Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecale_20felix_20[genbank_20GCA_5F001486065.1_202015- 12-16] 32,723 sequences; 78,530,580 total letters Query= NC_009762.3 Length=47785 Score E Sequences producing significant alignments: (Bits) Value seq18169 551 2e-152 >seq18169 Length=2751 Score = 551 bits (610), Expect = 2e-152 Identities = 1165/1713 (68%), Gaps = 79/1713 (5%) Strand=Plus/Plus Query 38657 GATTTTGTTTTAGATGGTGTGTATGCATATCGAGATATAAATAGAGTGGGAATTGATACA 38716 || || || ||| |||| | |||| ||| | || ||| | ||| || || ||||| Sbjct 18 GACTTCGTATTAAGTGGTATACATGCTTATAGGGACCAAAACAAAGTTGGTATAGATACC 77 Query 38717 AATAGAGGCATTATAACATTAGCGCCAGGTAAAAATGAATTTAAGATTAAAGGAGACGTC 38776 || ||||| |||| ||||||||||| |||||||||||||||||||| || ||||| || Sbjct 78 AACAGAGGTGTTATTACATTAGCGCCTGGTAAAAATGAATTTAAGATAAAGGGAGATGTG 137 Query 38777 AGTGATATTAAAACTACATTT-AAGTTTCCTTTTATTTATAGGTAGG-TGATTTAATGGA 38834 | | | |||| | || ||||| ||||||||||||||||||| |||| ||| | Sbjct 138 ACTTC-ACAAAAAGTGTTGTTCAAGTTCCCTTTTATTTATAGGTAGGGTGATAACATGAA 196 Query 38835 TTATCATGATCATTTATCAGTAATGGATTTTAATGAATTGATTTGTGAAAATTTACTAGA 38894 | | ||||| || ||| | || ||| ||||| | || || || ||||||||| | Sbjct 197 TGAACATGACCACTTAGCCGTGATGAATTTTGAGAAAACAATATGCGAAAATTTAAGTGG 256 Query 38895 TGTAGATTATGGTTCTTTTAAAGAATATTATGAACTGAATGAAGCTAGGTACATCACCTT 38954 ||| |||||||| ||| ||||| | ||| | |||||||| | | || || Sbjct 257 TGTTGATTATGGAGGTTTCAAAGACGACAATGTGTTAAATGAAGCCTCTTCTTTAACATT 316 Query 38955 TACAGTTTATAGAACTACTCATAATAGTTTTGTTTTTGATTTATTGATTTGTGAAAACTT 39014 |||||| | |||| | | ||||| |||||| | ||| | || |||||||| ||||| Sbjct 317 CACAGTTAACCGAACAAGTGATAATCGTTTTGAGTATGACATGTTAATTTGTGAGAACTT 376 Query 39015 CATAATTTATCATGGTGAAAAATATACAATTAAGCAGACAGCGCCAAAGGTTGAAGGTGA 39074 || |||| ||| || |||| ||| ||||| || ||| | || |||| |||||| | Sbjct 377 TATCATTTTTCAAGGAGAAACATACGTGATTAAACAAACAACCCCGAAGGCAGAAGGTAA 436 Query 39075 TAAAGTTTTTATTGAAGTTACGGCATATCACATAATGTATGAATTTCAAAATCACTCAGT 39134 || |||| ||||||||||| ||| |||||| |||||||||||| |||||||| | || Sbjct 437 TATCGTTTCTATTGAAGTTATCGCACATCACACAATGTATGAATTCCAAAATCATTATGT 496 Query 39135 GGAATCAAA---TAAGCTTGATGA-----CGACAGTAGCGAAACTGGTAAAACGCCAGAA 39186 |||||||| ||| |||||| | |||| | ||||| | || || Sbjct 497 TGAATCAAACCGTAAAGATGATGAGGGTGCAACAGAA--GAAACCACTCAATCG------ 548 Query 39187 TACTCTTTAGATGAGTACTTAAGATATGGATTTGCAAATCAAAAAACTTCGGTCAAAATG 39246 ||| | ||||| || || || | ||||| ||||| |||||||| || | | |||| | Sbjct 549 TACACGTTAGAAGAATATTTGAAATATGTGTTTGCTAATCAAAAGACATTGCACAAATTC 608 Query 39247 ACCTATAAAATAATTGGAGATTTTA-AGCGAAAAGTACCGATTGAGGAATTAGGTAACAA 39305 | ||||||||| |||| |||| || | |||||| ||||| ||| | ||| ||| Sbjct 609 AAATATAAAATATATGGATCGTTTACAGAG-AAAGTAGAAATTGATGAACTTGGTGGCAA 667 Query 39306 AAACGGCTTAGAATACTGTAAAGAAGCGGTAGACCTGTTTGGCTGTATAATTTACCCAAA 39365 ||| || | || || || | | || | |||| | ||| |||| ||| || Sbjct 668 AAATGGTATTGAGGCAATCAATGATGGTATCGAATTATTTGATTATATTATTTTCCCTAA 727 Query 39366 TGATACAGAGATTGGTTTTTATTCTCCTGAAACATTTTATCGAAGAAGCGAGAAAGTGAT 39425 |||| || || || ||||| || ||| || | | || ||||| || || Sbjct 728 TGATGATGAAATAGGCTTTTACAAAAGAGATGTATTCTACCAACCAACAGAGAATGTTAT 787 Query 39426 TCGATATCAATATAATACTGATACTGTATCTGCAACTGTCAGTACATTGGAATTAAGAAC 39485 || ||| || ||||||| |||| ||| || |||| ||| || || || ||| ||||||| Sbjct 788 CCGTTATAAACATAATACGGATAATGTTTCAGCAAGTGTTAGCACGTTAGAACTAAGAAC 847 Query 39486 AGCTATAAAAGTTTTTGGAAAAAAGTATACAGCTGAG-GAAAAGAAAAATTATAATCCTA 39544 ||||||||||| | ||| ||||||||| || | ||| |||| |||||| |||| ||||| Sbjct 848 AGCTATAAAAGCATATGGCAAAAAGTATTCATC-GAGTGAAACGAAAAACTATAGTCCTA 906 Query 39545 TTAGAACAACTGACATTAAATATTCAAATGGTTTTATAAAAGAAGGTACTTATCGTACCG 39604 ||| ||| | | | | |||||||| | |||||| ||| ||| ||| ||| || | Sbjct 907 TTAAAACGCCACAACTGACATATTCAAGTAGTTTTAAAAAGGAAAGTAGTTACTATAGTG 966 Query 39605 AAACAATTGGCTCTAAAGCT--ACTATTAACTTTGAT----TGCAAGTATGGTAATGAAA 39658 ||||| | || ||| || || | |||| || || | ||| |||||| Sbjct 967 AAACA------CCAAATGCTAAACAATCGTATGTGATTACGTGTAAATTTGGCGATGAAA 1020 Query 39659 CAGTTAGATTTACAATAAAAAAGGGCTCTCAAGGTGGAATATATAAGTTGATTTTAGACG 39718 || || || ||| || ||||| || | ||||||| | | | || | || | Sbjct 1021 CACTTCGACATACGATTAAAAAAGGTCCATTAGGTGGACTGTTCGAAACATTTGTTGATG 1080 Query 39719 GCAAGCAAATTAAGCA-AATTTCTTGTTTTGCTAAGTCGGTTCAGTC---TCAAACAATA 39774 |||| || ||| | | | ||||||| ||||| || ||| || | ||||||| Sbjct 1081 GCAA-CAGTTTAGGGACTAAATCTTGTTGGGCTAAATC--ATCA-TCAAGTGAAACAATT 1136 Query 39775 GATTTAATAAAAAATATTGATAAAGGCAAGCACGTTTTAGAAATGATATTTTTAGGAGAA 39834 ||||||| ||| | | |||||| ||| | | ||| | ||||| ||| || Sbjct 1137 GATTTAAAGAAAGGTTTGTCTAAAGGACGACACACTGTTGAATTTGTATTTAAAGGTGAT 1196 Query 39835 GACCCCAAAAACAGAATTGATATATCTTCAA---ATAAAAAAGCTAAGCCTTGTATGTAC 39891 || || | ||| | || ||| |||| || ||| | || |||| | Sbjct 1197 GATCC---------AGCGCATAAACCTCCAACAGATAAGAAGTCTAGG--TTTTATGCA- 1244 Query 39892 GTTGGAACTGAAAAATCAACAGTCTTAAATTTAATTGCTGATAATTCAGGTCGCAATCAA 39951 || |||||||||||||| || ||||||||||||||||||| | |||| || | Sbjct 1245 ---GGTACTGAAAAATCAACTGTATTAAATTTAATTGCTGATACTACAGGCGATAAAGCA 1301 Query 39952 TACAAAGCAATTGTCGACTACG--TCGCAGATAGTGCAAAGCAGTTTGGGATTCGATATG 40009 || ||||| || || || | |||| | | || ||| ||| ||| | || |||| Sbjct 1302 TATAAAGCTGTTTATGAATATGTATCGC-CACA-AGCTAAGAAGTATGGTTTACGTTATG 1359 Query 40010 CTAATACGCAAACAAATGAAGATATCGAAACACAGGATAAGCTGTTAGA---ATTTGCAA 40066 | ||||| |||||||| | ||| | | | || | |||| | || || | Sbjct 1360 CAAATACCGTCACAAATGACCAAATC---AGTAATGTAAATCAGTTAAAGAGATGGGCGA 1416 Query 40067 AAAAGCAAATAAATGATACTCCTAAGACTGAATTAGATGTTAATTATATAGGTTATGAAA 40126 | ||| || | || || ||||| || |||||| || |||||||| ||||||| | Sbjct 1417 TGAGTCAATTACAAGACACGCCTAAAACAGAATTAACCGTGAATTATATCAGTTATGACA 