Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq6932 223 3e-53 seq4418 104 2e-17 seq6747 89.7 4e-13 >seq6932 Length=2340 Score = 223 bits (246), Expect = 3e-53 Identities = 443/648 (68%), Gaps = 31/648 (5%) Strand=Plus/Plus Query 105997 GGGTTAGCCCCTTTGCCGCCCGGAAACTCCCAATCGATGTCTACACCGTCAAAGAATTTC 106056 |||||||| ||||| || || || |||||||||||||| || ||||| |||||||||||| Sbjct 947 GGGTTAGCACCTTTACCACCAGGGAACTCCCAATCGATATCAACACCATCAAAGAATTTC 1006 Query 106057 CACACTTGCAGAAATTCCTTAACCGAATCTACAAAAACGT-TTCT------TTTTTCAAC 106109 || | | ||||| |||||||| || | ||||| ||| |||| ||| ||||| Sbjct 1007 CATGTTAGAAGAAACTCCTTAACTGACTGCACAAAT-CGTGTTCTCTTAGATTTGTCAAC 1065 Query 106110 ATCGTGCATAAAATAAAATGGGTCTGATAGAGTCCAGCCTCCTATTGAAGGAAGAATTTT 106169 | ||| | || || || | || ||||| || || || || |||||||| || Sbjct 1066 T------AAAAAGAAGAAAGGATCGGCGAGCGTCCACCCACCAATAGAGGGAAGAATCTT 1119 Query 106170 TAAATGGGGGTTTGCTAATTTTGCCGCCATCAACTGTCCAAAATTGCCTTTATACGGCTC 106229 || | ||| ||| |||| | ||| || || ||||| |||||||| || ||||| Sbjct 1120 CAATTCAGGGCGGGCTTGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTC 1179 Query 106230 GTTCCAAGCGGACACACCTTTTTGGGGTTTTTGTACGGCGGCCCACGGATCGTGAATGGC 106289 |||||| | |||| |||||||| |||||||||| || ||||| |||||||| || | Sbjct 1180 GTTCCACGAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGA 1239 Query 106290 AACTTTGAAATCTTCGCGTCCCTTGCACGATCTTTGCAAAGATTCAAAGCTTCCGGGTAT 106349 |||||||| || || || || | || || | |||| | || || || || || Sbjct 1240 GACTTTGAAGTCCTCACGGCCGCTACAGGACCGCTGCAGTGCTTGGAAACTGCCTTCGAT 1299 Query 106350 CGTTTTGAGGGCGTCGTTTATTCCATCGCCGCCGCAGATGGGTATGAAACCATACAACAA 106409 | ||| | | ||| ||||| ||||| |||||||| || || || || ||||| | ||| Sbjct 1300 CTCTTTTAAGCTGTCATTTATGCCATCACCGCCGCAAATTGGAATAAAGCCATAGAGCAA 1359 Query 106410 GTGTGATAAATTTGGCAAGGGAACTTTGTCTACGGGAAAGTTGCGCCCGTACACACCCCA 106469 || | | ||| || | || | || ||||| || || | || |||||||| Sbjct 1360 ATGAGTAAGATTAGGTATAGGTATACGATCCACGGGGAATTTTCTAGGATAGACACCCCA 1419 Query 106470 CTCAACAAAGTACGCAGCGACAATTTTATCC---TCTCTCCTGCCA-GGTTTGTTGTTTT 106525 || || ||||| || | |||| ||| ||| | | | || | || || || |||| Sbjct 1420 TTCTACGAAGTAGGCGCCTACAACTTT-TCCAGATGTTTGCTTAAATGGCTTATTTTTTT 1478 Query 106526 CCAGCCATGTGTATTCGAGCGGTGCCAGATGGCCGCCGTCGGTGTCTGCGACTTTGACCA 106585 | | |||| ||||| || || | | ||| | || || || || || || ||| | Sbjct 1479 CTCCCAATGTATATTCCAGAGGCGGTAAATGACTTCCATCAGTATCAGCCAC---GACAA 1535 Query 106586 ACAC---GGGATCGCTCACGGAA---CAGCCGTCCTCATTGCAAAGTT 106627 | ||||||||| |||| |||||||| ||||||||||||| Sbjct 1536 TTTCGGTGGGATCGCT---GGAACTGCAGCCGTCTTCATTGCAAAGTT 1580 >seq4418 Length=3433 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| ||| | ||||| |||| |||||||| || || ||| ||| | | Sbjct 861 AATGCAAATTTTCGTGAAAACGCTGACTGGCAAAACTATCACATTGGAAGTAGAAGCTTC 920 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || | ||| ||||||| || |||||||| | ||| ||| || Sbjct 921 TGATACAATAGAAAATGTCAAGGCAAAAATTCAGGACAAAGAAGGCATTCCCCCAGACCA 980 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| ||| | || ||||| || || ||||| |||||| | ||| | | |||||||| Sbjct 981 ACAGAGATTGATTTTTGCCGGTAAGCAACTTGAAGATGGAAGAACATTATCTGATTACAA 1040 Query 29141 TATTCAGAAGGAATCTACTCTTCAC 29165 ||||||||| |||||||| |||||| Sbjct 1041 TATTCAGAAAGAATCTACCCTTCAC 1065 