Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecale_20felix_20[genbank_20GCA_5F001486065.1_202015- 12-16] 32,723 sequences; 78,530,580 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq16775 95.1 2e-14 seq2102 82.4 1e-10 >seq16775 Length=16834 Score = 95.1 bits (104), Expect = 2e-14 Identities = 142/195 (73%), Gaps = 10/195 (5%) Strand=Plus/Plus Query 192926 AACGGAAACAGTATCTCATACATTAAATTATCCACAAAAACCCCTTGTTACCACA-GATA 192984 || ||| ||| || | ||| | | |||||||||| || ||||| || || ||| ||| Sbjct 10759 AATGGATACATTAGCCCATGTACTCTATTATCCACATAAGCCCCTGGTCACAACACGATC 10818 Query 192985 T-TGCAAAATTTAATAAATTAGACGATTATCCAAATGGTATTAATGCTATTGTTGCTATA 193043 | || || ||||| | ||||| || | || |||||| ||| |||||||||| || Sbjct 10819 TATGGAATATTTACGAT-TTAGA-GAGTTGCCTGCTGGTATCAATTCTATTGTTGCAATT 10876 Query 193044 GCTTGCTATACTGGTTATAATCAAGAAGACAGTATTATTTTAAATAAAGCTT---CTATT 193100 || || ||||| || ||||||||||| ||| | ||||||||| |||| || || Sbjct 10877 TTATGTTACACTGGATACAATCAAGAAGATAGTGTCATTTTAAAT---GCTTCAGCTGTT 10933 Query 193101 GAAAGAGGATTATTT 193115 ||||||||||| ||| Sbjct 10934 GAAAGAGGATTCTTT 10948 >seq2102 Length=18217 Score = 82.4 bits (90), Expect = 1e-10 Identities = 85/109 (78%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 51957 ACATTTAAAATGAATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAA 52016 |||||| ||||||||| | ||| |||| |||||||||||||| || || ||| Sbjct 16502 ACATTTCGTATGAATTTGAGTTGCACTTCGCCATACAATGCTGATTTTGACGGCGACGAA 16443 Query 52017 ATGAATTTACATGTTCCTCAATCATATGG-AGCTACTGCTGAATTACAA 52064 |||||||||||||| |||||||| ||||| | || ||||||| || || Sbjct 16442 ATGAATTTACATGTACCTCAATC-TATGGAAACTCGTGCTGAAGTAGAA 16395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634917788542440