Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecale_20felix_20[genbank_20GCA_5F001486065.1_202015- 12-16] 32,723 sequences; 78,530,580 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq10663 223 3e-52 seq18205 215 4e-50 seq25548 93.3 3e-13 >seq10663 Length=11193 Score = 223 bits (246), Expect = 3e-52 Identities = 537/803 (67%), Gaps = 16/803 (2%) Strand=Plus/Minus Query 551789 TGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGTATCATGGTGTGTTGA 551848 ||||||| ||||||| || || ||||| ||||| | | || || | | | ||| Sbjct 2166 TGGAGATACTCATCTCGGCGGAGAAGACTTTGACAGCCGCCTAGTCAACTTCTTAGCTGA 2107 Query 551849 AGATTTTAAACGAAAAAACAAAGTTGATCTATCTAC-ATCTGCCAAAGCTCTTCGTCGTC 551907 || |||||| ||||| | || || || | | | || | ||||| || || || | Sbjct 2106 TGAGTTTAAAAGAAAACATAAGAAAGACCTCCATTCTAACT-CAAAAGCGCTACGCCGCC 2048 Query 551908 TAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTG 551967 | ||||| || || || || || || | ||||| ||| |||| || | | || | Sbjct 2047 TCAGAACAGCAGCAGAGAGGGCTAAGCGCACACTTTCTTCTAGTACGGAAGCTAACATCG 1988 Query 551968 AAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTG 552027 || | || | |||| || || || |||| || | |||| || || | ||||| Sbjct 1987 AAATTGACGCTTTATACGAAGGCATAGATTTCTATTCAAGAGTTTCTAGAGCAAGATTTG 1928 Query 552028 AAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAG 552087 | || | | ||||| | ||| ||| ||| | || ||||||||| | | | | | || Sbjct 1927 AGGAGCTGAATGCTGATTTATTTCGAACAACTTTAGATCCAGTAGAAAAGGCTCTTAAAG 1868 Query 552088 ATTCAAAGATTGATAA--ATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAG 552145 | | || | ||||| || ||| || |||| || ||| | ||||| || || ||| | Sbjct 1867 ACGCTAAATTAGATAAGAATTCAAT-TA-ATGACATCGTGTTAGTTGGGGGCTCGACACG 1810 Query 552146 AATTCCTAAAATTCG---CGAAATGTTAAGTTCTTATTTCAATGGTAAAAAATTAAATGA 552202 ||||| ||||| | | || || ||| |||||||| ||||| | ||| Sbjct 1809 GATTCCAAAAATCCAGTCCCTTCTGCAAA---CTTTCTTCAATGGAAAAAAGCTCAATTT 1753 Query 552203 AAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTC 552262 | | | |||||||| || || ||||| || || || ||| |||| |||||||| || Sbjct 1752 ATCTATAAATCCAGACGAAGCCGTTGCATACGGAGCTGCAGTTCAGGCAGCTATACTAAG 1693 Query 552263 TGG--ACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCT 552320 ||| |||||| || || | ||| | || | || || ||||| |||||| | || Sbjct 1692 TGGCGACAAAC--ATTCTAAGATCCAAGACGTTTTGCTGGTGGATGTGACTCCTTTGTCA 1635 Query 552321 CTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATT 552380 || ||| |||| || | |||||| ||||||| ||| | | ||| ||||| ||| || Sbjct 1634 CTAGGTATAGAGACGGCTGGAGGAGTTATGACAAATATAGTAGATCGAAATGCTAAAATA 1575 Query 552381 CCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATT 552440 || || ||| | || | ||| | ||||| | || ||||| |||| || || || Sbjct 1574 CCCTGCAAACATTCCCAAACATTCACAACGTACGCTGACAATCAGCCTGCAGTCACTATA 1515 Query 552441 CAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAAT 