Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq48588 508 7e-139 seq111536 100 3e-16 seq289356 91.5 2e-13 seq94045 82.4 9e-11 >seq48588 Length=2845 Score = 508 bits (562), Expect = 7e-139 Identities = 1099/1624 (68%), Gaps = 49/1624 (3%) Strand=Plus/Plus Query 52790 ATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAG 52849 |||||| | ||||| | || || ||||| | | | ||| ||||| || |||| ||| Sbjct 255 ATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGTAG 314 Query 52850 TACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAA 52909 |||||||| ||||||| ||| | |||| ||| ||||| || |||||||| | Sbjct 315 TACATTCCTGTTTTTAAACCCATTTTCCAAGCGTGGAAATGAATCGACGTTAGTTTCCCA 374 Query 52910 TAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTG 52969 || | || | || | ||| || || | |||||||||||| || || || ||||| || Sbjct 375 TAGTTAGGTTTAGCAACATGTATGTTGAAAGATTGACTTTGGTCTATAAACGCTCCTCTA 434 Query 52970 TCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCG 53028 || || ||||| | |||| ||| || ||| ||| ||||| | ||||| || || || Sbjct 435 TCAGCGGCCATCTGTATGGACGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAATCT 494 Query 53029 CTTAATATCTTCTGGAAGGTTTGTA--TTC-TGAATAGATCCACCATCTACCATAATCCT 53085 ||| || |||| || | ||| | ||| || ||||||||| | ||||| Sbjct 495 CTT-ATTTCTTTAGGGATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATAAG 553 Query 53086 ATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATT 53145 ||| || || || |||| |||||| | | || ||| | | || ||||| | || Sbjct 554 ATTTTTCATATCTTCATCCCATAAATCAGCCCGAGTCAAATCAGTCAGAAGATGATGGTT 613 Query 53146 AACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTC 53205 ||||| ||||||||||||| || ||||| | ||||||||| ||| | ||||| Sbjct 614 CACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAATGGTTC 673 Query 53206 CACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAA 53265 | ||| ||| | || || | |||||| ||||| || ||||| ||||||||||| | ||| Sbjct 674 AAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTTGGCATAGGTGCTATCAA 733 Query 53266 TAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAA 53323 || | ||| | | ||| ||||| || || || ||||| || |||| |||||| Sbjct 734 TAGAGAATTGCGCAAACC--ATGTTTTGCTATCTTTTCTTTGAGGACAGCCCAGTTCCAA 791 Query 53324 AGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGA 53382 || || | || || || ||||| | || || | || Sbjct 792 AGGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCTTGGCTAGCTGGAC-T 850 Query 53383 TCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGC 53442 |||| |||||| ||||| ||||| || || |||| ||||||||| || |||||||| Sbjct 851 TCCTTGATATGTGCTGTATGCGCCTTCTTTTTCTGCTAATTCACAACTAGCTTCTAATGC 910 Query 53443 ACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAA 53502 ||| |||||||| ||||| || || | | ||| || | ||||| | || || | Sbjct 911 ACCATAATAAATTGTTTCAAATATTTGTTGATTAAGGAGTATTGCTTTCTCACTTTCGTA 970 Query 53503 TGGATAAT-TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTC 53561 || || | | | | | ||| | ||||| | || |||||||||||||||||||||| Sbjct 971 AGG-TATTCTCATCAACACAAATGTATCTGCCATACCCTGAACACCAATACCGATAGGTC 1029 Query 53562 TATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTT 53621 || ||| |||| || ||| ||||| || | ||||||| | |||| ||| || | || Sbjct 1030 GGTGCCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAGTTAACATCAATGACTT 1089 Query 53622 TATTGAGGTTT---CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATT 53678 | || | ||| | ||||| ||||| | || || | ||| ||||| ||| Sbjct 1090 TGTTTAAATTTTGAGTCACAAT--CTTTG-TGATTTCTTTTAATTTTTTAAAATTAAA-- 1144 Query 53679 GTCCATCTATT----ACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACC 53734 || || |||| |||||| |||| | ||| || || || || || || || || || Sbjct 1145 -TCTAT-TATTTTCAACAAACTTGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACT 1202 Query 53735 TCATTAGCATCCGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTT 53791 |||| | || | | ||||| | | ||||||||||||||| ||||| || || || Sbjct 1203 TCAT---CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTG 1259 Query 53792 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTA 53851 || | ||||| |||||||||||| |||| || ||||||||||| | || |||| ||| Sbjct 1260 CCAAGATTTTTTTGATTACTCTTCCTGTTGCAAGCATCCTTATATAACATATATGGTGTA 1319 Query 53852 CCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGAT 53911 ||||| || | || | ||||||||| | ||||| | | |||| | | | | | Sbjct 1320 CCAGTCTCCACTTGAGCTTCTATAATTGACTTCCATAACTCTTGAGCTCTGA--CTTGTT 1377 Query 53912 TTGT--ATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAA 53969 || | | | |||||| ||| ||| | ||| | | |||||| || ||||| || Sbjct 1378 TTATAAACCGTTTTTCTTCTTCATATTTGGCATATAGTTCTTCAAATTCCTCTCCATAAC 1437 Query 53970 CATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT-- 54027 | | | |||||||| |||| |||||||| | ||| ||| |||||||| Sbjct 1438 AGTCAGCGAGGCCAGGACAATCATGAGGACACATGAGACTCCAATCT---TCATCCTTTT 1494 Query 54028 -CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTAT 54086 |||| ||||||||| ||||| || ||||| | || ||| || ||||| | ||| Sbjct 1495 CTACTCTTTTCATAAACAGATCTGGTATCCATAAGGCATAAAACAGTTCTCTTGCTCTCA 1554 Query 54087 GTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 54146 ||| || || ||||| ||||| || | ||| |||||| | | || || | |||||| | Sbjct 1555 TTTCTTCCTTACCTGTGTTCTTCTTTAAATCTAGGAACTCAAATATGTCCGCATGCCAAG 1614 Query 54147 GTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAG 54206 | || ||||| || | | | || || ||||||||||| || ||||||| ||||| | Sbjct 1615 GCTCTAAGTAAATTGCAAATGCACCGGGACGTTTGTTTCCACCTTGATCTACATATCTGG 1674 Query 54207 CGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGG 54266 | || || || || |||||||||||||| | | |||||| || | ||||| || || | Sbjct 1675 CAGTATTGTTGTACACTCTCAACATTGGCACTAGACCATTTGAAACCCCATTAGTACCAG 1734 Query 54267 AGATATAGCTTCCACTGGCACGAAT---ATTACTAATTGATAGACCTATCCCCCCTGCCA 54323 ||||| || ||| | || || || || || |||||| || || || Sbjct 1735 CTATATAAGACCCCTGGGCTCTGATGCAATGTGTA--TG-TAAACCTATGCCACCGGCAG 1791 Query 54324 TTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCA 54383 |||||| |||||||| ||| ||||||| |||||| | || || || |||||||| || Sbjct 1792 ATTTAGAAATTAATGCACATTGTTTTAAAGTATCAAAAATACCTTCAATACTATCGTCTT 1851 Query 54384 TCAT 54387 |||| Sbjct 1852 TCAT 1855 Score = 96.9 bits (106), Expect = 4e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 54568 CTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 54627 ||| |||||||| || | ||| || ||| ||||||||||||||||||||||||||||||| Sbjct 2253 CTTATTGTTTATCTTTAACAAATATGATCTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 2312 Query 54628 TGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTT 54678 | ||| |||| || |||| ||| | |||| | ||| ||||| | ||| Sbjct 2313 TTTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTGTTTTT 2363 >seq111536 Length=3730 Score = 100 bits (110), Expect = 3e-16 Identities = 245/369 (66%), Gaps = 7/369 (2%) Strand=Plus/Plus Query 147329 TTATGACTCCA--ATTAATCCCATGTTAGCGGAATCGTGTGATTCTGTCAATAAGGCATT 147386 ||||||||||| |||| || |||||||| ||| | || | || || | | ||| | Sbjct 2907 TTATGACTCCAGTATTA--CCGATGTTAGCTGAAGCTTGCAAGTCGGTTGAAATGGCTAT 2964 Query 147387 TAAAAAATTTCCATCAGGAATGTTTGCTGAAGTCAAATACGATGGCGAGAGAGTACAAGT 147446 ||||||| |||| || |||||| |||| | ||||| ||||| || | || ||||| Sbjct 2965 GAAAAAATGTCCAAATGGCATGTTTTCTGAGATAAAATATGATGGAGAACGGGTTCAAGT 3024 Query 147447 TCATAAAAATAATAACGAGTTTGCCTTTTTTAGTAGAAACATGAAACCAGTACTCTCTTA 147506 ||||||||| || ||||| | |||| | | | ||||||||| | || | Sbjct 3025 TCATAAAAAGGGAAATGAGTTCAAATATTTTTCCCGTGCCTTAAAACCAGTAATGGCTCA 3084 Query 147507 TAAAGTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCGT 147566 ||||| | || | ||||| || |||| ||||||||| |||| | | | | Sbjct 3085 CAAAGTTAGTCATTTTAAAGATTATTTACCTAAAGCATTTCCTAAAGGAGCTGATTTGAT 3144 Query 147567 ATTGGATTCTGAAATTGTTCTTGTAGACGAACATAATGTACAGC---TCCCGTTTGGAAG 147623 |||||| ||||| | || | || || | ||| || | | | | || ||||| | Sbjct 3145 TTTGGATGCTGAAGTACTTATGGTTGATGTCAATACTGGAAAACCATTGCCTTTTGGTAC 3204 Query 147624 TTTAGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTTGTGTTTGA 147683 |||||||| |||||| | ||||| |||| | || | | ||||| | | | ||||| Sbjct 3205 ATTAGGTATTCACAAACAATCAGAATTTAAAGATGCTCAAGTTTGTTTATATATATTTGA 3264 Query 147684 CTGTTTGTA 147692 || || || Sbjct 3265 TTGCTTATA 3273 >seq289356 Length=614 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 54779 TTTTTTGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCC 54838 || || || ||||| |||| ||| |||| |||||||| || || | |||||||||||| Sbjct 511 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCA 452 Query 54839 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTT 54898 ||||| | |||||| ||| ||||| ||||| || | ||| | || | || | ||| Sbjct 451 GGATGATCTGTAGTCTTAGTAGCTGCAATTTCAGCAGCTAGATTATCAAGCTCAGCAGTT 392 Query 54899 GTTACTCCATTATATATTCC 54918 ||||| ||| |||||| || Sbjct 391 GTTACACCAGAATATATGCC 372 >seq94045 Length=338 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 24621 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 24680 || |||| || |||||||| | |||||||| ||||| || || ||||||||||| | | Sbjct 307 TTGGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGC 248 Query 24681 CAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 || ||||| ||||||| ||||| || ||||| || Sbjct 247 CATATGTCCGGATATTGGATTGGGAATATAACGAA 213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591402204305040