTCG 60886 | | ||| || | || | || | ||||| ||||||||||| ||| |||||||||| | Sbjct 3062 ACATTCCCTTCACAGGCAACGCTACTGGACCTGTCAAAGGAACTTGGCAAGACGGAGTGG 3121 Query 60887 TCGACTATAGAGAGATTTTCAAT-AATTTCGTC--GCCAATAACCCGATGGAAT---ATT 60940 | ||||| || |||||| ||| || || || | ||| | ||| | ||| Sbjct 3122 TTGACTACAGGGAGATTGCGAATGAAATTGCTCAAGGCAA------GTGGGAGTTCCATT 3175 Query 60941 ACGATTCCGTTGCAAAAGCGGCGTACGTCTTTAATAAC-TCGACCGGCGAGCTCATCACT 60999 |||| || || |||| | ||||| ||| | | | || || || || || | || Sbjct 3176 ACGACAATGTCGCCCAAGCCCCCTACGT-TTTCAGACCATCAACTGGAGATCTTGTAACC 3234 Query 61000 TACGACAATCCTCGGTCGGTTCTGGATAAAGCAAAATATGTATTGGACTA--TAGCTTGG 61057 || || ||| || | || ||| | || || | ||||||||| | | || ||| | | Sbjct 3235 TATGATAATGCTAGATCCGTTATTGAAAAGGGTAAATATGTA-AGAAATAACAAGC-TAG 3292 Query 61058 GTGGTTTGTTCGCTTGGGAGATCGACGCCGACAACGGATTACTTCTAAACGCCATGAACA 61117 | ||| | || |||||||| | ||||| || ||||| || || || |||||||||| Sbjct 3293 GAGGTCTCTTTGCTTGGGAAGTGGACGCTGATAACGGTGACCTACTGAATGCCATGAACA 3352 Query 61118 GCGGTCTCGG 61127 |||||||| Sbjct 3353 TGGGTCTCGG 3362 >seq20122 Length=23100 Score = 105 bits (116), Expect = 6e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| |||||||| || || ||| | || || | ||||| ||||| Sbjct 10402 ATGCAAATTTTTGTGAAAACATTGACTGGCAAAACTATTACTTTGGAAGTAGAAGCTTCT 10343 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||||||||| | || || ||| ||| || || || || || || || ||||| Sbjct 10342 GATACTATCGAAAATGTTAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAA 10283 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAATGTCAGCGATTACA 25352 |||||||| |||| | ||| || ||||| ||||||| | | ||||| || || | Sbjct 10282 CAAAGACTGATTTTTGCCGGAAAGCAACTGGAAGATGGGCGCACATTGTCA--GACTATA 10225 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||| || |||||||| ||| |||| | || | ||| | ||||| || Sbjct 10224 ATATCCAGAAAGAATCTACCCTTCACCTTGTTCTCAGACTTAGAGGTGG 10176 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | |||||||| ||| | || || ||| | ||||| | ||||| ||||| Sbjct 10858 ATGCAAATTTTTGTAAAGACACTGACTGGGAAAACTATCACTTTGGAAGTGGAAGCTTCT 10799 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || ||||||| ||||||||||| || || || || || Sbjct 10798 GATACAATTGAAAATGTTAAGGCAAAAATTCAGGATAAAGAGGGCATTCCTCCAGACCAA 10739 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || || |||| | |||||||| || ||||||| | | | | || || ||| Sbjct 10738 CAGAGGCTGATTTTTGCTGGCAAACAGCTAGAAGATGGACGCACTCTGTCTGACTATAAT 10679 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 |||||||| ||||| || | || ||||| Sbjct 10678 ATTCAAAAGGAATCTACTTTGCACTTAGT 10650 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | |||||||||||| | || || ||| | || || | ||||| | |||| | Sbjct 10630 ATGCAAATTTTTGTAAAAACACTTACTGGTAAAACTATTACTCTTGAAGTTG-AGCCTTC 10572 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || ||| ||||||| ||||| ||||| || || || || || Sbjct 10571 TGACACAATTGAAAATGTTAAAGCAAAAATTCAAGATAAGGAGGGGATTCCTCCAGACCA 10512 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAATGTCAGCGATTAC 25351 || || || |||| || || |||||||| ||||||| | | ||||| || ||| Sbjct 10511 ACAGAGGCTTATTTTCGCTGGAAAACAACTTGAAGATGGACGCACACTGTCA--GACTAC 10454 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||| || ||||| || | |||||||| | | ||||||| || Sbjct 10453 AACATTCAGAAGGAATCTACTTTACATTTAGTACTTCGTCTGAGAGGTGG 10404 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || ||||| ||| | || || || | ||||| | ||||| || ||| | Sbjct 11770 ATGCAAATTTTCGTAAAGACACTGACTGGCAAGACTATCACTTTGGAAGTTGA-GCCTTC 11712 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || || | || ||| |||||| ||||||||||| || || || ||||| Sbjct 11711 TGATACAATTGAAAATGTTAAAGCGAAAATTCAGGATAAAGAGGGAATTCCCCCAGATCA 11652 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||||||||| |||| | || || || || ||||||| | | | |||||||| Sbjct 11651 GCAAAGACTTATTTTTGCTGGAAAGCAGCTAGAAGATGGACGCACACTATCTGATTACAA 