1476 Query 40127 AAATAGAGCCAAGAGATAGCGTATTTTTTGTTCATGAATTAATGGGATATAACACTGAAT 40186 || | |||||||||| || ||||||| || ||||||||||| | ||||||||||| Sbjct 1477 GTATCGGACCAAGAGATACTGTTATTTTTGTGCACGAATTAATGGGCTTTAACACTGAAT 1536 Query 40187 TAAAGGTTGTTA----AACTTGATAGGTCACATCCATTTGTAAACGCAATAGATGAAGTG 40242 |||| ||||| | ||| || ||| ||| || || ||| | || | ||||||| Sbjct 1537 TAAAAGTTGTAAGTATAAC--GAAAGG--ACACCCTTTCACAAATACGATTGCTGAAGTG 1592 Query 40243 TCTTTCAGCAATGAAATAAAAGATATGGTACAAATTCAACAAGCACTTAACAGACGAGTT 40302 || ||||| |||||||||||||| ||||| ||||||||||||||| | || | |||| | Sbjct 1593 TCGTTCAGTAATGAAATAAAAGACATGGTTCAAATTCAACAAGCATTGAATAAACGATTA 1652 Query 40303 ATTGCACAAGATAATAGATATAACTATCAAGCA 40335 ||| |||||||| | || ||| ||||||||| Sbjct 1653 CGTGCGCAAGATAACAAATTTAATTATCAAGCA 1685 Score = 286 bits (316), Expect = 1e-72 Identities = 379/520 (73%), Gaps = 6/520 (1%) Strand=Plus/Plus Query 40917 AACAAATCTTTACAAAGTCAAATTAACGCAC-TTGTTGTG-GCACCACGTAATAACAGTG 40974 |||||| |||||||| ||||| | | | ||| ||| || |||||||| || |||| Sbjct 2228 AACAAAGACTTACAAAGCCAAAT--AGGTAGATTGGTGTTAGCGCCACGTAACAATAGTG 2285 Query 40975 CTAATGAGATTGTTCAAGCTCGAGTTAATGTAAACGGCGAAACCTTTGACACATTAAAAG 41034 ||||||||||||| |||||| |||| ||| | |||||| ||||| ||||| |||| Sbjct 2286 CTAATGAGATTGTACAAGCTAGAGTGAATATGTTTGGCGAAGAATTTGAAACATTGAAAG 2345 Query 41035 AACATTTAGACGATTGGGAAACCAAAACTCAAATTAATAAAGAGGAAACTATAAGAGAAT 41094 | || | | ||||| || || || ||| ||||||| ||| | || Sbjct 2346 ATAATATCAATTATTGGCAAGAACGTACGCATATTGATAAAGAAGAAGTTTTATCGTCTG 2405 Query 41095 TA-AATAAGACCAAACAAGAAATTCTTGATATCGAGTATCGTTTTGAACCTGATAAGCAA 41153 || || ||| | | ||||| | | ||| | || ||||| |||||||| ||||| ||| Sbjct 2406 TACAACAAG-CAACTAAAGAAGTATTAGATTTAGAATATCGCTTTGAACCAGATAAACAA 2464 Query 41154 GAATTTTTATTTGTGACAGAACTTGCACCTCTTACAAATGCAGTAATGCAATCCTTCTGG 41213 || || ||||| || |||||| | || ||| | ||||| ||||| ||||| || || ||| Sbjct 2465 GAGTTCTTATTCGTAACAGAATTAGCGCCTTTAACAAACGCAGTTATGCAGTCATTTTGG 2524 Query 41214 TTTGATAATAGAACAGGCATAGTATACATGACACAAGCTAGAAATAATGGCTATATGCTA 41273 ||||||||| ||| ||| || || || ||||||||||||||| ||| || |||||||| Sbjct 2525 TTTGATAATCGAAAAGGTATTGTCTATATGACACAAGCTAGAGGTAACGGATATATGCTC 2584 Query 41274 AGTCGTCTAAGACCTAATGGTCAATTTATAGACAGCTCATTGATTGTAGGTGGGGGTCAT 41333 | | || |||| || || |||| |||||| || ||| | || | ||||| ||||| Sbjct 2585 ACAAGATTACGACCAAACGGGCAATATATAGATAGTTCACTTGTTATTGGTGGTGGTCAC 2644 Query 41334 GGTACACATAACGGTTATAGATATATTGATGATGAGTTATGGATTTATAGTTTTATCTTA 41393 |||||||| || ||||| | ||||| |||||||| | ||||| ||| ||||| | Sbjct 2645 GGTACACACAATGGTTACCGTTATATAGATGATGAACTTTGGATATATTCATTTATTAAA 2704 Query 41394 AATGGTAATAATGAGAATACATTAGTTCGTTTCAAGTATA 41433 ||||| ||||| | || ||||||||||| ||||| |||| Sbjct 2705 AATGGCAATAACCAAAACACATTAGTTCGGTTCAAATATA 2744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152731027846922