552500 ||| | | ||||||||||||| | | |||||||| || ||| | | || || || || Sbjct 1514 CAAGTGTATGAAGGAGAAAGAGCAATGACTAAAGACAACAATTTATTGGGGACATTCGAT 1455 Query 552501 TTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATC 552560 || ||||| || || ||||| ||||| || || ||||| || ||||| || ||| | Sbjct 1454 TTGACGGGTATACCGCCAGCTCCACGTGGTGTTCCTCAAATAGACGTTACCTTTGATTTA 1395 Query 552561 GATGCCAATGGAATTTTGAATGT 552583 ||||| |||||||| || ||||| Sbjct 1394 GATGCGAATGGAATATTAAATGT 1372 Score = 223 bits (246), Expect = 3e-52 Identities = 383/551 (70%), Gaps = 4/551 (1%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || |||||||| || |||||| |||||| ||||| ||||| | ||||| Sbjct 2822 GCAATCGGCATTGATTTAGGTACAACATATTCTTGTGTCGGTGTGTGGCAGCACGGTAAT 2763 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || || || ||||||||||| || ||||| || || || || ||| | ||||| Sbjct 2762 GTGGACATCATAGCGAATGATCAAGGGAATAGAACCACACCGTCATACGTTGCCTTCACC 2703 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || ||||||| || |||| || || || ||| | || | | || || | || Sbjct 2702 GATACTGAACGCCTAATTGGAGACGCGGCGAAAAACCAGGTTGCCTTAAACCCAATTAAC 2643 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || | ||||| || || || |||| || || | | ||||| | | | ||| | Sbjct 2642 ACAGTATTTGACGCAAAGCGGCTAATAGGTAGGAAATACGATGATCCTAAAATACAGCAA 2583 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291 || | || ||||||||||| || | || |||| ||| ||||| | || ||| | Sbjct 2582 GACCTAAAACATTGGCCTTTTAAAGTAGTAAATGAAAGTGGGAAACCAAAAATACAAGTT 2523 Query 550292 ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAAT-TTCATCTATGGTTTTAAT 550350 |||||| ||||| ||||| ||| |||| ||| |||| || | |||||| |||| Sbjct 2522 ACTCATAAAGGAAAGACTAAACGTTTTGCACCTGAAGAAATAAGCAGC-ATGGTTCTAAT 2464 Query 550351 GAAAATGAAACAAACAGC-CAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAA 550409 ||||||||| | || || | | | || |||| | || | | || || || | Sbjct 2463 AAAAATGAAAGAGACGGCAGAATCGTATTTGGGGTC-ATCCGTAAGTAAGGCGGTTATCA 2405 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 | || || || || ||||| ||||| ||||| ||||| || ||||||||||| ||||| Sbjct 2404 CAGTTCCTGCCTACTTTAACGACTCTCAACGACAAGCAACAAAAGATGCTGGGACTATTG 2345 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 | ||||| ||||||||||| || || || ||||||||||| || ||| | || || || Sbjct 2344 CCGGACTAAATGTTCTTCGAATCATAAACGAACCTACTGCAGCAGCATTGGCTTACGGCT 2285 Query 550530 TTGATAAACAT 550540 | |||||| || Sbjct 2284 TAGATAAAAAT 2274 >seq18205 Length=6455 Score = 215 bits (238), Expect = 4e-50 Identities = 380/549 (69%), Gaps = 6/549 (1%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || ||||| || |||||||| |||||||| || |||||| |||| || Sbjct 5450 GCGATTGGAATTGATTTGGGCACCACATACTCGTGTGTTGGGGTATGGCAACATGGAAAC 5391 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || ||||| || || || || || | ||||| || || ||||| | |||||| Sbjct 