Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ethilla_20aerotome_20[genbank_20GCA_5F001485985.1_20201 5-12-17] 164,030 sequences; 282,526,854 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq20122 129 4e-25 seq22953 122 5e-23 seq66326 100 2e-16 seq19342 100 2e-16 >seq20122 Length=23100 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | || ||||| | ||| ||||| |||||||| || ||||| Sbjct 10404 CCACCTCTCAGACGAAGTACTAAATGTAAAGTAGATTCCTTCTGAATGTTGTAGTCTGAC 10463 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | |||||||||||||| || || || || | | ||||||||| || || Sbjct 10464 AGTGTGCGTCCATCTTCAAGTTGTTTTCCAGCGAAAATAAGCCTCTGTTGGTCTGGAGGA 10523 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||| ||| ||| ||||| |||||| | ||||||||| ||| || Sbjct 10524 ATCCCCTCCTTATCT-TGAATTTTTGCTTTAACATTTTCAATTGTGTCAGAAGGCTCAAC 10582 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || |||||||| || | ||||| |||||||| ||||| Sbjct 10583 TTCAAGAGTAATAGTTTTACCAGTAAGTGTTTTTACAAAAATTTGCAT 10630 Score = 109 bits (120), Expect = 3e-19 Identities = 160/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||||||| || || | ||| ||||| || || ||||| ||||| ||||| ||| Sbjct 11781 AGACGCAACACTAAGTGCAAAGTAGATTCCTTCTGGATATTATAGTCTGACAGTGTGCGC 11840 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| ||||| || ||||| || || | | ||||| || || || | || ||| Sbjct 11841 CCATCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGAATGCCTTCC 11900 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTC-TTCGCTCTCCACTTCCACGGT 34667 |||||| |||||| |||| | ||||| || ||| |||||||||| || Sbjct 11901 TTGTCTTGAATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGCT-TCCACTTCCAATGT 11959 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 || ||||| || ||||| ||||| || || || |||||| ||| Sbjct 11960 GATAGTTTTCCCAGTTAAAGTTTTTACGAAGATTTGCATGATGA 12003 Score = 105 bits (116), Expect = 4e-18 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| |||||||| || ||||| | ||| |||||| || || ||||| ||||| Sbjct 11088 CCACCTCTTAGACGCAAGACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCTGAC 11147 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| ||| | ||||| ||||| || || || || || | | ||||| || || || Sbjct 11148 AATGTGCGCCCATCTTCCAGTTGCTTTCCAGCGAAAATCAGTCTTTGTTGATCAGGAGGA 11207 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTC-GCTCTCCA 34657 | || || ||||| |||||| | ||||| | |||||||| ||| |||| Sbjct 11208 ATGCCTTCTTTGTCCTGAATCTTT-GCCTTAACATTTTCGATTGTGTCAGAAGCT-TCCA 11265 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | ||| || ||||| || || | |||||||||||||| ||||| Sbjct 11266 CTTCTAAGGTAATAGTTTTGCCAGTCAGTGTTTTCACAAAAATTTGCAT 11314 Score = 102 bits (112), Expect = 5e-17 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||||| || || || | ||| ||||||||||| ||||| || || Sbjct 10632 CCACCTCTTAGACGCAGAACTAAGTGCAAAGTAGATTCCTTTTGAATATTATAGTCAGAC 10691 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || ||||| || ||||| || | | ||||||||| || || Sbjct 10692 AGAGTGCGTCCATCTTCTAGCTGTTTGCCAGCAAAAATCAGCCTCTGTTGGTCTGGAGGA 10751 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTC-TTCGCTCTCCA 34657 | ||||| || || ||| ||||| ||||| | |||||| || ||| |||| Sbjct 10752 ATGCCCTCTTTATC-CTGAATTTTTGCCTTAACATTTTCAATTGTATCAGAAGCT-TCCA 10809 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || || ||||| || || | || || |||||||| ||||| Sbjct 10810 CTTCCAAAGTGATAGTTTTCCCAGTCAGTGTCTTTACAAAAATTTGCAT 10858 Score = 86.0 bits (94), Expect = 4e-12 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 || || || || ||||| ||||| | ||| ||| | ||||| ||||| || |||||||| Sbjct 10212 TCTTTCTGGATATTATAGTCTGACAATGTGCGCCCATCTTCCAGTTGCTTTCCGGCAAAA 10271 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || | | ||||| || || || | || ||||||||| |||||| | ||||| | Sbjct 10272 ATCAGTCTTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTTT-GCCTTAACATT 10330 Query 34636 AAA-ATTGTGTCTTC-GCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 || || || ||| || ||||||| || || ||||| || || || ||||||| Sbjct 10331 TTCGATAGTATCAGAAGCT-TCTACTTCCAAAGTAATAGTTTTGCCAGTCAATGTTTTCA 10389 Query 34694 CAAAAATCTGCAT 34706 ||||||| ||||| Sbjct 10390 CAAAAATTTGCAT 10402 >seq22953 Length=36863 Score = 122 bits (134), Expect = 5e-23 Identities = 169/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||||||||| ||||| || ||||| || |||||||| ||||| || ||| Sbjct 14227 CCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCGGAA 14286 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| | ||| || || || || || ||||| ||||| || || || Sbjct 14287 AGAGTGCGTCCGTCTTCTAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGA 14346 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| ||| ||| | ||| || | ||| || || || || Sbjct 14347 ATGCCTTCCTTGTCT-TGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAAC 14405 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT 34712 ||||| || || |||||||| || | ||||||||||| |||||||| ||||| Sbjct 14406 TTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTTGAT 14459 Score = 102 bits (112), Expect = 5e-17 Identities = 160/222 (72%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||| || || || || ||| || ||||| || ||||| || | || || Sbjct 13324 AGACGAAGCACTAAGTGCAGGGTTGACTCTTTCTGAATATTGTAATCAGACAAAGTGCGA 13383 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| | |||||| || ||||| || | |||||||||||| || || | |||||| Sbjct 13384 CCGTCTTCCAATTGTTTTCCAGCAAAAATGAGACGCTGTTGGTCTGGGGGGATGCCCTCC 13443 Query 34609 TTGT-CTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC--TTCGCTCTCCACTTCCAC 34664 || | |||| || ||| | ||| || | ||||||||| | | ||| ||||||| Sbjct 13444 TTATCCTGT-AT-TTTAGCTTTGACATTCTCAATTGTGTCAGATGGTTCT--ACTTCCAG 13499 Query 34665 GGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| || || || || || || ||||| ||||| || ||||| Sbjct 13500 GGTAATGGTCTTTCCAGTCAATGTTTTGACAAATATTTGCAT 13541 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||||| || ||||| ||||| ||| ||||| ||||| || || || Sbjct 13543 CCACCTCGCAGACGCAGTACTAAATGAAGAGTAGACTCTTTTTGGATGTTGTAGTCAGAC 13602 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || ||||| || ||||| || | ||| ||||| || || || Sbjct 13603 AGGGTGCGACCATCTTCTAGCTGTTTGCCAGCAAAGATAAGACGTTGTTGATCTGGGGGA 13662 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||||| || ||| ||||| |||| | ||| ||||| ||||||| Sbjct 13663 ATACCCTCTTTATCTTGAATCTTAGCCTTTACATTTTCAATGGTGTCAGATGGCTCCACT 13722 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||||| || || || |||| || || ||||| || ||||| Sbjct 13723 TCCAGAGTTATAGTCTTGCCTGTTAGTGTCTTGACAAATATTTGCAT 13769 Score = 98.7 bits (108), Expect = 6e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||| ||||| || ||||| || || ||||||||||| |||||||| || Sbjct 13999 CCGCCACGAAGCCGCAATACTAAATGTAGGGTAGATTCCTTTTGAATATTATAATCAGAT 14058 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | ||||| |||||||| || ||||| || | | |||||| || || || Sbjct 14059 AATGTACGGCCATCTTCCAGTTGTTTTCCAGCAAAAATCAGCCTCTGTTGATCTGGGGGA 14118 Query 34600 ACTCCCTCCTTGTCTGTGATCTTT 34623 | ||||| |||||| ||||||| Sbjct 14119 ATACCCTCTTTGTCTTGGATCTTT 14142 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | || ||||| | ||| || ||||| |||||||| || || Sbjct 12631 CCACCACGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTATAGTCCGAC 12690 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || | |||||||| ||||| || | |||||||||||| || || Sbjct 12691 AGAGTGCGGCCATCCTCCAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGA 12750 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| |||| || | ||||| | || ||||| |||||| Sbjct 12751 ATGCCCTCCTTGTCTTGGATC-TTAGCCTTAACATTTTCGATAGTGTCAGATGGCTCCAC 12809 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || || || || | || || || || |||||||| Sbjct 12810 CTCCAAAGTGATGGTCTTCCCAGTAAGAGTCTTAACGAAGATCTGCAT 12857 >seq66326 Length=6876 Score = 100 bits (110), Expect = 2e-16 Identities = 127/173 (73%), Gaps = 4/173 (2%) Strand=Plus/Minus Query 46826 GGATGGCCCGTCAC--TTTTATTACACCCGAAGTGATGGCACGTAACGGATTTTATTATC 46883 |||||||||||||| ||||||| ||||||| | || | || || || ||||||| Sbjct 5812 GGATGGCCCGTCACATTTTTATT--ACCCGAATCACTCGCGAGGAATGGCTTCTATTATC 5755 Query 46884 TTGGAAGAGGTGATGAAGTTCGATGCGCCTTTTGCAAGGTTGAGATCATGCGTTGGGAAG 46943 | || | || |||||||| || ||||| ||||| || || || || ||| |||| | Sbjct 5754 TGGGCCGCGGCGATGAAGTACGCTGCGCGTTTTGTAAAGTAGAAATTATGAAATGGGTTG 5695 Query 46944 AGGGTGATGATCCTGCCGAAGACCATAAACGTTGGGCTCCTCAGTGTCCGTTC 46996 |||||| ||||| ||| | ||||| | || ||||| || ||||| || ||| Sbjct 5694 CGGGTGACGATCCCGCCAAGGACCACCAGCGCTGGGCGCCCCAGTGCCCCTTC 5642 >seq19342 Length=14378 Score = 100 bits (110), Expect = 2e-16 Identities = 163/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 34472 AATCGTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTAT 34531 ||| || || || | ||| || | ||| | ||| | ||| |||||||||||||| | Sbjct 4032 AATAGTTACCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGT 4091 Query 34532 AATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGT 34591 | || || | ||| || | ||||| ||||||||||| ||||| || ||||| || |||| Sbjct 4092 AGTCAGACAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGT 4151 Query 34592 CCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGC 34651 | || || | || ||||| ||| ||| || ||||| | || || || | Sbjct 4152 CTGGTGGAATACCTTCCTTATCTTGGATTTTAGCTTTTACATTTTCTATAGTATCAGAGG 4211 Query 34652 TCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || | ||| || |||||||| || | || || || ||||| ||||| Sbjct 4212 CCTCCACCTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCAT 4266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314100419138990