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | |||||| | || ||||| || ||||| ||| || || | Sbjct 633 AATGCAAATTTTTGTAAAAACACTTACAGGCAAGACTATTACTCTTGAAGTTGAGCCTTC 692 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || ||||| ||||||| ||||| || || | ||| ||| || Sbjct 693 TGATACAATTGAAAATGTTAAGGCAAAAATTCAAGATAAGGAGGGGATTCCCCCAGACCA 752 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| || ||||| ||||| || |||||||| |||||| || || | || ||||| Sbjct 753 ACAGAGGCTTATTTTTGCAGGAAAACAACTTGAAGATGGACGCACACTGTCAGACTACAA 812 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||| ||||||||||| | ||| | || ||||| | |||| || Sbjct 813 TATTCAAAAGGAATCTACCTTGCACTTAGTACTACGACTGAGAGGTGG 860 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | |||||| |||| |||||||| ||||| ||| |||| | | Sbjct 178 ATGCAAATTTTTGTTAAAACACTGACTGGCAAAACTATTACTTTAGAAGTGGAAGCATCT 237 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || ||||| ||| ||| || || ||||| | || ||| ||| Sbjct 238 GACACAATCGAAAATGTTAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGACCAA 297 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | || || || || || |||||||||||| || || | || || ||| Sbjct 298 CAAAGATTGATTTTCGCCGGAAAGCAACTGGAAGATGGACGCACACTGTCAGACTATAAT 357 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTG 29171 |||||||||||||| ||| | ||| ||||| Sbjct 358 ATTCAGAAGGAATCGACTTTGCACTTGGTG 387 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/138 (74%), Gaps = 4/138 (3%) Strand=Plus/Plus Query 29035 ATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCT 29094 || ||||| |||||| |||||||| || | ||| |||||| ||||| || || | Sbjct 23 ATGTTAAGGCGAAAATTCAGGATAAAGAGGGCATTCCCCCAGATCAGCAAAGGCTAATTT 82 Query 29095 TTGCGGGCAAACAACTGGAAGATT--CCAAAACTATGGCCGATTACAATATTCAGAAGGA 29152 |||| || || || || |||||| | | ||||| | || ||||||||||||||||| Sbjct 83 TTGCTGGAAAGCAGCTTGAAGATGGACGCACACTAT--CTGACTACAATATTCAGAAGGA 140 Query 29153 ATCTACTCTTCACATGGT 29170 ||| ||| | ||| |||| Sbjct 141 ATCGACTTTGCACTTGGT 158 >seq6747 Length=1699 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/112 (79%), Gaps = 4/112 (4%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || ||||||||| | ||| ||| |||||||| || || ||||| || |||||||||||| Sbjct 1228 GACAAAGAAGGTATTCCCCCAGACCAACAAAGGCTCATTTTTGCTGGAAAACAACTGGAA 1169 Query 29115 GATTCCA--AAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 ||| | | ||||| | ||||| || ||||| |||||||||||||| || Sbjct 1168 GATGGCCGTACACTAT--CTGATTATAACATTCAAAAGGAATCTACTCTACA 1119 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | |||||| | || || ||||| ||||| ||| ||| || | Sbjct 1093 ATGCAAATTTTTGTTAAAACACTTACTGGAAAAACAATTACGTTAGAAGTTGAAGCCTCT 1034 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| ||||| || ||||| || | || ||||| Sbjct 1033 GACACAATTGAAAATGTAAAGGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGATCAG 974 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | ||||||||||| || || ||| |||||||| ||| || | ||||||||| Sbjct 973 CAGCGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACTTTGTCAGATTACAAT 914 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||| || || || |||||| |||| | || | |||||||| Sbjct 913 ATTCAGAAAGAGTCCACCCTTCACTTGGTACTCCGTCTGCGAGGAGG 867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426704522119565