11592 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||||| |||||||| || | || |||| || | ||||||| |||| Sbjct 11591 CATTCAGAAAGAATCTACTTTGCACCTAGTACTACGGCTGAGAGGTGGAA 11542 >seq22953 Length=36863 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | |||||||| ||| | || || ||| | ||||| | ||||| ||| || Sbjct 13085 ATGCAGATCTTTGTAAAGACACTGACAGGGAAAACTATCACATTAGAAGTTGAACCCTCA 13026 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| || | || ||| || || || ||||||||||| || || ||||| Sbjct 13025 GACACTATTGAAAATGTTAAAGCCAAGATCCAAGACAAAGAGGGTATTCCCCCAGATCAA 12966 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | ||||||| || ||||| || || || |||| | | | || || |||||| Sbjct 12965 CAACGTCTCATTTTCGCTGGCAAGCAGCTGGAGGATGGCCGTACTCTCTCTGACTACAAT 12906 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||| ||||| ||||| | || || || ||| | || ||||||| Sbjct 12905 ATTCAGAAAGAGTCCACTTTGCACTTGGTATTACGTTTACGAGGAGG 12859 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| |||||||| || ||||| | || || | ||||| ||| ||| | Sbjct 13541 ATGCAAATATTTGTCAAAACATTGACTGGAAAGACCATTACCCTGGAAGTAGAA-CCATC 13483 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || ||| | || ||| ||||| ||||| ||||| || || || || || Sbjct 13482 TGACACAATTGAGAATGTCAAAGCTAAAATACAGGATAAGGAGGGCATCCCCCCAGACCA 13423 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 || | ||||||| | || |||||| | ||||| | | | | | | |||||||| Sbjct 13422 ACAGCGTCTCATTTTTGCTGGAAAACAATTGGAAGACGGTCGCACTTTGTCTGATTACAA 13363 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTG 25384 |||||| ||||| || ||| | || |||||| Sbjct 13362 TATTCAGAAAGAGTCAACCCTGCACTTAGTG 13332 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || | || |||||| | ||||| | || || ||| | | Sbjct 14225 ATGCAGATCTTTGTTAAGACTCTTACAGGAAAAACCATCACTTTAGAGGTAGAACCGTCC 14166 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || |||||||| | || || ||| || || ||||||||||| || || ||||| Sbjct 14165 GACACTATCGAAAATGTGAAGGCAAAGATCCAAGACAAAGAGGGTATTCCCCCAGATCAA 14106 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || || |||| | || |||||||| ||||||| | | | ||||| ||| Sbjct 14105 CAGAGGCTGATTTTTGCTGGAAAACAACTGGAAGATGGCCGTACATTATCTGATTATAAT 14046 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||||||| ||||| ||| | |||||||| || Sbjct 14045 ATTCAAAAGGAATCTACCCTACATTTAGTATT 14014 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || ||| |||| || || | || || | ||||| || |||| | Sbjct 13769 ATGCAAATATTTGTCAAGACACTAACAGGCAAGACTATAACTCTGGAAGTGGA-GCCATC 13711 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | ||||| || ||| |||||||||||||| || || ||||| Sbjct 13710 TGACACCATTGAAAATGTAAAGGCTAAGATTCAAGATAAAGAGGGTATTCCCCCAGATCA 13651 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTAC 25351 ||| | || || | | |||||||| || ||||||| | | | |||| || ||| Sbjct 13650 ACAACGTCTTATCTTTGCTGGCAAACAGCTAGAAGATGGTCGCACCCTGTC--TGACTAC 13593 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGT 25383 || || |||||||| || || |||||||||| Sbjct 13592 AACATCCAAAAAGAGTCTACTCTTCATTTAGT 13561 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | ||||| |||||| | || || ||| | || || | ||||| ||| | Sbjct 14457 CAAAATGCAGATCTTTGTGAAAACACTTACGGGTAAAACCATTACTTTGGAAGTTGAACC 14398 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 ||||||||| || | |||||| |||||| || || || || || || || || Sbjct 14397 TTCCGATACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAGGAAGGCATTCCTCCAGA 14338 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 ||| ||| | | |||| || || || ||| | ||||| | | | | | ||| || Sbjct 14337 TCAACAACGTTTGATTTTCGCTGGAAAGCAATTAGAAGACGGACGCACTCTTTCCGACTA 14278 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 ||||||||||||||||| || |||| || || || Sbjct 14277 TAATATTCAAAAAGAATCTACTCTTCACTTGGTATT 14242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444181789569600