5390 GTGGAGATCATTGCTAACGACCAGGGCAATCGCACTACCCCTTCATATGTCGCGTTCACG 5331 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || || | | | || |||||||| || | || | || ||||||||||| Sbjct 5330 GACACAGAGCGGCTTATCGGCGATGCAGCCAAGAACCAGGTTGCTCTCAATCCTACCAAC 5271 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || | |||||||| || || || || || | | ||| | || || | |||| Sbjct 5270 ACGGTGTTTGATGCAAAGCGATTGATCGGCCGCAAGTTTGACGACTCCAAGATTCAACAG 5211 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291 || ||| | || ||||| ||| || || | |||| | ||||||||| | || ||| | Sbjct 5210 GACATGCAACACTGGCCCTTCAAAGTTATCAATGAATACGGAAAACCTAAGATCCAAGTT 5151 Query 550292 ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATC--TATGGTTTTAA 550349 | | ||||| | ||| |||| | || ||| |||| || | ||||||| | | Sbjct 5150 GATTTTAAAGGAGAGGCGAAAAAATTCGCCCCCGAAGAAAT--CAGCAGTATGGTTCTTA 5093 Query 550350 TGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACG-GATGCAGTAATA 550408 || ||||| ||| ||| |||| | | || | | || | || |||||||| || Sbjct 5092 CAAAGATGAAGGAAATAGCGGAGGCTTATCTGGGA-ACGCAGGTGCGTGATGCAGTCATC 5034 Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 |||||||| || || || || ||||| ||||| || |||||||||||||| ||| ||| Sbjct 5033 ACTGTACCCGCTTACTTCAACGACTCTCAACGCCAGGCTACTAAAGATGCGGGAGCTATC 4974 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 || || || || || | || |||||||| ||||| || ||||| ||||| || || || Sbjct 4973 GCAGGCCTCAACGTCTTGCGAATTATCAACGAACCCACAGCTGCCGCACTGGCCTACGGT 4914 Query 550529 CTTGATAAA 550537 ||||||||| Sbjct 4913 CTTGATAAA 4905 >seq25548 Length=6481 Score = 93.3 bits (102), Expect = 3e-13 Identities = 202/297 (68%), Gaps = 4/297 (1%) Strand=Plus/Minus Query 430229 AATTCAGTTGAATATATATTCGCTAATTTTGCTCCGAATCCATTTTTACCACCAACAAtt 430288 |||| ||||||| ||||||| | || |||||| | |||||| | || || | | Sbjct 4699 AATTTAGTTGAAAATATATTACAGAGCTTAGCTCCGTAACCATTTCTTCCTCCTGTCACT 4640 Query 430289 tttttttCACCTTTATCATAATTAGTGGATGTTAATAGTTCTCCAAAAATCATCGATGGT 430348 |||| ||| | | || |||||| | ||||| |||| | |||||| ||||| | ||| Sbjct 4639 TTTTCTTCTTCATCATTATAATTTGATGATGTCAATAAGTGTCCAAATATCATGGTTGGA 4580 Query 430349 ACCATGATTTTATGTTCTTTATGCTCGACGACATCAATACCATCACCATTATTCCAAACA 430408 || ||||| | |||||||||| || || || ||| ||||| || | ||| Sbjct 4579 ACATACATTTTTTCTTCTTTATGCATCACCACTGGGATCCCACATCCATTGTTGTATACA 4520 Query 430409 CTAATTTCTCCAGATTCTTCATTGATGTCGACTTTTATCATATTACATGATTTGCATCT- 430467 ||| ||||||| ||| ||||| | ||| || || | ||| || |||||| Sbjct 4519 GATATTGTATTTGATTCTTGATTTATGTCAATTTTGATTATGTC-CATT-TTAGCATCTC 4462 Query 430468 TTTACTA-TGATCCGCTGAATTTACAAGAACTTCATCATATATTTTATAAAGTCCTG 430523 ||| || | ||| |||| |||||| | | ||| ||||||||||| || | |||| Sbjct 4461 TTTGCTTGTTATCAGCTGCATTTACTAATATTTCGTCATATATTTTGTATAAACCTG 4405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027565460179270